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Search of human proteins with 156616294
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156616294 peptidoglycan recognition protein 2 precursor
[Homo sapiens]
(576 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156616294 peptidoglycan recognition protein 2 precursor [Homo... 1179 0.0
gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens] 135 1e-31
gi|16418405 peptidoglycan recognition protein 3 precursor [Homo ... 133 4e-31
gi|56550073 peptidoglycan recognition protein-I-beta precursor [... 118 2e-26
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 38 0.022
gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens] 36 0.084
gi|28558973 mediator complex subunit 14 [Homo sapiens] 33 0.93
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens] 32 1.2
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 32 1.2
gi|8923219 tRNA methyltransferase 1 isoform 1 [Homo sapiens] 32 2.1
gi|209862871 tRNA methyltransferase 1 isoform 1 [Homo sapiens] 32 2.1
gi|216548445 tRNA methyltransferase 1 isoform 2 [Homo sapiens] 32 2.1
gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens] 32 2.1
gi|194595501 hypothetical protein LOC140699 isoform 1 [Homo sapi... 32 2.1
gi|239049118 linker for activation of T cells isoform d [Homo sa... 30 6.0
gi|62739157 linker for activation of T cells isoform c [Homo sap... 30 6.0
gi|62739155 linker for activation of T cells isoform b [Homo sap... 30 6.0
gi|7657293 linker for activation of T cells isoform a [Homo sapi... 30 6.0
gi|49355818 plexin A1 [Homo sapiens] 30 6.0
gi|45827729 scribble isoform b [Homo sapiens] 30 7.9
gi|45827731 scribble isoform a [Homo sapiens] 30 7.9
gi|40254844 receptor-interacting serine-threonine kinase 3 [Homo... 30 7.9
gi|19913414 adaptor-related protein complex 2, alpha 1 subunit i... 30 7.9
>gi|156616294 peptidoglycan recognition protein 2 precursor [Homo
sapiens]
Length = 576
Score = 1179 bits (3050), Expect = 0.0
Identities = 576/576 (100%), Positives = 576/576 (100%)
Query: 1 MAQGVLWILLGLLLWSDPGTASLPLLMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNS 60
MAQGVLWILLGLLLWSDPGTASLPLLMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNS
Sbjct: 1 MAQGVLWILLGLLLWSDPGTASLPLLMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNS 60
Query: 61 GPHNRLYHFLLGAWSLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVA 120
GPHNRLYHFLLGAWSLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVA
Sbjct: 61 GPHNRLYHFLLGAWSLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVA 120
Query: 121 VEPLLAGLEAGLQGRRVINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDV 180
VEPLLAGLEAGLQGRRVINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDV
Sbjct: 121 VEPLLAGLEAGLQGRRVINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDV 180
Query: 181 TTADIGANTPDATKGCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTFLRGSQTQSH 240
TTADIGANTPDATKGCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTFLRGSQTQSH
Sbjct: 181 TTADIGANTPDATKGCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTFLRGSQTQSH 240
Query: 241 PDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPEPRPSLSHLL 300
PDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPEPRPSLSHLL
Sbjct: 241 PDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPEPRPSLSHLL 300
Query: 301 SQYYGAGVARDPGFRSNFRRQNGAALTSASILAQQVWGTLVLLQRLEPVHLQLQCMSQEQ 360
SQYYGAGVARDPGFRSNFRRQNGAALTSASILAQQVWGTLVLLQRLEPVHLQLQCMSQEQ
Sbjct: 301 SQYYGAGVARDPGFRSNFRRQNGAALTSASILAQQVWGTLVLLQRLEPVHLQLQCMSQEQ 360
Query: 361 LAQVAANATKEFTEAFLGCPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCT 420
LAQVAANATKEFTEAFLGCPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCT
Sbjct: 361 LAQVAANATKEFTEAFLGCPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCT 420
Query: 421 DFTRCAANMRSMQRYHQDTQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGV 480
DFTRCAANMRSMQRYHQDTQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGV
Sbjct: 421 DFTRCAANMRSMQRYHQDTQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGV 480
Query: 481 AIVGNYTAALPTEAALRTVRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLR 540
AIVGNYTAALPTEAALRTVRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLR
Sbjct: 481 AIVGNYTAALPTEAALRTVRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLR 540
Query: 541 TWPHFTATVKPRPARSVSKRSRREPPPRTLPATDLQ 576
TWPHFTATVKPRPARSVSKRSRREPPPRTLPATDLQ
Sbjct: 541 TWPHFTATVKPRPARSVSKRSRREPPPRTLPATDLQ 576
>gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens]
Length = 196
Score = 135 bits (340), Expect = 1e-31
Identities = 70/169 (41%), Positives = 95/169 (56%), Gaps = 7/169 (4%)
Query: 379 CPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQD 438
C I PR W A L LPL ++ V HT C C R++Q YH
Sbjct: 30 CSPIVPRNEWKALASECAQHL-SLPLRYVVVSHT--AGSSCNTPASCQQQARNVQHYHMK 86
Query: 439 TQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGH--NSRGFGVAIVGNYTAALPTEAAL 496
T GW D+GY+F++G DG VYEGRGW++ GAH+ GH N G++ +GNY +PT A+
Sbjct: 87 TLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHS-GHLWNPMSIGISFMGNYMDRVPTPQAI 145
Query: 497 RTVRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHF 545
R + L +C V G LR +Y L GHR + RT PG+ L+ L++ WPH+
Sbjct: 146 RAAQGLL-ACGVAQGALRSNYVLKGHRDVQRTLSPGNQLYHLIQNWPHY 193
>gi|16418405 peptidoglycan recognition protein 3 precursor [Homo
sapiens]
Length = 341
Score = 133 bits (335), Expect = 4e-31
Identities = 71/167 (42%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Query: 379 CPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQD 438
CP I R W A PK+ LP ++ + HT CT T C +R++Q +H D
Sbjct: 178 CPNIIKRSAWEARETHC-PKM-NLPAKYVIIIHT--AGTSCTVSTDCQTVVRNIQSFHMD 233
Query: 439 TQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRT 498
T+ + DIGY F+VG DG VYEG GWH G+HT G N G+A +G + P AAL
Sbjct: 234 TRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEA 293
Query: 499 VRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHF 545
+D L CAV G L P+Y L+GH +V PG AL++++ TWPHF
Sbjct: 294 AQD-LIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHF 339
Score = 93.6 bits (231), Expect = 4e-19
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Query: 380 PAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDT 439
P I R WGA P R LL LP+ ++ +P C + C+ +R +Q + T
Sbjct: 21 PTIVSRKEWGARPLACRA-LLTLPVAYIITDQ--LPGMQCQQQSVCSQMLRGLQSHSVYT 77
Query: 440 QGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTV 499
GW D+ Y+F+VG DG VYEG GW+ G HT G+N+ G+A GN + P+ AAL +
Sbjct: 78 IGWCDVAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAAL-SA 136
