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Search of human proteins with 155029542
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|155029542 BEN domain containing 7 isoform 1 [Homo sapiens]
(468 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155029542 BEN domain containing 7 isoform 1 [Homo sapiens] 935 0.0
gi|155029544 BEN domain containing 7 isoform 2 [Homo sapiens] 702 0.0
gi|16418383 transcriptional repressor NAC1 [Homo sapiens] 47 4e-05
gi|21389533 BTB (POZ) domain containing 14A [Homo sapiens] 46 8e-05
gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 43 5e-04
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 33 0.55
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 33 0.55
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 33 0.55
gi|71773110 apolipoprotein A-IV precursor [Homo sapiens] 32 1.2
gi|134152721 transmembrane protein 214 isoform 1 [Homo sapiens] 32 1.2
gi|52426743 cisplatin resistance-associated overexpressed protei... 32 1.2
gi|19923485 cisplatin resistance-associated overexpressed protei... 32 1.2
gi|212276104 leucine rich repeat (in FLII) interacting protein 1... 32 1.6
gi|212276096 leucine rich repeat (in FLII) interacting protein 1... 32 1.6
gi|212276070 leucine rich repeat (in FLII) interacting protein 1... 32 1.6
gi|117190342 PHD finger protein 2 [Homo sapiens] 32 1.6
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 31 2.8
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 31 2.8
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 31 2.8
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 31 2.8
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 31 2.8
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 31 2.8
gi|27363480 hypothetical protein LOC55262 [Homo sapiens] 31 2.8
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 31 2.8
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 31 2.8
gi|114842396 ankyrin-repeat and fibronectin type III domain cont... 30 4.7
gi|34328899 protein tyrosine phosphatase, non-receptor type 14 [... 30 4.7
gi|38202222 fibronectin leucine rich transmembrane protein 3 pre... 30 4.7
gi|7019383 fibronectin leucine rich transmembrane protein 3 prec... 30 4.7
gi|119943102 CREB binding protein isoform b [Homo sapiens] 30 6.1
>gi|155029542 BEN domain containing 7 isoform 1 [Homo sapiens]
Length = 468
Score = 935 bits (2416), Expect = 0.0
Identities = 468/468 (100%), Positives = 468/468 (100%)
Query: 1 MEIKKQITGMRRLLNDSTGRIYQRVGKEGEKLKEEPQDLDLVWPPRLNSSAEAPQSLHPS 60
MEIKKQITGMRRLLNDSTGRIYQRVGKEGEKLKEEPQDLDLVWPPRLNSSAEAPQSLHPS
Sbjct: 1 MEIKKQITGMRRLLNDSTGRIYQRVGKEGEKLKEEPQDLDLVWPPRLNSSAEAPQSLHPS 60
Query: 61 SRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTL 120
SRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTL
Sbjct: 61 SRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTL 120
Query: 121 QAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVK 180
QAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVK
Sbjct: 121 QAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVK 180
Query: 181 QKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPSSDPEVQLAEGFDVFM 240
QKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPSSDPEVQLAEGFDVFM
Sbjct: 181 QKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPSSDPEVQLAEGFDVFM 240
Query: 241 PKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLNDNRKGLDQNIVGA 300
PKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLNDNRKGLDQNIVGA
Sbjct: 241 PKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLNDNRKGLDQNIVGA 300
Query: 301 IKVFTEKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGSAEIADSDERLDGIALPPT 360
IKVFTEKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGSAEIADSDERLDGIALPPT
Sbjct: 301 IKVFTEKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGSAEIADSDERLDGIALPPT 360
Query: 361 GACGGPCTVLPGGSAAVTLVLQSSPQTMSQEKGQMAEPWEEQHLVLLNNLTRDRAETGAL 420
GACGGPCTVLPGGSAAVTLVLQSSPQTMSQEKGQMAEPWEEQHLVLLNNLTRDRAETGAL
Sbjct: 361 GACGGPCTVLPGGSAAVTLVLQSSPQTMSQEKGQMAEPWEEQHLVLLNNLTRDRAETGAL 420
Query: 421 SQTSQDFKHHSFLITQVSATLHHQRGIRNFPTPGSAKSLTLHISCLSL 468
SQTSQDFKHHSFLITQVSATLHHQRGIRNFPTPGSAKSLTLHISCLSL
Sbjct: 421 SQTSQDFKHHSFLITQVSATLHHQRGIRNFPTPGSAKSLTLHISCLSL 468
>gi|155029544 BEN domain containing 7 isoform 2 [Homo sapiens]
Length = 374
Score = 702 bits (1813), Expect = 0.0
Identities = 359/373 (96%), Positives = 359/373 (96%), Gaps = 14/373 (3%)
Query: 1 MEIKKQITGMRRLLNDSTGRIYQRVGKEGEKLKEEPQDLDLVWPPRLNSSAEAPQSLHPS 60
MEIKKQITGMRRLLNDSTGRIYQRVGKEGEKLKEEPQDLDLVWPPRLNSSAEAPQSLHPS
Sbjct: 1 MEIKKQITGMRRLLNDSTGRIYQRVGKEGEKLKEEPQDLDLVWPPRLNSSAEAPQSLHPS 60
Query: 61 SRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNG-------------ELPVVNSSA 107
SRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNG ELPVVNSSA
Sbjct: 61 SRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGMVVNKHSEGSHGGELPVVNSSA 120
Query: 108 GSNCCTCNCQSTLQAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNKKK 167
GSNCCTCNCQSTLQAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNKKK
Sbjct: 121 GSNCCTCNCQSTLQAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNKKK 180
Query: 168 KVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPSSD 227
KVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPSSD
Sbjct: 181 KVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPSSD 240
Query: 228 PEVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLN 287
PEVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLN
Sbjct: 241 PEVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLN 300
Query: 288 DNRKGLDQNIVGAIKVFTEKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGSAEIAD 347
DNRKGLDQNIVGAIKVFTEKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGS EIAD
Sbjct: 301 DNRKGLDQNIVGAIKVFTEKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGS-EIAD 359
Query: 348 SDERLDGIALPPT 360
SDERLDGIALPPT
Sbjct: 360 SDERLDGIALPPT 372
>gi|16418383 transcriptional repressor NAC1 [Homo sapiens]
Length = 527
Score = 47.0 bits (110), Expect = 4e-05
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 229 EVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLND 288
+++L G +V++ ++QL + + +L R+L+ +FFD TLANS G R +
Sbjct: 368 KLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDP 427
