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Search of human proteins with 157384994
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157384994 hypothetical protein LOC136157 [Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157384994 hypothetical protein LOC136157 [Homo sapiens] 400 e-112
gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo... 289 1e-78
gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... 268 2e-72
gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 268 2e-72
gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 268 2e-72
gi|54859722 nucleoporin 160kDa [Homo sapiens] 29 2.9
gi|7657265 fem-1 homolog b [Homo sapiens] 28 4.9
gi|24234683 ubiquitin specific peptidase 11 [Homo sapiens] 28 6.4
gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens] 28 6.4
gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens] 27 8.4
gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens] 27 8.4
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho... 27 8.4
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 27 8.4
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho... 27 8.4
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho... 27 8.4
>gi|157384994 hypothetical protein LOC136157 [Homo sapiens]
Length = 194
Score = 400 bits (1027), Expect = e-112
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT
Sbjct: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
Query: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV
Sbjct: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Query: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME
Sbjct: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
Query: 181 EKAGKSFLHTVCFY 194
EKAGKSFLHTVCFY
Sbjct: 181 EKAGKSFLHTVCFY 194
>gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo
sapiens]
Length = 194
Score = 289 bits (739), Expect = 1e-78
Identities = 136/194 (70%), Positives = 163/194 (84%)
Query: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
M SSPLRVAVVC SN NRSMEAH+IL ++G SVRSFGT +HV+LPG P+ P VYDF TT
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
Query: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Y +MYNDLLRKD+E YT NGILH+L RN+RIKP PERFQ C + FD+I TCEERVYD VV
Sbjct: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
Query: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
EDL SREQ+T QPVHV+N+DI+D E A LGAFLICE+CQC+Q ++DME+ ++ELL + E
Sbjct: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
Query: 181 EKAGKSFLHTVCFY 194
EK+G++FLHTVCFY
Sbjct: 181 EKSGRTFLHTVCFY 194
>gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 268 bits (686), Expect = 2e-72
Identities = 123/194 (63%), Positives = 158/194 (81%)
Query: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
M SPLRVAVVC +N N+SMEAH +L ++G SV+SFG HV+LPG PN P +YDF TT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Y EMYNDL+ KD E YT NG+L++L RN+RIK PERFQ+C + FD+I TCEE +YD VV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
EDL SREQ+T +PVHV+NMDI+D E AI+GAFLICE+CQC+Q+S+DME+ +++LL ++E
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 EKAGKSFLHTVCFY 194
+K G++FLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 268 bits (686), Expect = 2e-72
Identities = 123/194 (63%), Positives = 158/194 (81%)
Query: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
M SPLRVAVVC +N N+SMEAH +L ++G SV+SFG HV+LPG PN P +YDF TT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Y EMYNDL+ KD E YT NG+L++L RN+RIK PERFQ+C + FD+I TCEE +YD VV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
EDL SREQ+T +PVHV+NMDI+D E AI+GAFLICE+CQC+Q+S+DME+ +++LL ++E
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 EKAGKSFLHTVCFY 194
+K G++FLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 268 bits (686), Expect = 2e-72
Identities = 123/194 (63%), Positives = 158/194 (81%)
Query: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
M SPLRVAVVC +N N+SMEAH +L ++G SV+SFG HV+LPG PN P +YDF TT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Y EMYNDL+ KD E YT NG+L++L RN+RIK PERFQ+C + FD+I TCEE +YD VV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
EDL SREQ+T +PVHV+NMDI+D E AI+GAFLICE+CQC+Q+S+DME+ +++LL ++E
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 EKAGKSFLHTVCFY 194
+K G++FLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|54859722 nucleoporin 160kDa [Homo sapiens]
Length = 1436
Score = 28.9 bits (63), Expect = 2.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 117 DTVVEDLCSREQQTFQPVHVINMDIKD 143
+ V+ED+CS+ Q+ P+H I + I++