Query: 500 RDTLPSCAVRAGLLRPDY 517
+ L S A++ G L P Y
Sbjct: 137 AEGLISYAIQKGHLSPRY 154
>gi|56550073 peptidoglycan recognition protein-I-beta precursor
[Homo sapiens]
Length = 373
Score = 118 bits (295), Expect = 2e-26
Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 368 ATKEFTEAFLGCPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAA 427
A ++ T CP + PR WGA P++ LP + + HT C C
Sbjct: 199 APRQKTSLKKACPGVVPRSVWGARETHC-PRMT-LPAKYGIIIHT--AGRTCNISDECRL 254
Query: 428 NMRSMQRYHQDTQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYT 487
+R +Q ++ D DIGY+F+VG DG +YEG GW+ G+ T G++ G+ +G +T
Sbjct: 255 LVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYEGVGWNVQGSSTPGYDDIALGITFMGTFT 314
Query: 488 AALPTEAALRTVRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHF 545
P AAL +D L CA+ G L P+Y L+GH + RT PG AL++++ TWPHF
Sbjct: 315 GIPPNAAALEAAQD-LIQCAMVKGYLTPNYLLVGHSDVARTLSPGQALYNIISTWPHF 371
Score = 84.7 bits (208), Expect = 2e-16
Identities = 56/159 (35%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 385 RCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGD 444
R WGA G L P+ L +HH VP C D T C+ +R +Q +H D
Sbjct: 58 RKAWGAEAV-GCSIQLTTPVNVLVIHH--VPGLECHDQTVCSQRLRELQAHHVHNNSGCD 114
Query: 445 IGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTVRDTLP 504
+ Y+F+VG DG VYEG GW+ G HT G+N+ G A G P+ AAL + + L
Sbjct: 115 VAYNFLVGDDGRVYEGVGWNIQGVHTQGYNNISLGFAFFGTKKGHSPSPAAL-SAMENLI 173
Query: 505 SCAVRAGLLRPDYA--LLG---------HRQLVRTDCPG 532
+ AV+ G L Y LLG + ++ CPG
Sbjct: 174 TYAVQKGHLSSSYVQPLLGKGENCLAPRQKTSLKKACPG 212
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 38.1 bits (87), Expect = 0.022
Identities = 55/220 (25%), Positives = 78/220 (35%), Gaps = 38/220 (17%)
Query: 75 SLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLAGLEAGLQG 134
S+ + DP PLSP L L E + + YG G + P+ L
Sbjct: 822 SMKLSPQDPRPLSPGALQLAGEKSSEKGLRERAYG----SSGELITSLPISIPLSTVQPN 877
Query: 135 RRVINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDVT-TADIGANTPDAT 193
+ +++PL S+ P + A R+T SP L+ P T IGAN A
Sbjct: 878 KLPVSIPLASVVLP-----------SRAERARSTPSPVLQPRDPSSTLEKQIGANAHGAG 926
Query: 194 KGCPDV---------QASLPDAKAKSPPTMVDSLLAVTL-----AGNLGLTFLRGSQTQS 239
+ ++ A A SP ++ TL +G+L T S T
Sbjct: 927 SRSLALAPAGFSYAGSVAISGALAGSPASLTPGAEPATLDESSSSGSLFATVGSRSSTPQ 986
Query: 240 HPDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDG 279
HP L L+ PR P L + L GA G
Sbjct: 987 HPLL--------LAQPRNSLPASPAHQLSSSPRLGGAAQG 1018
>gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens]
Length = 5890
Score = 36.2 bits (82), Expect = 0.084
Identities = 34/97 (35%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 121 VEPLLAGLEAGLQGRRV-INLP-LDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSP 178
VE L G EA ++G +V IN P +D W P V + S PG + P
Sbjct: 4746 VEGDLKGPEADIKGPKVDINTPDVDVHGPDWHL--KMPKV-----KMPKFSMPGFKGEGP 4798
Query: 179 DVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
DV ADI + P PDV PDAK K P
Sbjct: 4799 DVDVSLPKADIDVSGPKVDVDIPDVNIEGPDAKLKGP 4835
Score = 35.0 bits (79), Expect = 0.19
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 27/110 (24%)
Query: 115 DGSTVAVEPLLAGLEAGLQGRRVINLPLDSMAAPWETGDTFPDVVAIAPD---------V 165
D S VE L G E ++G +V +D+ PDV PD +
Sbjct: 2726 DVSLPKVEGDLKGPEVDIKGPKV---DIDA-----------PDVDVHGPDWHLKMPKIKM 2771
Query: 166 RATSSPGLRDGSPDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
S PG + PDV ADI + P CPDV P+ K KSP
Sbjct: 2772 PKISMPGFKGEGPDVDVNLPKADIDVSGPKVDVECPDVNIEGPEGKWKSP 2821
Score = 34.3 bits (77), Expect = 0.32
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 115 DGSTVAVEPLLAGLEAGLQGRRV-INLP-LDSMAAPWETGDTFPDVVAIAPDVRATSSPG 172
D S VE L G E ++G +V I++P +D W P V + S PG
Sbjct: 4148 DVSLPKVEGDLKGPEVDIKGPKVDIDVPDVDVQGPDWHL--KMPKV-----KMPKFSMPG 4200
Query: 173 LRDGSPDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
+ PDV AD+ + P PDV PDAK K P
Sbjct: 4201 FKGEGPDVDVNLPKADLDVSGPKVDIDVPDVNIEGPDAKLKGP 4243
Score = 33.1 bits (74), Expect = 0.71
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 121 VEPLLAGLEAGLQGRRV-INLPLDSMAAPWETGDTFPDVVAIAPDVRAT--SSPGLRDGS 177
V+ L LE L+G V I P + AP + PD P V+ S PG +
Sbjct: 3561 VDISLPKLEGDLKGPEVDIKGPKVDINAP-DVDVHGPDWHLKMPKVKMPKFSMPGFKGEG 3619
Query: 178 PDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
P+V ADI + P+ PDV PDAK K P
Sbjct: 3620 PEVDVTLPKADIDISGPNVDVDVPDVNIEGPDAKLKGP 3657
Score = 33.1 bits (74), Expect = 0.71
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 115 DGSTVAVEPLLAGLEAGLQGRRVINLPLDSMAAPWETGDTFPDVVAIAPDVRAT--SSPG 172
D S VE L G E ++G +V + AP + PD P V+ S PG
Sbjct: 4276 DVSLPKVEGDLKGPEVDIKGPKV------DIDAP-DVDVHGPDWHLKMPKVKMPKFSMPG 4328
Query: 173 LRDGSPDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
+ PDV ADI + P PDV PDAK K P
Sbjct: 4329 FKGEGPDVDVTLPKADIEISGPKVDIDAPDVSIEGPDAKLKGP 4371
Score = 33.1 bits (74), Expect = 0.71
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 169 SSPGLRDGSPDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
S PG + PDV ADI + P PDV PDAK K P
Sbjct: 4661 SMPGFKGEGPDVDVNLPKADIDVSGPKVDVDVPDVNIEGPDAKLKGP 4707
Score = 32.3 bits (72), Expect = 1.2
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 115 DGSTVAVEPLLAGLEAGLQGRRV-INLPLDSMAAPWETGDTFPDVVAIAPDVRAT--SSP 171
D S VE L G E ++G +V IN P + G PD P V+ S P
Sbjct: 2598 DVSLPKVEGDLKGPEVDIKGPKVDINAP--------DVGVQGPDWHLKMPKVKMPKFSMP 2649
Query: 172 GLRDGSPD----VTTADIGANTPDATKGCPDVQASLPDAKAKSP 211
G + PD + ADI + P PDV P+ K K P
Sbjct: 2650 GFKGEGPDGDVKLPKADIDVSGPKVDIEGPDVNIEGPEGKLKGP 2693
Score = 32.3 bits (72), Expect = 1.2
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 115 DGSTVAVEPLLAGLEAGLQGRRV-INLPLDSMAAPWETGDTFPDVVAIAPDVRAT--SSP 171
D S VE L G E ++G +V I++P + G PD P V+ S P
Sbjct: 2982 DISLPKVEGDLKGPEVDIRGPQVDIDVP--------DVGVQGPDWHLKMPKVKMPKFSMP 3033
Query: 172 GLRDGSPDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
G + PDV AD+ + P PDV P+ K K P
Sbjct: 3034 GFKGEGPDVDVNLPKADLDVSGPKVDIDVPDVNIEGPEGKLKGP 3077
Score = 32.0 bits (71), Expect = 1.6
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 156 PDVVAIAPD---------VRATSSPGLRDGSPDVTT----ADIGANTPDATKGCPDVQAS 202
PDV PD + S PG + P+V AD+G + P PDV
Sbjct: 1497 PDVEVHGPDWHLKMPKVKMPKFSMPGFKGEGPEVDMNLPKADLGVSGPKVDIDVPDVNLE 1556
Query: 203 LPDAKAKSPPTMVDSL 218
P+ K K P + S+
Sbjct: 1557 APEGKLKGPKFKMPSM 1572
Score = 31.2 bits (69), Expect = 2.7
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 156 PDVVAIAPD---------VRATSSPGLRDGSPDVTT----ADIGANTPDATKGCPDVQAS 202
PDV PD + S PG + P+V AD+ + P PDV
Sbjct: 3137 PDVDVQGPDWHLKMPKIKMPKISMPGFKGEGPEVDVNLPKADLDVSGPKVDVDVPDVNIE 3196