Query: 289 NRKGLDQNIVGAIKVFTEKY 308
RK LD ++ A+K + + +
Sbjct: 428 RRKPLDSRVLHAVKYYCQNF 447
>gi|21389533 BTB (POZ) domain containing 14A [Homo sapiens]
Length = 587
Score = 45.8 bits (107), Expect = 8e-05
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 229 EVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGLND 288
+++L G V++ + QL + +L R+L+ FFD TLANS G R +
Sbjct: 345 KLELVAGSGVYITRGQLMNCHLCAGVKHKVLLRRLLATFFDRNTLANSCGTGIRSSTSDP 404
Query: 289 NRKGLDQNIVGAIKVFTEKY 308
+RK LD ++ A+K++ + +
Sbjct: 405 SRKPLDSRVLNAVKLYCQNF 424
>gi|148762950 BEN domain containing 4 isoform a [Homo sapiens]
Length = 534
Score = 43.1 bits (100), Expect = 5e-04
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 219 IVLESPSSDP---EVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLAN 275
+++ P+ P QL + V++ Q D +++ + G L R L+ F L
Sbjct: 371 LLIPQPADQPTEGSKQLLNNYPVYITSKQWDEAVNSSKKDGRRLLRYLIRFVFTTDELKY 430
Query: 276 SLPNGKRKRGLNDNRKGLDQNIVGAIKV-----FTEKYCTANHVDKLPGPRDWVQILQDQ 330
S GKRKR + G ++ + +KV F +CT+N +P ++ D
Sbjct: 431 SCGLGKRKRSVQSGETGPERRPLDPVKVTCLREFIRMHCTSNPDWWMPSEEQINKVFSDA 490
Query: 331 IKLARR 336
+ AR+
Sbjct: 491 VGHARQ 496
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 33.1 bits (74), Expect = 0.55
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 103 VNSSAGSNCCTCNCQSTLQAILQELKTM-------RKLMQIQAVGTQNRQQPPISLICSQ 155
+ S GSNC TL ++ + + +K + + + + + P C +
Sbjct: 1812 LKSEPGSNCDNSELPGTLHNSHKKRRNISDLNHPHKKQRKETDLTNKEKTKKPTQDSC-E 1870
Query: 156 RTAVSRKRNKKKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSA 200
T +K+ KKK PP T +P ++K P + ++ LSA
Sbjct: 1871 NTEAHQKKASKKKAPPVTKDPSSLKATPGIKDSSAALATSTSLSA 1915
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 33.1 bits (74), Expect = 0.55
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 103 VNSSAGSNCCTCNCQSTLQAILQELKTM-------RKLMQIQAVGTQNRQQPPISLICSQ 155
+ S GSNC TL ++ + + +K + + + + + P C +
Sbjct: 1812 LKSEPGSNCDNSELPGTLHNSHKKRRNISDLNHPHKKQRKETDLTNKEKTKKPTQDSC-E 1870
Query: 156 RTAVSRKRNKKKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSA 200
T +K+ KKK PP T +P ++K P + ++ LSA
Sbjct: 1871 NTEAHQKKASKKKAPPVTKDPSSLKATPGIKDSSAALATSTSLSA 1915
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 33.1 bits (74), Expect = 0.55
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 103 VNSSAGSNCCTCNCQSTLQAILQELKTM-------RKLMQIQAVGTQNRQQPPISLICSQ 155
+ S GSNC TL ++ + + +K + + + + + P C +
Sbjct: 1812 LKSEPGSNCDNSELPGTLHNSHKKRRNISDLNHPHKKQRKETDLTNKEKTKKPTQDSC-E 1870
Query: 156 RTAVSRKRNKKKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSA 200
T +K+ KKK PP T +P ++K P + ++ LSA
Sbjct: 1871 NTEAHQKKASKKKAPPVTKDPSSLKATPGIKDSSAALATSTSLSA 1915
>gi|71773110 apolipoprotein A-IV precursor [Homo sapiens]
Length = 396
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 2 EIKKQITGMRRLLNDSTGRIYQRVGKEGEKLKEE-PQDLDLVWPPRLNSSAEAPQSLHPS 60
E+ +++ L +++R+ K+ EKLKEE ++L+ + L + E Q + +
Sbjct: 68 EVNTYAGDLQKKLVPFATELHERLAKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDN 127
Query: 61 SRGVWNELPPQSGQFSGQYGTRSRTFQSQPHP 92
R + L P + Q Q T++ + Q P
Sbjct: 128 LRELQQRLEPYADQLRTQVSTQAEQLRRQLTP 159
>gi|134152721 transmembrane protein 214 isoform 1 [Homo sapiens]
