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Search of human proteins with 110349730
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo
sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo sapi... 541 e-154
gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo sapi... 534 e-152
gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo sapi... 534 e-152
gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo sapi... 488 e-138
gi|226061595 TatD DNase domain containing 3 isoform 3 [Homo sapi... 444 e-125
gi|14042943 TatD DNase domain containing 1 isoform a [Homo sapiens] 69 3e-12
gi|225903439 TatD DNase domain containing 1 isoform b [Homo sapi... 64 2e-10
gi|225903424 TatD DNase domain containing 2 [Homo sapiens] 49 6e-06
gi|32698724 patatin-like phospholipase domain containing 2 [Homo... 30 2.3
gi|148806891 hypothetical protein LOC54906 [Homo sapiens] 30 3.0
gi|103472001 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,... 29 5.1
gi|52485853 integrin, alpha 11 precursor [Homo sapiens] 28 6.6
gi|134254462 ribosomal modification protein rimK-like family mem... 28 6.6
gi|143770880 laminin, beta 4 [Homo sapiens] 28 8.6
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 28 8.6
gi|222418558 methylenetetrahydrofolate dehydrogenase 2-like [Hom... 28 8.6
>gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo
sapiens]
Length = 274
Score = 541 bits (1393), Expect = e-154
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE 240
EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE 240
Query: 241 YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 274
YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK
Sbjct: 241 YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 274
>gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo
sapiens]
Length = 273
Score = 534 bits (1376), Expect = e-152
Identities = 273/274 (99%), Positives = 273/274 (99%), Gaps = 1/274 (0%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE 240
EGVRAGYFFSIPPSIIRSGQ QKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQ-QKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE 239
Query: 241 YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 274
YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK
Sbjct: 240 YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 273
>gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo
sapiens]
Length = 281
Score = 534 bits (1375), Expect = e-152
Identities = 274/281 (97%), Positives = 274/281 (97%), Gaps = 7/281 (2%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQ-------KQKLVKQLPLTSICLETDSPALGPEKQVRNEPW 233
EGVRAGYFFSIPPSIIRSGQ KQKLVKQLPLTSICLETDSPALGPEKQVRNEPW
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQVRNEPW 240
Query: 234 NISISAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 274
NISISAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK
Sbjct: 241 NISISAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 281
>gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo
sapiens]
Length = 253
Score = 488 bits (1257), Expect = e-138
Identities = 253/274 (92%), Positives = 253/274 (92%), Gaps = 21/274 (7%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLK VGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLK---------------------VGLDFSPRFAGTG 99
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 100 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 159
Query: 181 EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE 240
EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE
Sbjct: 160 EGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAE 219
Query: 241 YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 274
YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK
Sbjct: 220 YIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK 253
>gi|226061595 TatD DNase domain containing 3 isoform 3 [Homo
sapiens]
Length = 240
Score = 444 bits (1141), Expect = e-125
Identities = 227/234 (97%), Positives = 227/234 (97%), Gaps = 7/234 (2%)
Query: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN
Sbjct: 1 MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYN 60
Query: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG
Sbjct: 61 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTG 120
Query: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM
Sbjct: 121 EQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAM 180
Query: 181 EGVRAGYFFSIPPSIIRSGQ-------KQKLVKQLPLTSICLETDSPALGPEKQ 227
EGVRAGYFFSIPPSIIRSGQ KQKLVKQLPLTSICLETDSPALGPEKQ
Sbjct: 181 EGVRAGYFFSIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQ 234
>gi|14042943 TatD DNase domain containing 1 isoform a [Homo sapiens]
Length = 297
Score = 69.3 bits (168), Expect = 3e-12
Identities = 63/271 (23%), Positives = 123/271 (45%), Gaps = 36/271 (13%)
Query: 23 DLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQ-GLPPEDQR 81
DL DV+ +A + V + + + + + L++ NG +G HP + G ++
Sbjct: 31 DLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQT-NGMFFSTVGCHPTRCGEFEKNNP 89
Query: 82 SVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFAGTGEQKEEQRQVLIRQIQLAKRL 140
+ LK+L L + EN K +++AIGE GLDF +F K+ Q + +Q +L+++
Sbjct: 90 DLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC----PKDTQLKYFEKQFELSEQT 142
Query: 141 NLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGRPSVAMEGVRAGYFFSIPPSIIRS 198
LP+ +H R++ +++++ V ++H+FDG A + + +++
Sbjct: 143 KLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKT 202
Query: 199 GQKQKLVKQLPLTSICLETDSPALG---------------PEKQV---------RNEPWN 234