Query: 203 LPDAKAKSP 211
PDAK K P
Sbjct: 3197 GPDAKLKGP 3205
Score = 31.2 bits (69), Expect = 2.7
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 115 DGSTVAVEPLLAGLEAGLQGRRV-INLP-LDSMAAPWETGDTFPDVVAIAPDVRATSSPG 172
D S +E L G E ++G +V IN P +D W P V + S PG
Sbjct: 3764 DVSLPKMEGDLKGPEVDIKGPKVDINAPDVDVQGPDWHL--KMPKV-----KMPKFSMPG 3816
Query: 173 LRDGSPDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
+ PDV AD+ + P PDV P+ K K P
Sbjct: 3817 FKGEGPDVDVNLPKADLDVSGPKVDIDVPDVNIEGPEGKLKGP 3859
Score = 31.2 bits (69), Expect = 2.7
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 156 PDVVAIAPD---------VRATSSPGLRDGSPDVTT----ADIGANTPDATKGCPDVQAS 202
PDV PD + S PG + P+V AD+ + P PDV
Sbjct: 3919 PDVDVRGPDWHLKMPKIKMPKISMPGFKGEGPEVDVNLPKADLDVSGPKVDVDVPDVNIE 3978
Query: 203 LPDAKAKSP 211
PDAK K P
Sbjct: 3979 GPDAKLKGP 3987
Score = 30.8 bits (68), Expect = 3.5
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 169 SSPGLRDGSPDVTT----ADIGANTPDATKGCPDVQASLPDAKAKSP 211
S PG + P+V AD+ + P PDV PDAK K P
Sbjct: 1391 SMPGFKGEGPEVDVKLPKADVDVSGPKMDAEVPDVNIEGPDAKLKGP 1437
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 32.7 bits (73), Expect = 0.93
Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 35/183 (19%)
Query: 26 LMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNSGPHNRLYHFLLGAWSLNATELDPCP 85
+MDS+I L Q+ P K T+ A+ +++P + H+ +
Sbjct: 992 MMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQ----------------- 1034
Query: 86 LSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLA--GLEAGLQGRRVINLPLD 143
SP ++ H G + AP ++ P + G+ G P
Sbjct: 1035 -SPSMMHTQSPGNLHAASSPS--GALRAPSPASFVPTPPPSSHGISIG---------PGA 1082
Query: 144 SMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTPDATKGCPDVQASL 203
S A+P T D ++P RA + PG SP V+ A P + P + + +
Sbjct: 1083 SFASPHGTLDPSSPYTMVSPSGRAGNWPG----SPQVSGPSPAARMPGMSPANPSLHSPV 1138
Query: 204 PDA 206
PDA
Sbjct: 1139 PDA 1141
>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
Length = 895
Score = 32.3 bits (72), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 74 WSLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLAGLEAGLQ 133
W+ N L+PCP ++ GL++ +A D + + L PD ++ +G LQ
Sbjct: 659 WTNNTLPLEPCP-KEQIAGLSRRIAEDDGKPRPAFSNALEPDFKATSITVTGSGSCRHLQ 717
Query: 134 GRRVI-NLPLDSMAAPWETGDTFPD 157
V+ + S A P E D P+
Sbjct: 718 FIPVVPPRRVPSEAPPTEVPDRDPE 742
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 32.3 bits (72), Expect = 1.2
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 70 LLGAWSLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLAGLE 129
LLG + +A E CP P L + +A + + G EP LA
Sbjct: 728 LLGLQAASAQEPGCCPGLPHLCS-AQGLAPAPCLVTPSWTETASSGGDHPQAEPKLATEA 786
Query: 130 AGLQGRRVINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIG--- 186
G G R LPL S+ +P + G P A APD + L D T ++
Sbjct: 787 EGTTGPR---LPLPSVPSPSQEGAPLPSEEASAPD----APDALPDSPTPATGGEVSAIK 839
Query: 187 -ANTPDATKGCPDVQA 201
A+ + + P+V+A
Sbjct: 840 LASALNGSSSSPEVEA 855
>gi|8923219 tRNA methyltransferase 1 isoform 1 [Homo sapiens]
Length = 659
Score = 31.6 bits (70), Expect = 2.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 498 TVRDTLPSCA-VRAGLLRPDYAL-LGH--RQLVRTDCPGDALFDLLRTW 542
T+ PS +R+ LL D+ + L H + V+TD P AL+D++R W
Sbjct: 454 TIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCW 502
