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Search of human proteins with 150378552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|150378552 sushi domain containing 5 [Homo sapiens]
(629 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150378552 sushi domain containing 5 [Homo sapiens] 1286 0.0
gi|4502503 complement component 4 binding protein, alpha chain p... 42 0.002
gi|61743978 stabilin 1 precursor [Homo sapiens] 42 0.002
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu... 42 0.002
gi|187607300 versican isoform 2 [Homo sapiens] 41 0.003
gi|21361116 versican isoform 1 [Homo sapiens] 41 0.003
gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1 [... 40 0.006
gi|38372931 brevican isoform 2 [Homo sapiens] 37 0.055
gi|38372935 brevican isoform 1 [Homo sapiens] 37 0.055
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 37 0.055
gi|42476320 sushi domain containing 1 [Homo sapiens] 36 0.094
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 36 0.12
gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo sa... 36 0.12
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 36 0.12
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 35 0.21
gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens] 35 0.27
gi|156630992 OTU domain containing 4 protein isoform 3 [Homo sap... 35 0.27
gi|40807496 OTU domain containing 4 protein isoform 1 [Homo sapi... 35 0.27
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 34 0.36
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 34 0.36
gi|195947369 junction-mediating and regulatory protein [Homo sap... 34 0.36
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 34 0.36
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 34 0.47
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 34 0.47
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 34 0.47
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 34 0.47
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 34 0.47
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 34 0.47
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 34 0.47
gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens] 34 0.47
>gi|150378552 sushi domain containing 5 [Homo sapiens]
Length = 629
Score = 1286 bits (3327), Expect = 0.0
Identities = 629/629 (100%), Positives = 629/629 (100%)
Query: 1 MTAEGPSPPARWHRRLPGLWAAALLLLGLPRLSVRADGKFFVLESQNGSQGLQLEAARLS 60
MTAEGPSPPARWHRRLPGLWAAALLLLGLPRLSVRADGKFFVLESQNGSQGLQLEAARLS
Sbjct: 1 MTAEGPSPPARWHRRLPGLWAAALLLLGLPRLSVRADGKFFVLESQNGSQGLQLEAARLS 60
Query: 61 CKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTLGTTVCSKGSGEQQIMRAVDVRIES 120
CKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTLGTTVCSKGSGEQQIMRAVDVRIES
Sbjct: 61 CKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTLGTTVCSKGSGEQQIMRAVDVRIES 120
Query: 121 NPVPGGTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAF 180
NPVPGGTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAF
Sbjct: 121 NPVPGGTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAF 180
Query: 181 TLLCNSCGEWYGLVQACGKDEAEAHIDYEDNFPDDRSVSFRELMEDSRTEADEDRGQGDS 240
TLLCNSCGEWYGLVQACGKDEAEAHIDYEDNFPDDRSVSFRELMEDSRTEADEDRGQGDS
Sbjct: 181 TLLCNSCGEWYGLVQACGKDEAEAHIDYEDNFPDDRSVSFRELMEDSRTEADEDRGQGDS 240
Query: 241 SEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQKHLFWFPAEA 300
SEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQKHLFWFPAEA
Sbjct: 241 SEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQKHLFWFPAEA 300
Query: 301 FHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDSKAGD 360
FHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDSKAGD
Sbjct: 301 FHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDSKAGD 360
Query: 361 PVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVLVTPDQPILVEVKKP 420
PVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVLVTPDQPILVEVKKP
Sbjct: 361 PVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVLVTPDQPILVEVKKP 420
Query: 421 KSSTLTPSEGMTHSSVLPSQMLDVEALALRPVNASETEGIGDGDLTKYQSTLPWRFITEE 480
KSSTLTPSEGMTHSSVLPSQMLDVEALALRPVNASETEGIGDGDLTKYQSTLPWRFITEE
Sbjct: 421 KSSTLTPSEGMTHSSVLPSQMLDVEALALRPVNASETEGIGDGDLTKYQSTLPWRFITEE 480
Query: 481 SPMATLSYELTSSTLEILTVNTVKQTPNHIPSTIMATTQPPVETTVPEIQDSFPYLLSED 540
SPMATLSYELTSSTLEILTVNTVKQTPNHIPSTIMATTQPPVETTVPEIQDSFPYLLSED
Sbjct: 481 SPMATLSYELTSSTLEILTVNTVKQTPNHIPSTIMATTQPPVETTVPEIQDSFPYLLSED 540
Query: 541 FFGQEGPGPGASEELHPTLESCVGDGCPGLSRGPVIATIVTVLCLLLLLAGVGMVWGYRK 600
FFGQEGPGPGASEELHPTLESCVGDGCPGLSRGPVIATIVTVLCLLLLLAGVGMVWGYRK
Sbjct: 541 FFGQEGPGPGASEELHPTLESCVGDGCPGLSRGPVIATIVTVLCLLLLLAGVGMVWGYRK 600
Query: 601 CQHKSSVYKLNVGQRQARHYHQQIEMEKV 629
CQHKSSVYKLNVGQRQARHYHQQIEMEKV
Sbjct: 601 CQHKSSVYKLNVGQRQARHYHQQIEMEKV 629
>gi|4502503 complement component 4 binding protein, alpha chain
precursor [Homo sapiens]
Length = 597
Score = 42.0 bits (97), Expect = 0.002
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 140 CGDPPSF----PHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCNSCGEW 190
CG PP+ P I T + G L Y C PG++ H + TL CNS GEW
Sbjct: 50 CGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSH--STQTLTCNSDGEW 102
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 42.0 bits (97), Expect = 0.002
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 41 FVLESQNGSQGLQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWLADGT 95
F L++ +G GL A +C+++GA LAS +L Q F +C GWLA+G+
Sbjct: 2210 FHLQATSGPYGLNFSEAEAACEAQGAVLASFPQL-SAAQQLGFHLCLMGWLANGS 2263
>gi|26051243 tumor necrosis factor, alpha-induced protein 6
precursor [Homo sapiens]
Length = 277
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 44 ESQNGSQGLQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTLGTTVCSK 103
E+++G L A+ C+ G HLA+ +L + F VC GW+A G +G +
Sbjct: 41 EARSGKYKLTYAEAKAVCEFEGGHLATYKQLE-AARKIGFHVCAAGWMAKGRVGYPIVKP 99