Length = 689
Score = 32.0 bits (71), Expect = 1.2
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 43/195 (22%)
Query: 162 KRNKKKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVL 221
KR K++VPP VEP +KP + KK T P +++ G L
Sbjct: 69 KRQNKEQVPPPAVEP----KKPGNKKQPKKVA-------------TPPNQNQKQGRFRSL 111
Query: 222 ESPSSDPEVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVC-------AFFDDKTLA 274
E + + DV + +LD S ++ + S+ + L A + TL+
Sbjct: 112 E--------EALKALDVADLQKELDKSQSVFSGNPSIWLKDLASYLNYKLQAPLSEPTLS 163
Query: 275 ---NSLPNGKRKRGLNDNRKGLDQNIVGAIKVFTEK--YCTANHVDKLPGP-----RDWV 324
+ P R L +GL G++++F + + +DK PG R +
Sbjct: 164 QHTHDYPYSLVSRELRGIIRGLLAKAAGSLELFFDHCLFTMLQELDKTPGESLHGYRICI 223
Query: 325 Q-ILQDQIKLARRRL 338
Q ILQD+ K+A L
Sbjct: 224 QAILQDKPKIATANL 238
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 32.0 bits (71), Expect = 1.2
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 306 EKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGSAEIADSDERLDGIALPPTGACGG 365
++Y ++ K+ RD+++ LQ + RR++RG A +A S + A PTG
Sbjct: 68 KQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127
Query: 366 PCTVLPGGSAAVTLVLQSSPQTMSQEKGQMAEPWEEQHLVLLNNLTRDRAETGALSQTSQ 425
VL + + ++LQ + S+ K + A+ + L+ L +R + + T +
Sbjct: 128 KIQVL---TDKIDVLLQQIEELGSEGKVEEAQGM----MKLVEQLKEERELLRSTTSTIE 180
Query: 426 DF 427
F
Sbjct: 181 SF 182
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 32.0 bits (71), Expect = 1.2
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 306 EKYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGSAEIADSDERLDGIALPPTGACGG 365
++Y ++ K+ RD+++ LQ + RR++RG A +A S + A PTG
Sbjct: 68 KQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127
Query: 366 PCTVLPGGSAAVTLVLQSSPQTMSQEKGQMAEPWEEQHLVLLNNLTRDRAETGALSQTSQ 425
VL + + ++LQ + S+ K + A+ + L+ L +R + + T +
Sbjct: 128 KIQVL---TDKIDVLLQQIEELGSEGKVEEAQGM----MKLVEQLKEERELLRSTTSTIE 180
Query: 426 DF 427
F
Sbjct: 181 SF 182
>gi|212276104 leucine rich repeat (in FLII) interacting protein 1
isoform 5 [Homo sapiens]
Length = 752
Score = 31.6 bits (70), Expect = 1.6
Identities = 46/205 (22%), Positives = 74/205 (36%), Gaps = 14/205 (6%)
Query: 52 EAPQSL-----HPSSRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGELPVVNSS 106
E PQ L H + N+ + + R + T E P+
Sbjct: 403 EVPQELETSTGHSLEKEFTNQEAAEPKEVPAHSTEVGRDHNEEEGEETGLRDEKPIKTEV 462
Query: 107 AGSNCCT-CNCQSTLQAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNK 165
GS T NCQ + T + + ++ + Q +L SQ+ ++K+
Sbjct: 463 PGSPAGTEGNCQEATGP--STVDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKN 520
Query: 166 KKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPS 225
KKK P VE L K E+ ++ SE+ + + T +S V V E+P
Sbjct: 521 KKKKSPVPVETL----KDVKKELTYQNTDLSEIKEEEQVKSTD-RKSAVEAQNEVTENPK 575
Query: 226 SDPEVQLAEGFDV-FMPKSQLDSIL 249
+ +E D PK +LD L
Sbjct: 576 QKIAAESSENVDCPENPKIKLDGKL 600
>gi|212276096 leucine rich repeat (in FLII) interacting protein 1
isoform 3 [Homo sapiens]
Length = 808
Score = 31.6 bits (70), Expect = 1.6
Identities = 46/205 (22%), Positives = 74/205 (36%), Gaps = 14/205 (6%)
Query: 52 EAPQSL-----HPSSRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGELPVVNSS 106