>gi|209862871 tRNA methyltransferase 1 isoform 1 [Homo sapiens]
Length = 659
Score = 31.6 bits (70), Expect = 2.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 498 TVRDTLPSCA-VRAGLLRPDYAL-LGH--RQLVRTDCPGDALFDLLRTW 542
T+ PS +R+ LL D+ + L H + V+TD P AL+D++R W
Sbjct: 454 TIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCW 502
>gi|216548445 tRNA methyltransferase 1 isoform 2 [Homo sapiens]
Length = 630
Score = 31.6 bits (70), Expect = 2.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 498 TVRDTLPSCA-VRAGLLRPDYAL-LGH--RQLVRTDCPGDALFDLLRTW 542
T+ PS +R+ LL D+ + L H + V+TD P AL+D++R W
Sbjct: 425 TIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCW 473
>gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens]
Length = 914
Score = 31.6 bits (70), Expect = 2.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 232 LRGSQTQSHPDLGTEGCWDQLSAPRTFTLLDPKASLLTMAF 272
L GSQT H W QL+ P T+LDP+ ++T F
Sbjct: 564 LEGSQTLYH--------WQQLAQPNLGTILDPRPGVITKGF 596
>gi|194595501 hypothetical protein LOC140699 isoform 1 [Homo
sapiens]
Length = 1052
Score = 31.6 bits (70), Expect = 2.1
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 332 LAQQVWGTLVLLQRLEPVHLQLQCMSQEQLAQVAANATKEFTEAFLGCPAIHPRCRWGAA 391
L W LL++L+ H + +QE++A VA AT E FLG R AA
Sbjct: 573 LPSTTWILWRLLRKLQKCHNE---PAQEKMAYVAVAATDALYEVFLG-------NRLRAA 622
Query: 392 PYRGRPKLLQLPLGFLYVHHT 412
+R P+LL L + +HH+
Sbjct: 623 TFRLFPQLLMTLL--IQIHHS 641
>gi|239049118 linker for activation of T cells isoform d [Homo
sapiens]
Length = 269
Score = 30.0 bits (66), Expect = 6.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 153 DTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTP----------DATKGCPDVQAS 202
D+ P AP A S+PG+RD + + + D N P D ++ +V
Sbjct: 174 DSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQE 233
Query: 203 LPDAKAKSPPTMVDS 217
L AK+ P + S
Sbjct: 234 LHPGAAKTEPAALSS 248
>gi|62739157 linker for activation of T cells isoform c [Homo
sapiens]
Length = 232
Score = 30.0 bits (66), Expect = 6.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 153 DTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTP----------DATKGCPDVQAS 202
D+ P AP A S+PG+RD + + + D N P D ++ +V
Sbjct: 137 DSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQE 196
Query: 203 LPDAKAKSPPTMVDS 217
L AK+ P + S
Sbjct: 197 LHPGAAKTEPAALSS 211
>gi|62739155 linker for activation of T cells isoform b [Homo
sapiens]
Length = 233
Score = 30.0 bits (66), Expect = 6.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 153 DTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTP----------DATKGCPDVQAS 202
D+ P AP A S+PG+RD + + + D N P D ++ +V
Sbjct: 138 DSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQE 197
Query: 203 LPDAKAKSPPTMVDS 217
L AK+ P + S
Sbjct: 198 LHPGAAKTEPAALSS 212
>gi|7657293 linker for activation of T cells isoform a [Homo
sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 6.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 153 DTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTP----------DATKGCPDVQAS 202
D+ P AP A S+PG+RD + + + D N P D ++ +V
Sbjct: 167 DSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQE 226
Query: 203 LPDAKAKSPPTMVDS 217
L AK+ P + S
Sbjct: 227 LHPGAAKTEPAALSS 241