Query: 104 GS----GEQQIMRAVDVRIESNPVPGGTYSALCIKDEEKPCG----DP------PSFPH 148
G G+ I +D I N + A C K CG DP P FP+
Sbjct: 100 GPNCGFGKTGI---IDYGIRLN--RSERWDAYCYNPHAKECGGVFTDPKQIFKSPGFPN 153
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 32 LSVRADGKFFVLESQNGSQGLQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWL 91
+S+ DG F + L EAA+ +C GA +A+ ++L +D F C GWL
Sbjct: 143 VSLTVDGVVFHYRAATSRYTLNFEAAQKACLDVGAVIATPEQLFAAYED-GFEQCDAGWL 201
Query: 92 ADGTLGTTVCSKGSG-EQQIMRAVDVRIESNPVPGGTYSALCIKD 135
AD T+ + + G M VR P TY C D
Sbjct: 202 ADQTVRYPIRAPRVGCYGDKMGKAGVRTYGFRSPQETYDVYCYVD 246
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 32 LSVRADGKFFVLESQNGSQGLQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWL 91
+S+ DG F + L EAA+ +C GA +A+ ++L +D F C GWL
Sbjct: 143 VSLTVDGVVFHYRAATSRYTLNFEAAQKACLDVGAVIATPEQLFAAYED-GFEQCDAGWL 201
Query: 92 ADGTLGTTVCSKGSG-EQQIMRAVDVRIESNPVPGGTYSALCIKD 135
AD T+ + + G M VR P TY C D
Sbjct: 202 ADQTVRYPIRAPRVGCYGDKMGKAGVRTYGFRSPQETYDVYCYVD 246
Score = 30.4 bits (67), Expect = 5.1
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Query: 388 EEEDGDRGDGSVGLDENVLVTPDQPILVEVKKPKSSTL-TPSEGM----THSSVLPSQML 442
EE+D DR +VG DE+ L+ P ++ V K T+ T E + ++V P M
Sbjct: 554 EEDDEDR-TLTVGSDESTLIFDQIPEVITVSKTSEDTIHTHLEDLESVSASTTVSPLIMP 612
Query: 443 DVEALALRPVNASETEG-IGDGDLTKYQSTLPWRFITEESPMATLSYELTSSTLEILTVN 501
D ++ +T G I + L KY ST P+ EL + + + V
Sbjct: 613 DNNGSSMDDWEERQTSGRITEEFLGKYLSTTPF------PSQHRTEIELFPYSGDKILVE 666
Query: 502 TVKQTPNHIPSTIMATTQPPVETTVPEIQ-DSFPYLLSEDFFGQEGPGPGASEE 554
+ T M + ET +PE++ D++ + E+ + P G +EE
Sbjct: 667 GISTVIYPSLQTEMTHRRERTETLIPEMRTDTYTDEIQEEI--TKSPFMGKTEE 718
>gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
[Homo sapiens]
Length = 322
Score = 40.0 bits (92), Expect = 0.006
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 16 LPGLWAAALLLLGLPR---LSVRADGKFF--VLESQNGSQGLQLEAARLSCKSRGAHLAS 70
L +W LL+ G R LS++ + L S+ +Q L A+ +C+ G LA
Sbjct: 11 LTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAG 70
Query: 71 ADELRRVVQDCSFAVCTTGWLADG 94
D++ ++ SF C+ GW+ DG
Sbjct: 71 KDQVETALK-ASFETCSYGWVGDG 93
>gi|38372931 brevican isoform 2 [Homo sapiens]
Length = 671
Score = 37.0 bits (84), Expect = 0.055
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 52 LQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTL 96
L LE AR C+ RGA +A+ +L D C+ GWLADG++
Sbjct: 268 LTLEEARAYCQERGAEIATTGQLY-AAWDGGLDHCSPGWLADGSV 311
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 37.0 bits (84), Expect = 0.055
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 52 LQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTL 96
L LE AR C+ RGA +A+ +L D C+ GWLADG++
Sbjct: 268 LTLEEARAYCQERGAEIATTGQLY-AAWDGGLDHCSPGWLADGSV 311
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 37.0 bits (84), Expect = 0.055
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 376 VTEGAWRKTEAEEEEDGDRGDGSVGLDENVLVTPDQPILVEVKKPKSSTLTPSEGMTHSS 435
V+E +WR+ A R G D VL TP+ P + P++S P++ + +