Sbjct: 652 ENVMEDICSKLQEIRNPIHAIGLLIRE 678
>gi|7657265 fem-1 homolog b [Homo sapiens]
Length = 627
Score = 28.1 bits (61), Expect = 4.9
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 41 HVRLPGRRPNHPVVYDFATTYKEM--YNDLLR-KDRECYTHNGILHILGRNERIKPGPER 97
H+R G R H + FA + +M N+ ++ D EC +L I R+K +
Sbjct: 372 HLRQKGNRNTHKDLLRFAQVFSQMIHLNETVKAPDIECVLRCSVLEIEQSMNRVKNISDA 431
Query: 98 -------FQECTEFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHV 136
EC + + C ED C +Q + +H+
Sbjct: 432 DVHNAMDNYECNLYTFLYLVCISTKTQCSEEDQCKINKQIYNLIHL 477
>gi|24234683 ubiquitin specific peptidase 11 [Homo sapiens]
Length = 963
Score = 27.7 bits (60), Expect = 6.4
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 27 RRKGL----SVRSFGTESHVRLPGRRPNHP-VVYDFATTYKEMYNDLLRKDRECYT-HNG 80
RRK L +V S GT P P + D+ K+ Y D + + E Y H+
Sbjct: 712 RRKQLFTLQTVNSNGTSDRTTSPEEVHAQPYIAIDWEPEMKKRYYDEV--EAEGYVKHDC 769
Query: 81 ILHILGRNERIKPGPERFQECTEFFDVIFTCEE 113
+ +++ K P R QEC E F + T E+
Sbjct: 770 VGYVM------KKAPVRLQECIELFTTVETLEK 796
>gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens]
Length = 953
Score = 27.7 bits (60), Expect = 6.4
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 82 LHILGRNERIKPGPERFQECTEFFDV-IFTCEER---VYDTVVEDLCSREQQTFQPVHVI 137
LH G + P+ C V F E R VY + +C+ + Q ++
Sbjct: 565 LHTQGVLDTAALPPDPSSTCKRQLGVGAFPVESRWQGVYSPFRDFVCAGCPRDLQEA-LL 623
Query: 138 NMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKAGKSFL 188
D++ + E +L CE MED LEELL E KA + +L
Sbjct: 624 GFDVQSSRELRRSQDYLSCERTHPEDSVGSMEDILEELLQHREPKALQLYL 674
>gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens]
Length = 458
Score = 27.3 bits (59), Expect = 8.4
Identities = 14/65 (21%), Positives = 34/65 (52%)
Query: 119 VVEDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQ 178
++ DL E ++ PV +++ ++ + + L+ ++C + + D+E S ++LL
Sbjct: 176 MLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKD 235
Query: 179 MEEKA 183
+ E A
Sbjct: 236 LPELA 240
>gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens]
Length = 469
Score = 27.3 bits (59), Expect = 8.4
Identities = 14/65 (21%), Positives = 34/65 (52%)
Query: 119 VVEDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQ 178
++ DL E ++ PV +++ ++ + + L+ ++C + + D+E S ++LL
Sbjct: 187 MLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKD 246
Query: 179 MEEKA 183
+ E A
Sbjct: 247 LPELA 251
>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
sapiens]
Length = 638
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 84 ILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHVINMDIKD 143
IL + ER E+ Q+ D + E+ + ++ + LCS +++ + ++ ++K
Sbjct: 240 ILEQQER-----EKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQ 294
Query: 144 TLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKA 183
TL+ L + E+ E L+ Q+EE+A
Sbjct: 295 TLDE--------------LDKLQQKEEQAERLVKQLEEEA 320
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 84 ILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHVINMDIKD 143
IL + ER E+ Q+ D + E+ + ++ + LCS +++ + ++ ++K
Sbjct: 327 ILEQQER-----EKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQ 381
Query: 144 TLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKA 183
TL+ L + E+ E L+ Q+EE+A
Sbjct: 382 TLDE--------------LDKLQQKEEQAERLVKQLEEEA 407
>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
sapiens]
Length = 709
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 84 ILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHVINMDIKD 143
IL + ER E+ Q+ D + E+ + ++ + LCS +++ + ++ ++K
Sbjct: 311 ILEQQER-----EKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQ 365
Query: 144 TLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKA 183
TL+ L + E+ E L+ Q+EE+A
Sbjct: 366 TLDE--------------LDKLQQKEEQAERLVKQLEEEA 391
>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
sapiens]
Length = 724
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 84 ILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHVINMDIKD 143
IL + ER E+ Q+ D + E+ + ++ + LCS +++ + ++ ++K
Sbjct: 326 ILEQQER-----EKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQ 380
Query: 144 TLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKA 183
TL+ L + E+ E L+ Q+EE+A
Sbjct: 381 TLDE--------------LDKLQQKEEQAERLVKQLEEEA 406
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,848,065
Number of Sequences: 37866
Number of extensions: 336218
Number of successful extensions: 1019
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 15
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.