>gi|49355818 plexin A1 [Homo sapiens]
Length = 1873
Score = 30.0 bits (66), Expect = 6.0
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 325 ALTSASILAQQVWGTLVLLQR-LEPVHLQLQCMSQEQLAQVAANATKEFTEAFLGCPAIH 383
AL S++AQ+ G+ +L L P H L M+++Q+ +V + ++T L +
Sbjct: 449 ALAYESVVAQE--GSPILRDLVLSPNHQYLYAMTEKQVTRVPVESCVQYTSCELCLGSRD 506
Query: 384 PRCRW 388
P C W
Sbjct: 507 PHCGW 511
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 29.6 bits (65), Expect = 7.9
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 170 SPGLRDGSPDVTTADIGANTPDATKGCPDVQASLPD--AKAKSPPTMVDSLLAVTLAGNL 227
SP P A T AT G P + + P A A P V+ + G L
Sbjct: 957 SPLPHSSPPTAAVATTSITT--ATPGVPGLPSLAPSLLAAALEGPYPVEEIRLPRAGGPL 1014
Query: 228 GLTFLRGSQTQSHP 241
GL+ + GS SHP
Sbjct: 1015 GLSIVGGSDHSSHP 1028
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 29.6 bits (65), Expect = 7.9
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 170 SPGLRDGSPDVTTADIGANTPDATKGCPDVQASLPD--AKAKSPPTMVDSLLAVTLAGNL 227
SP P A T AT G P + + P A A P V+ + G L
Sbjct: 957 SPLPHSSPPTAAVATTSITT--ATPGVPGLPSLAPSLLAAALEGPYPVEEIRLPRAGGPL 1014
Query: 228 GLTFLRGSQTQSHP 241
GL+ + GS SHP
Sbjct: 1015 GLSIVGGSDHSSHP 1028
>gi|40254844 receptor-interacting serine-threonine kinase 3 [Homo
sapiens]
Length = 518
Score = 29.6 bits (65), Expect = 7.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 14/54 (25%)
Query: 249 WDQLSAPRTFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPEPRPSLSHLLSQ 302
WDQ DPK +L+T NG+L G++ S+ P P P L LL +
Sbjct: 84 WDQ----------DPKPALVTKFMENGSLSGLL----QSQCPRPWPLLCRLLKE 123
>gi|19913414 adaptor-related protein complex 2, alpha 1 subunit
isoform 1 [Homo sapiens]
Length = 977
Score = 29.6 bits (65), Expect = 7.9
Identities = 79/300 (26%), Positives = 104/300 (34%), Gaps = 50/300 (16%)
Query: 125 LAGLEAGLQGRRVINLPLDSMAAP------WETGDTFPD-VVAIAPDVRATSSPG----L 173
L + LQ R V L L S+A+ E FP+ +I ++ PG L
Sbjct: 569 LRNADVELQQRAVEYLTLSSVASTDVLATVLEEMPPFPERESSILAKLKRKKGPGAGSAL 628
Query: 174 RDGSPDVTTADI--GANTPDATKGCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTF 231
DG D ++ DI G +T P A L +A PP + AGNL +
Sbjct: 629 DDGRRDPSSNDINGGMEPTPSTVSTPSPSADLLGLRAAPPPAAPPASAG---AGNLLVDV 685
Query: 232 LRGSQTQSHPDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPE 291
G Q P LG LS L+P A MA L G
Sbjct: 686 FDGPAAQ--PSLGPTPEEAFLSE------LEPPAPESPMALLADPAPAADPGP--EDIGP 735
Query: 292 PRPSLSHLLSQYY--GAGVARDP-----GFRSNFRRQNGAAL----TSASILAQQVWGTL 340
P P LL+++ GV + G +S FR+ G S+ Q T+
Sbjct: 736 PIPEADELLNKFVCKNNGVLFENQLLQIGVKSEFRQNLGRMYLFYGNKTSVQFQNFSPTV 795
Query: 341 VLLQRLEPVHLQLQCMSQEQL--------AQVAANATKEFTEAFLGCPAIHPRCRWGAAP 392
V P LQ Q Q + AQV E FL P + R R+G AP
Sbjct: 796 V-----HPGDLQTQLAVQTKRVAAQVDGGAQVQQVLNIECLRDFLTPPLLSVRFRYGGAP 850
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,361,009
Number of Sequences: 37866
Number of extensions: 1169192
Number of successful extensions: 3187
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3125
Number of HSP's gapped (non-prelim): 73
length of query: 576
length of database: 18,247,518
effective HSP length: 108
effective length of query: 468
effective length of database: 14,157,990
effective search space: 6625939320
effective search space used: 6625939320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.