Sbjct: 210 VSESSWRERPAPGNAGPRRPPGDPSTDPEVLPTPEGPESETSRGPRAS---PTKALLSTP 266
Query: 436 VLPSQMLDVEALALRPVNASETEGIGDGDL---TKYQSTLPWRFITEESPMATLSYELT 491
V + E LA ++A T G D D ++ + + + +SP ATL LT
Sbjct: 267 VRNGESHSREGLAGLVLDAERTLGELDRDALRRSRLRKVQTFPRLLSDSPEATLCLPLT 325
>gi|42476320 sushi domain containing 1 [Homo sapiens]
Length = 747
Score = 36.2 bits (82), Expect = 0.094
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCN 185
GT+ + + +E CG+PP H IL G +G YVC G T +C
Sbjct: 225 GTWESPKLHCQEINCGNPPEMRHAILVGNHSSRLGGVARYVCQEG--FESPGGKITSVCT 282
Query: 186 SCGEWYGLVQAC 197
G W C
Sbjct: 283 EKGTWRESTLTC 294
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 97 GTTVCSKGSGEQQIMRAVDVRIESNPVPGGTYSALCIKDEEKPCGDPPSFPHTILQGRTG 156
G V + GS E M R P T + C E CG PP P + G
Sbjct: 139 GRCVNTHGSFECYCMDGYLPRNGPEPFHPTTDATSCT---EIDCGTPPEVPDGYIIGNYT 195
Query: 157 LEMGDELLYVCAPGHIMGHRETAFTLLCNSCGEW 190
+G ++ Y C G +T + C G W
Sbjct: 196 SSLGSQVRYACREGFFSVPEDTVSS--CTGLGTW 227
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sapiens]
Length = 3667
Score = 35.8 bits (81), Expect = 0.12
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAF--TLL 183
GT+S + C PP + L+G T + G + Y+C+PG+ E +F L
Sbjct: 3179 GTWSGVMPTCRAVTCPTPPQISNGRLEG-TNFDWGFSISYICSPGY-----ELSFPAVLT 3232
Query: 184 CNSCGEWYGLVQAC 197
C G W G V C
Sbjct: 3233 CVGNGTWSGEVPQC 3246
Score = 33.5 bits (75), Expect = 0.61
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 136 EEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIM-GHRETAFTLLCNS--CGEWYG 192
+ CG+P P +L G T ++GD++ Y C G+I+ GH + T + NS W
Sbjct: 134 QSSSCGNPGVPPKGVLYG-TRFDVGDKIRYSCVTGYILDGHPQ--LTCIANSVNTASWDF 190
Query: 193 LVQACGKDEA 202
V C ++A
Sbjct: 191 PVPICRAEDA 200
Score = 30.4 bits (67), Expect = 5.1
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCN 185
GT+S CGDP P L+ +G + Y+C PG+ M + C
Sbjct: 3119 GTWSGTLPNCTIISCGDP-GIPANGLRYGDDYVVGQNVSYMCQPGYTMELNGSRIR-TCT 3176
Query: 186 SCGEWYGLVQAC 197
G W G++ C
Sbjct: 3177 INGTWSGVMPTC 3188
Score = 29.6 bits (65), Expect = 8.8
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 23/119 (19%)
Query: 109 QIMRAVDVRIESNPVPGGTYSALCIKDEEKPCGDPPSFPHTILQGRT-------GLEM-- 159
Q+ V + + G+ + C+ D P PH+ Q T G+++
Sbjct: 3330 QVGSVVQFHCKKGHLLQGSTTRTCLPDLTWSGIQPECIPHSCKQPETPAHANVVGMDLPS 3389
Query: 160 -GDELLYVCAPGHIMG----HRETAFTLLCNSCGEWYGLVQACGKDEAEAHIDYEDNFP 213
G L+Y C PG + HR +C S W G V C EA + I +D P
Sbjct: 3390 HGYTLIYTCQPGFFLAGGTEHR------VCRSDNTWTGKVPIC---EAGSKILVKDPRP 3439
>gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo
sapiens]
Length = 3538
Score = 35.8 bits (81), Expect = 0.12
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAF--TLL 183
GT+S + C PP + L+G T + G + Y+C+PG+ E +F L
Sbjct: 3050 GTWSGVMPTCRAVTCPTPPQISNGRLEG-TNFDWGFSISYICSPGY-----ELSFPAVLT 3103
Query: 184 CNSCGEWYGLVQAC 197
C G W G V C
Sbjct: 3104 CVGNGTWSGEVPQC 3117
Score = 33.5 bits (75), Expect = 0.61