+++K +P + +ETD+P G P K+ RNEP +
Sbjct: 203 EANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCH 262
Query: 235 ISISAEYIAQVKGISVEEVIEVTTQNALKLF 265
I E ++ V+ E+ N +K+F
Sbjct: 263 IIQILEIMSAVRDEDPLELANTLYNNTIKVF 293
>gi|225903439 TatD DNase domain containing 1 isoform b [Homo
sapiens]
Length = 250
Score = 63.5 bits (153), Expect = 2e-10
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 60 NGFVLPCLGVHPVQ-GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSP-RFA 117
NG +G HP + G ++ + LK+L L + EN K +++AIGE GLDF +F
Sbjct: 20 NGMFFSTVGCHPTRCGEFEKNNPDLYLKEL---LNLAENNKGKVVAIGECGLDFDRLQFC 76
Query: 118 GTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LLHAFDGR 175
K+ Q + +Q +L+++ LP+ +H R++ +++++ V ++H+FDG
Sbjct: 77 ----PKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGT 132
Query: 176 PSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALG------------ 223
A + + +++ +++K +P + +ETD+P G
Sbjct: 133 KEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIR 192
Query: 224 ---PEKQV---------RNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 265
P K+ RNEP +I E ++ V+ E+ N +K+F
Sbjct: 193 TAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 246
>gi|225903424 TatD DNase domain containing 2 [Homo sapiens]
Length = 761
Score = 48.5 bits (114), Expect = 6e-06
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 101 RLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQ 160
+ +A GE+GLD+S + EQ +V RQ+QLA L P+ +H R A + +++
Sbjct: 587 KAVAFGEMGLDYSYKCT---TPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMK 643
Query: 161 E--QGAEKVLLHAFDGRPSVAMEGVRAGYF------FSIPPSIIRSGQKQKLVKQLPLTS 212
+ K+ H F G V ++ YF F+ + + + ++ ++Q+PL
Sbjct: 644 KFVPPDYKIHRHCFTGSYPVIEPLLK--YFPNMSVGFTAVLTYSSAWEAREALRQIPLER 701
Query: 213 ICLETDSPALGPEKQVRN-----EPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 265
I +ETD+P P + ++ P + IA+VK + + +N +L+
Sbjct: 702 IIVETDAPYFLPRQVPKSLCQYAHPGLALHTVREIARVKDQPLSLTLAALRENTSRLY 759
>gi|32698724 patatin-like phospholipase domain containing 2 [Homo
sapiens]
Length = 504
Score = 30.0 bits (66), Expect = 2.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 142 LPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVRAG----YFFSIPPSI 195
LP + H ++GR I+L + E V++ F+ + + V +G Y IPPS+
Sbjct: 102 LPADSHEHASGRLGISLTRVSDGENVIISHFNSKDELIQANVCSGFIPVYCGLIPPSL 159
>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
Length = 2430
Score = 29.6 bits (65), Expect = 3.0
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 21/134 (15%)
Query: 116 FAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTI------NLLQEQGAEKVLL 169
F G + ++Q+Q++ + L + H GRPT+ ++ + E +
Sbjct: 1455 FVGPTHPVGQDNFTQVQQMQVSAEMPLILTDHPGRTGRPTLPGKVTEEIVSSEHDEGL-- 1512
Query: 170 HAFDGRPSV--------AMEGVRAGYFFSIPPSIIRSGQKQKLV----KQLPLTSICLET 217
+F G+ A G F P +++SG + V + L L + LE+
Sbjct: 1513 -SFSGKVQCYGRELNQPASAAKCTGDFSPSPEKLVKSGNPLQPVSIENRNLDLKHLVLES 1571
Query: 218 DSPALGPEKQVRNE 231
P GP + N+
Sbjct: 1572 SEPPFGPRNVIENK 1585
>gi|103472001 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7,
14.5kDa [Homo sapiens]
Length = 113
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 184 RAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYI 242
R G S+PPSII S QK + + +S T+ A+ P ++ W +S Y+
Sbjct: 57 RDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKR--WELSSDQPYL 113
>gi|52485853 integrin, alpha 11 precursor [Homo sapiens]
Length = 1188
Score = 28.5 bits (62), Expect = 6.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 31 AKKANVVALVAVAEHSGEFEKIMQLSERYN--GFVLPCLGVHPVQGLPPE 78
AKK +V + S + EK++Q SER N + + LG + +G+ PE
Sbjct: 262 AKKVMIVITDGESHDSPDLEKVIQQSERDNVTRYAVAVLGYYNRRGINPE 311
>gi|134254462 ribosomal modification protein rimK-like family member
B [Homo sapiens]
Length = 386
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 171 AFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGP 224
AFD ++ + G+ A Y S+ PS G+ + + L + S ET P LGP
Sbjct: 286 AFDKACNLDVAGIIADYAASLLPS----GRLTRRMSLLSVVSTASETSEPELGP 335
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 28.1 bits (61), Expect = 8.6
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 73 QGLPPEDQRSVTLKDLDVALPI-IENYKDRLLAIG---EVGLDFSPRFAGTGEQKEEQRQ 128
+ +PPED V LD+ LPI +N D L+ I ++ D+ E+ + ++
Sbjct: 1492 ENVPPEDIEKVANGVLDIHLPIPSQNLTDELVKIQKHMQLCEDYRTDENRLNEEADGAQK 1551
Query: 129 VLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQE 161
+L++ K N+ +N+ T+N LQ+
Sbjct: 1552 LLVKAKAAEKAANILLNLDK------TLNQLQQ 1578
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 28.1 bits (61), Expect = 8.6
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 202 QKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQVKGISVE-EVIEVTTQN 260
Q L +QL + + L + A +RN PW +++ + Y+ ++ V+ +VI VT +
Sbjct: 352 QYLDRQLKVKDLVLSVHNRA------IRNCPWTVALWSRYLLAMERHGVDHQVISVTFEK 405
Query: 261 AL 262
AL
Sbjct: 406 AL 407
>gi|222418558 methylenetetrahydrofolate dehydrogenase 2-like [Homo
sapiens]
Length = 347
Score = 28.1 bits (61), Expect = 8.6
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 209 PLTSICLETDSPALGPEKQVRNE---PWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 265
P SI L D+PA VRN+ + I +E I + K +S EE+++VT Q L +
Sbjct: 82 PHLSIILVGDNPA--SHTYVRNKIRAASAVGICSELILKPKDVSQEELLDVTDQ--LNMD 137
Query: 266 PKLRHLL 272
P++ +L
Sbjct: 138 PRVSGIL 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,085,106
Number of Sequences: 37866
Number of extensions: 440946
Number of successful extensions: 1225
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 17
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.