Search of human proteins with 156415992

Search of human proteins with 156415992

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156415992 transcription factor B1, mitochondrial [Homo
sapiens]
         (346 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156415992 transcription factor B1, mitochondrial [Homo sapiens]    692   0.0  
gi|7657198 dimethyladenosine transferase [Homo sapiens]                74   1e-13
gi|11641289 transcription factor B2, mitochondrial [Homo sapiens]      56   5e-08
gi|19718764 ubiquitin protein ligase E3A isoform 3 [Homo sapiens]      30   3.2  
gi|19718762 ubiquitin protein ligase E3A isoform 1 [Homo sapiens]      30   3.2  
gi|19718766 ubiquitin protein ligase E3A isoform 2 [Homo sapiens]      30   3.2  
gi|148839339 nexilin (F actin binding protein) [Homo sapiens]          29   5.4  
gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a ...    29   5.4  
gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b ...    29   5.4  
gi|222537743 protein tyrosine phosphatase, receptor type, Q [Hom...    28   9.2  

>gi|156415992 transcription factor B1, mitochondrial [Homo sapiens]
          Length = 346

 Score =  692 bits (1787), Expect = 0.0
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60
           MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY
Sbjct: 1   MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60

Query: 61  EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA 120
           EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA
Sbjct: 61  EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA 120

Query: 121 FSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEV 180
           FSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEV
Sbjct: 121 FSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEV 180

Query: 181 AERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQ 240
           AERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQ
Sbjct: 181 AERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQ 240

Query: 241 PFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHF 300
           PFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHF
Sbjct: 241 PFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHF 300

Query: 301 KSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENYRL 346
           KSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENYRL
Sbjct: 301 KSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENYRL 346


>gi|7657198 dimethyladenosine transferase [Homo sapiens]
          Length = 313

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 26/206 (12%)

Query: 33  LSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNADVAELLVVEKDTRFIP 92
           + Q+ L +  + + I+ KA       V EVGPG G +T  +L     +++  E D R + 
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVA 92

Query: 93  GLQMLSDAAP--GKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPL 150
            L       P   KL+++ GDVL  K +  F ++              + NLP+ +S+P 
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVL--KTDLPFFDTC-------------VANLPYQISSPF 137

Query: 151 IIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRLSVMAQYLCNVRHIF 210
           + K L +      PF        L FQ+E A RL A  G K   RLS+  Q L  V H+ 
Sbjct: 138 VFKLLLH-----RPFF---RCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189

Query: 211 TIPGQAFVPKPEVDVGVVHFTPLIQP 236
            +    F P P+V+  VV   P   P
Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPP 215


>gi|11641289 transcription factor B2, mitochondrial [Homo sapiens]
          Length = 396

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 22/175 (12%)

Query: 61  EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA 120
           E  PGPG +T+++L A  A+++ +E D  FIP L+ L     GKLR++H D   FK++  
Sbjct: 101 ECNPGPGILTQALLEAG-AKVVALESDKTFIPHLESLGKNLDGKLRVIHCDF--FKLDPR 157

Query: 121 FSESLKR-----------------PWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDG 163
               +K                  PW  D P + ++G  P       + K   ++     
Sbjct: 158 SGGVIKPPAMSSRGLFKNLGIEAVPWTADIP-LKVVGMFPSRGEKRALWKLAYDLYSCTS 216

Query: 164 PFVYGRTQMTLTFQKEVAERLAANTGSKQRSR-LSVMAQYLCNVRHIFTIPGQAF 217
            + +GR ++ +   ++  ++L A+ G+      LSV+ Q  C ++ +   P  +F
Sbjct: 217 IYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSF 271


>gi|19718764 ubiquitin protein ligase E3A isoform 3 [Homo sapiens]
          Length = 872

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 262 RGLRMLFPEAQRL--ESTGRLLELA----DIDPTLRPRQLSISHFKSLCDVYRKMCDEDP 315
           +G R+ F +   L  E    +LEL     D  P +R      S  ++L   +RK+     
Sbjct: 113 KGARIDFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKV----- 167

Query: 316 QLFAYNFREELKRRKSKNEEKEEDDAE 342
                + +EELK  ++K+E+K+ED+ E
Sbjct: 168 ---KQHTKEELKSLQAKDEDKDEDEKE 191


>gi|19718762 ubiquitin protein ligase E3A isoform 1 [Homo sapiens]
          Length = 852

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 262 RGLRMLFPEAQRL--ESTGRLLELA----DIDPTLRPRQLSISHFKSLCDVYRKMCDEDP 315
           +G R+ F +   L  E    +LEL     D  P +R      S  ++L   +RK+     
Sbjct: 93  KGARIDFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKV----- 147

Query: 316 QLFAYNFREELKRRKSKNEEKEEDDAE 342
                + +EELK  ++K+E+K+ED+ E
Sbjct: 148 ---KQHTKEELKSLQAKDEDKDEDEKE 171


>gi|19718766 ubiquitin protein ligase E3A isoform 2 [Homo sapiens]
          Length = 875

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 262 RGLRMLFPEAQRL--ESTGRLLELA----DIDPTLRPRQLSISHFKSLCDVYRKMCDEDP 315
           +G R+ F +   L  E    +LEL     D  P +R      S  ++L   +RK+     
Sbjct: 116 KGARIDFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKV----- 170

Query: 316 QLFAYNFREELKRRKSKNEEKEEDDAE 342
                + +EELK  ++K+E+K+ED+ E
Sbjct: 171 ---KQHTKEELKSLQAKDEDKDEDEKE 194


>gi|148839339 nexilin (F actin binding protein) [Homo sapiens]
          Length = 675

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 22/117 (18%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 228 VHFTPLIQPKIEQPFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADID 287
           ++F  L++ K+E+  +  E+  ++  +  ++   +  + +  E +  E+ G   E  ++ 
Sbjct: 376 INFEELLKQKMEEEKRRTEEERKHKLEMEKQEFEQLRQEMGEEEEENETFGLSREYEELI 435

Query: 288 PTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENY 344
              R   +   + KS  +   ++ +++ Q       EE  RR++ + E +E +AEN+
Sbjct: 436 KLKRSGSIQAKNLKSKFEKIGQLSEKEIQK---KIEEERARRRAIDLEIKEREAENF 489


>gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a
           [Homo sapiens]
          Length = 639

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 303 LCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEED 339
           LC   RK   EDP ++    +EEL+R K++ ++K+ +
Sbjct: 52  LCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNE 88


>gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b
           [Homo sapiens]
          Length = 572

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 303 LCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEED 339
           LC   RK   EDP ++    +EEL+R K++ ++K+ +
Sbjct: 52  LCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNE 88


>gi|222537743 protein tyrosine phosphatase, receptor type, Q [Homo
            sapiens]
          Length = 2299

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 122  SESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLE 156
            +++L  P +  P NVH++   PFS+S    I W E
Sbjct: 1531 TKTLPGPPDGPPENVHVVATSPFSIS----ISWSE 1561


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,573,948
Number of Sequences: 37866
Number of extensions: 595953
Number of successful extensions: 1758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1751
Number of HSP's gapped (non-prelim): 10
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.