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 136 EEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIM-GHRETAFTLLCNS--CGEWYG 192
+ CG+P P +L G T ++GD++ Y C G+I+ GH + T + NS W
Sbjct: 174 QSSSCGNPGVPPKGVLYG-TRFDVGDKIRYSCVTGYILDGHPQ--LTCIANSVNTASWDF 230
Query: 193 LVQACGKDEA 202
V C ++A
Sbjct: 231 PVPICRAEDA 240
Score = 30.4 bits (67), Expect = 5.1
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCN 185
GT+S CGDP P L+ +G + Y+C PG+ M + C
Sbjct: 2990 GTWSGTLPNCTIISCGDP-GIPANGLRYGDDYVVGQNVSYMCQPGYTMELNGSRIR-TCT 3047
Query: 186 SCGEWYGLVQAC 197
G W G++ C
Sbjct: 3048 INGTWSGVMPTC 3059
Score = 29.6 bits (65), Expect = 8.8
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 23/119 (19%)
Query: 109 QIMRAVDVRIESNPVPGGTYSALCIKDEEKPCGDPPSFPHTILQGRT-------GLEM-- 159
Q+ V + + G+ + C+ D P PH+ Q T G+++
Sbjct: 3201 QVGSVVQFHCKKGHLLQGSTTRTCLPDLTWSGIQPECIPHSCKQPETPAHANVVGMDLPS 3260
Query: 160 -GDELLYVCAPGHIMG----HRETAFTLLCNSCGEWYGLVQACGKDEAEAHIDYEDNFP 213
G L+Y C PG + HR +C S W G V C EA + I +D P
Sbjct: 3261 HGYTLIYTCQPGFFLAGGTEHR------VCRSDNTWTGKVPIC---EAGSKILVKDPRP 3310
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sapiens]
Length = 3707
Score = 35.8 bits (81), Expect = 0.12
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAF--TLL 183
GT+S + C PP + L+G T + G + Y+C+PG+ E +F L
Sbjct: 3219 GTWSGVMPTCRAVTCPTPPQISNGRLEG-TNFDWGFSISYICSPGY-----ELSFPAVLT 3272
Query: 184 CNSCGEWYGLVQAC 197
C G W G V C
Sbjct: 3273 CVGNGTWSGEVPQC 3286
Score = 33.5 bits (75), Expect = 0.61
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 136 EEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIM-GHRETAFTLLCNS--CGEWYG 192
+ CG+P P +L G T ++GD++ Y C G+I+ GH + T + NS W
Sbjct: 174 QSSSCGNPGVPPKGVLYG-TRFDVGDKIRYSCVTGYILDGHPQ--LTCIANSVNTASWDF 230
Query: 193 LVQACGKDEA 202
V C ++A
Sbjct: 231 PVPICRAEDA 240
Score = 30.4 bits (67), Expect = 5.1
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCN 185
GT+S CGDP P L+ +G + Y+C PG+ M + C
Sbjct: 3159 GTWSGTLPNCTIISCGDP-GIPANGLRYGDDYVVGQNVSYMCQPGYTMELNGSRIR-TCT 3216
Query: 186 SCGEWYGLVQAC 197
G W G++ C
Sbjct: 3217 INGTWSGVMPTC 3228
Score = 29.6 bits (65), Expect = 8.8
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 23/119 (19%)
Query: 109 QIMRAVDVRIESNPVPGGTYSALCIKDEEKPCGDPPSFPHTILQGRT-------GLEM-- 159
Q+ V + + G+ + C+ D P PH+ Q T G+++
Sbjct: 3370 QVGSVVQFHCKKGHLLQGSTTRTCLPDLTWSGIQPECIPHSCKQPETPAHANVVGMDLPS 3429
Query: 160 -GDELLYVCAPGHIMG----HRETAFTLLCNSCGEWYGLVQACGKDEAEAHIDYEDNFP 213
G L+Y C PG + HR +C S W G V C EA + I +D P
Sbjct: 3430 HGYTLIYTCQPGFFLAGGTEHR------VCRSDNTWTGKVPIC---EAGSKILVKDPRP 3479
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 35.0 bits (79), Expect = 0.21
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 126 GTYSAL---CIKDEEKPCGDPPSFPHTILQGRT-GLEMGDELLYVCAPGHIMGHRETAFT 181
GT+S + CI C DP + PH +Q + G E+G + + C G+ H + + T
Sbjct: 3200 GTWSGIQPTCIDPAHNTCPDPGT-PHFGIQNSSRGYEVGSTVFFRCRKGY---HIQGSTT 3255