E PQ L H + N+ + + R + T E P+
Sbjct: 459 EVPQELETSTGHSLEKEFTNQEAAEPKEVPAHSTEVGRDHNEEEGEETGLRDEKPIKTEV 518
Query: 107 AGSNCCT-CNCQSTLQAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNK 165
GS T NCQ + T + + ++ + Q +L SQ+ ++K+
Sbjct: 519 PGSPAGTEGNCQEATGP--STVDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKN 576
Query: 166 KKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPS 225
KKK P VE L K E+ ++ SE+ + + T +S V V E+P
Sbjct: 577 KKKKSPVPVETL----KDVKKELTYQNTDLSEIKEEEQVKSTD-RKSAVEAQNEVTENPK 631
Query: 226 SDPEVQLAEGFDV-FMPKSQLDSIL 249
+ +E D PK +LD L
Sbjct: 632 QKIAAESSENVDCPENPKIKLDGKL 656
>gi|212276070 leucine rich repeat (in FLII) interacting protein 1
isoform 4 [Homo sapiens]
Length = 784
Score = 31.6 bits (70), Expect = 1.6
Identities = 46/205 (22%), Positives = 74/205 (36%), Gaps = 14/205 (6%)
Query: 52 EAPQSL-----HPSSRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGELPVVNSS 106
E PQ L H + N+ + + R + T E P+
Sbjct: 435 EVPQELETSTGHSLEKEFTNQEAAEPKEVPAHSTEVGRDHNEEEGEETGLRDEKPIKTEV 494
Query: 107 AGSNCCT-CNCQSTLQAILQELKTMRKLMQIQAVGTQNRQQPPISLICSQRTAVSRKRNK 165
GS T NCQ + T + + ++ + Q +L SQ+ ++K+
Sbjct: 495 PGSPAGTEGNCQEATGP--STVDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKN 552
Query: 166 KKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPS 225
KKK P VE L K E+ ++ SE+ + + T +S V V E+P
Sbjct: 553 KKKKSPVPVETL----KDVKKELTYQNTDLSEIKEEEQVKSTD-RKSAVEAQNEVTENPK 607
Query: 226 SDPEVQLAEGFDV-FMPKSQLDSIL 249
+ +E D PK +LD L
Sbjct: 608 QKIAAESSENVDCPENPKIKLDGKL 632
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 31.6 bits (70), Expect = 1.6
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 299 GAIKVFTEKYCTANHVDKLP---GPRDWVQILQDQIKLARRRLKRGSAE---IADSDERL 352
GA + +T+K A H D+LP P ++ L +I+L+ K E +A SDE
Sbjct: 404 GAFRSWTKKQALAEHEDELPEHFKPSQLIKDLAKEIRLSENASKAVRPEVNTVASSDEVC 463
Query: 353 DG---IALPPTGACGGPCTVLPGGSAAVTLVLQSSPQTMSQEK 392
DG PP+ P P S + + +P+T+ K
Sbjct: 464 DGDREKEEPPS-----PIEATPPQSLLEKVSKKKTPKTVKMPK 501
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|27363480 hypothetical protein LOC55262 [Homo sapiens]
Length = 580
Score = 30.8 bits (68), Expect = 2.8
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 170 PPKTVEPLTVKQKPSGSEMEKKSVVASELSAL---QAAEHTSPEESRVLGFGIVLESPSS 226
PP PL+ K PS + + +V ++L Q+ H P S ++ G V+E +
Sbjct: 483 PPPEARPLSRKSSPSSPAV--RDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAI 540
Query: 227 DPEVQLAEGFDVFMP 241
P V G +++P
Sbjct: 541 TPPVASPVGRPLYLP 555
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 76 SGQYGTRSRTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQELKTMRKLMQ 135
SG TRSR+ +TSS+G SS+GS+ + + +S + T R
Sbjct: 70 SGSSSTRSRS------SSTSSSGSSTSTGSSSGSSSSSASSRSGSSS------TSRSSSS 117
Query: 136 IQAVGTQNRQQPPISLICSQRTAVSRKRNKKKKVPPKTVEPLTVKQKPS 184
+ G+ + S+R +R+R++ K PPK E ++ PS
Sbjct: 118 SSSSGSPSP---------SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
>gi|114842396 ankyrin-repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 763
Score = 30.0 bits (66), Expect = 4.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 84 RTFQSQPHPTTSSNGELPVVNSSAGSNCCTCNCQSTLQAILQEL 127