Query: 182 LLCNSCGEWYG-----LVQACGKDEAEAHID 207
C + W G + AC + E AH D
Sbjct: 3256 RTCLANLTWSGIQTECIPHACRQPETPAHAD 3286
Score = 31.2 bits (69), Expect = 3.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 140 CGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIM-GH 175
CG+P +L G T +GD++ Y C PG+I+ GH
Sbjct: 145 CGNPGEILKGVLHG-TRFNIGDKIRYSCLPGYILEGH 180
Score = 30.0 bits (66), Expect = 6.7
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCN 185
G++S L E CG+P + + ++ G+ ++Y C G+ T C
Sbjct: 2965 GSWSGLQPVCEAVSCGNPGTPTNGMIVSSDGILFSSSVIYACWEGY---KTSGLMTRHCT 3021
Query: 186 SCGEWYG-----LVQACGKDEAEAH-IDYEDNFPDDRSVSFR 221
+ G W G + +CG A+ I + +F +++VS++
Sbjct: 3022 ANGTWTGTAPDCTIISCGDPGTLANGIQFGTDFTFNKTVSYQ 3063
>gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens]
Length = 1036
Score = 34.7 bits (78), Expect = 0.27
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 33/116 (28%)
Query: 126 GTYSALCIKDEEKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCN 185
GT + +C+ +E C +P + P +I+QG G Y CA +
Sbjct: 31 GTRALVCLPCDESKCEEPRNCPGSIVQGVCG------CCYTCA------------SQRNE 72
Query: 186 SCGEWYGLVQACGK---------------DEAEAHIDYEDNFPDDRSVSFRELMED 226
SCG +G+ C + E EA + ++N+ DD+ + F+ E+
Sbjct: 73 SCGGTFGIYGTCDRGLRCVIRPPLNGDSLTEYEAGVCEDENWTDDQLLGFKPCNEN 128
>gi|156630992 OTU domain containing 4 protein isoform 3 [Homo
sapiens]
Length = 1049
Score = 34.7 bits (78), Expect = 0.27
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 44/270 (16%)
Query: 291 KHLFWFPAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGE-------PETKVIYG-- 341
K+L P++ KP E+ D D + S N+ G L P E E++++Y
Sbjct: 344 KNLSRTPSQIIRKPDRERVEDFDHTSRES---NYFG--LSPEERREKQAIEESRLLYEIQ 398
Query: 342 NTDGPSGPF-----VGKNDSKAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGD 396
N D + P V ++ S++ +P V D +G+ R+ + EE +D D
Sbjct: 399 NRDEQAFPALSSSSVNQSASQSSNPCVQRKSSHVGD----RKGSRRRMDTEERKDKDSIH 454
Query: 397 GSVGLDENVLVTPDQPILVEVKKPKSSTLT-PSEGMTHSSVLPSQMLDVEALALRPVNAS 455
G LD+ P+ L + K +T++ PS+ P++ E ++L N +
Sbjct: 455 GHSQLDKR----PEPSTLENITDDKYATVSSPSKSKKLECPSPAEQKPAEHVSLS--NPA 508
Query: 456 ETEGIGDGDLTKYQSTLPWRFITEES------------PMATLSYELTSSTLEILTVNTV 503
+ LT +LP S P+ LS T +T V+
Sbjct: 509 PLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPTGVPAPIPVLSVTQTLTTGPDSAVSQA 568
Query: 504 KQTPNHIPSTIMATTQP--PVETTVPEIQD 531
TP+ +P +I A QP P+ T+ QD
Sbjct: 569 HLTPSPVPVSIQAVNQPLMPLPQTLSLYQD 598
>gi|40807496 OTU domain containing 4 protein isoform 1 [Homo
sapiens]
Length = 1048
Score = 34.7 bits (78), Expect = 0.27
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 44/270 (16%)
Query: 291 KHLFWFPAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGE-------PETKVIYG-- 341
K+L P++ KP E+ D D + S N+ G L P E E++++Y
Sbjct: 343 KNLSRTPSQIIRKPDRERVEDFDHTSRES---NYFG--LSPEERREKQAIEESRLLYEIQ 397
Query: 342 NTDGPSGPF-----VGKNDSKAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGD 396
N D + P V ++ S++ +P V D +G+ R+ + EE +D D
Sbjct: 398 NRDEQAFPALSSSSVNQSASQSSNPCVQRKSSHVGD----RKGSRRRMDTEERKDKDSIH 453
Query: 397 GSVGLDENVLVTPDQPILVEVKKPKSSTLT-PSEGMTHSSVLPSQMLDVEALALRPVNAS 455
G LD+ P+ L + K +T++ PS+ P++ E ++L N +
Sbjct: 454 GHSQLDKR----PEPSTLENITDDKYATVSSPSKSKKLECPSPAEQKPAEHVSLS--NPA 507
Query: 456 ETEGIGDGDLTKYQSTLPWRFITEES------------PMATLSYELTSSTLEILTVNTV 503
+ LT +LP S P+ LS T +T V+
Sbjct: 508 PLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPTGVPAPIPVLSVTQTLTTGPDSAVSQA 567
Query: 504 KQTPNHIPSTIMATTQP--PVETTVPEIQD 531
TP+ +P +I A QP P+ T+ QD
Sbjct: 568 HLTPSPVPVSIQAVNQPLMPLPQTLSLYQD 597
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 34.3 bits (77), Expect = 0.36
Identities = 58/241 (24%), Positives = 88/241 (36%), Gaps = 37/241 (15%)
Query: 325 SGVKLVPGEPETKVIYGNTDGPSGPFVGKNDSKAG----DPVVSSSDESWLDGYP---VT 377
+G PG P T ++G+T P P+ + + P S S G P +T
Sbjct: 964 AGTTRSPGSPPTLRVHGDTGSPRKPWPERRPPRPAATRTAPPTPSPGPSASPGPPGPALT 1023
Query: 378 EGAWRK----TEAEEEEDGDRGDGSVGLDENVLVTPDQPILVE----VKKPKSS---TLT 426
+ R+ + E D D S + T IL + P SS LT
Sbjct: 1024 SDSSRELTPHSALTSEATSDAPDTSPPTPDPASRTNPDLILTSPDFALSTPDSSVVPALT 1083
Query: 427 PSEGMTHSSVLPSQML-------DVEALALRPVNASETEGIGDGDLTKYQSTLPWRFITE 479
P T LP ++ +V +L+ E++ D D T Y ST+ +
Sbjct: 1084 PEPSPTPLPTLPKELTSDPSTPSEVTSLSPTSEQVPESDTTPDLDTTPYSSTVSEYSRSP 1143
Query: 480 E---SPMATLSYELTSSTLEILTVN---------TVKQTPNHIPSTIMATTQPPVETTVP 527
+ SP T + + T + I T+N T T P+TI +T P TT P
Sbjct: 1144 DPSPSPHPTTTPDPTMAPDPITTLNPTVTPHFPTTPHPTTTPHPTTITHSTMIPDPTTTP 1203
Query: 528 E 528
+
Sbjct: 1204 Q 1204
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 34.3 bits (77), Expect = 0.36
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 105 SGEQQIMRAVDVRIESNPVPGGTYSALCIKDEEKPCGDPPSFPH--TILQGRTGLEMGDE 162
+GE ++ + E N VP + K CG+PP H T Q + E+
Sbjct: 2298 AGEDCVVMIWHEKGEWNDVPCNYHLPFTCKKGTVACGEPPVVEHARTFGQKKDRYEINSL 2357
Query: 163 LLYVCAPGHIMGHRETAFTLLCNSCGEW 190
+ Y C G + H T+ C G W
Sbjct: 2358 VRYQCTEGFVQRHMP---TIRCQPSGHW 2382
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 32 LSVRADGKFFVLESQNGSQGLQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWL 91
L V G F + + L + A+ +C A +A+ ++L+ +D F C GWL
Sbjct: 146 LEVVVKGIVFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQAAYED-GFHQCDAGWL 204
Query: 92 ADGTL 96
AD T+
Sbjct: 205 ADQTV 209
Score = 31.6 bits (70), Expect = 2.3
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 55 EAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTLGTTVC-SKGSGEQQIMRA 113
EAA C+ GA LA+ +L Q +C+ GWLAD ++ + ++ + ++
Sbjct: 268 EAAN-ECRRLGARLATTGQLYLAWQ-AGMDMCSAGWLADRSVRYPISKARPNCGGNLLGV 325
Query: 114 VDVRIESN----PVPGGTYSALCIKDEE 137
V + +N P P Y A+C E+
Sbjct: 326 RTVYVHANQTGYPDPSSRYDAICYTGED 353
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 34.3 bits (77), Expect = 0.36
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 462 DGDLTKYQST-LPWRFITEESPMATLSYELTSSTLEILTVNTVKQTPNHIPSTIMATTQP 520