R QSQ S G+LP SSA SN NC+ + +Q L
Sbjct: 36 RRKQSQCDLLNESTGQLPTTCSSAASNSINWNCRVKMTQQMQNL 79
>gi|34328899 protein tyrosine phosphatase, non-receptor type 14
[Homo sapiens]
Length = 1187
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 180 KQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLGFGIVLESPSSDPEVQLAEGFDVF 239
KQK +G E +K+ ++ + L+ L A + EE+RV + ++ + +L EG VF
Sbjct: 852 KQKMAGLEAQKRPLMLAALNGLSVARVSGREENRVDATRVPMDERFRTLKKKLEEGM-VF 910
Query: 240 -----MPKSQLDSILS 250
+PK + + I S
Sbjct: 911 TEYEQIPKKKANGIFS 926
>gi|38202222 fibronectin leucine rich transmembrane protein 3
precursor [Homo sapiens]
Length = 649
Score = 30.0 bits (66), Expect = 4.7
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 287 NDNRKGLDQNIVGAIKVFTEK-------YCTANHVDKLPGPRDWVQILQDQIKLARRRLK 339
N+N L Q I + T+ YC K+ RDW+Q L ++ +
Sbjct: 280 NNNLSNLPQGIFDDLDNITQLILRNNPWYCGC----KMKWVRDWLQSLPVKVNV------ 329
Query: 340 RGSAEIADSDERLDGIALPPTGACGGPCTVLPGGSAAVTLVLQSSPQTMSQEKGQMAEPW 399
RG + + E++ G+A+ A C G + + + P T+ +GQ P
Sbjct: 330 RGL--MCQAPEKVRGMAIKDLNAELFDCK--DSGIVSTIQITTAIPNTVYPAQGQWPAPV 385
Query: 400 EEQHLVLLNNLTRDRAETGALSQ 422
+Q + LT+D TG+ S+
Sbjct: 386 TKQPDIKNPKLTKDHQTTGSPSR 408
>gi|7019383 fibronectin leucine rich transmembrane protein 3
precursor [Homo sapiens]
Length = 649
Score = 30.0 bits (66), Expect = 4.7
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 287 NDNRKGLDQNIVGAIKVFTEK-------YCTANHVDKLPGPRDWVQILQDQIKLARRRLK 339
N+N L Q I + T+ YC K+ RDW+Q L ++ +
Sbjct: 280 NNNLSNLPQGIFDDLDNITQLILRNNPWYCGC----KMKWVRDWLQSLPVKVNV------ 329
Query: 340 RGSAEIADSDERLDGIALPPTGACGGPCTVLPGGSAAVTLVLQSSPQTMSQEKGQMAEPW 399
RG + + E++ G+A+ A C G + + + P T+ +GQ P
Sbjct: 330 RGL--MCQAPEKVRGMAIKDLNAELFDCK--DSGIVSTIQITTAIPNTVYPAQGQWPAPV 385
Query: 400 EEQHLVLLNNLTRDRAETGALSQ 422
+Q + LT+D TG+ S+
Sbjct: 386 TKQPDIKNPKLTKDHQTTGSPSR 408
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 29.6 bits (65), Expect = 6.1
Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 22/177 (12%)
Query: 44 PPRLNSSAEAPQSLHPSSRGVWNELPPQSGQFSGQYGTRSRTFQSQPHPTTSSNGELPVV 103
PP +++A P H + G+ PPQ +QP SS+G+ P
Sbjct: 819 PPPASTAAGMPSLQHTTPPGM---TPPQPAA------------PTQPSTPVSSSGQTPTP 863
Query: 104 NSSAGSNCCTCNCQSTLQAILQELKTMRKLMQIQ----AVGTQNRQQPPISLICSQRTAV 159
+ + T+QA Q T + +Q A ++QQP T +
Sbjct: 864 TPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHAQPPGTPL 923
Query: 160 SRKRNKKKKVPPKTVEPLTVKQKPSGSEMEKKSVVASELSALQAAEHTSPEESRVLG 216
S+ + + P +V + S+ V E+ AE T P+ G
Sbjct: 924 SQ---AAASIDNRVPTPSSVASAETNSQQPGPDVPVLEMKTETQAEDTEPDPGESKG 977
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,396,799
Number of Sequences: 37866
Number of extensions: 928839
Number of successful extensions: 2643
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2622
Number of HSP's gapped (non-prelim): 52
length of query: 468
length of database: 18,247,518
effective HSP length: 106
effective length of query: 362
effective length of database: 14,233,722
effective search space: 5152607364
effective search space used: 5152607364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.