D LT+ ++T LP +T E P T+S L ++ LE +V T+ P+ +P T P
Sbjct: 760 DTSLTQLEATSLPLSGVTSELP-PTISLPLLNNNLEPCSV-TINPLPSPLPPTPPPPPPP 817
Query: 521 PVETTVPEI---QDSFPYLLSEDFFGQEG 546
P P + +DS P L +D +EG
Sbjct: 818 PPPPPPPPLPVAKDSGPETLEKDLPRKEG 846
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 34.3 bits (77), Expect = 0.36
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 52 LQLEAARLSCKSRGAHLASADELRRVVQDCSFAVCTTGWLADGTL 96
L L AR C+ +GA LAS +L + C GWLADG++
Sbjct: 271 LTLAGARAQCRRQGAALASVGQLHLAWHE-GLDQCDPGWLADGSV 314
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 33.9 bits (76), Expect = 0.47
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 238 GDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQK-HLFWF 296
G S P ++ S G + + P+ G P AG +P PG H
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 297 PAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDS 356
P E+ H+ G+ DD Q SG G P + + + PS P G +
Sbjct: 75 PMESMHEKGMS---DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS-PLGGSEHA 130
Query: 357 KAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVL 406
+ P S + P G A+ + G + G ++N L
Sbjct: 131 SSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPTPFNQNQL 177
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 33.9 bits (76), Expect = 0.47
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 238 GDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQK-HLFWF 296
G S P ++ S G + + P+ G P AG +P PG H
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 297 PAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDS 356
P E+ H+ G+ DD Q SG G P + + + PS P G +
Sbjct: 75 PMESMHEKGMS---DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS-PLGGSEHA 130
Query: 357 KAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVL 406
+ P S + P G A+ + G + G ++N L
Sbjct: 131 SSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPTPFNQNQL 177
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 33.9 bits (76), Expect = 0.47
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 238 GDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQK-HLFWF 296
G S P ++ S G + + P+ G P AG +P PG H
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 297 PAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDS 356
P E+ H+ G+ DD Q SG G P + + + PS P G +
Sbjct: 75 PMESMHEKGMS---DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS-PLGGSEHA 130
Query: 357 KAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVL 406
+ P S + P G A+ + G + G ++N L
Sbjct: 131 SSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPTPFNQNQL 177
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 33.9 bits (76), Expect = 0.47
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 238 GDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQK-HLFWF 296
G S P ++ S G + + P+ G P AG +P PG H
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 297 PAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDS 356
P E+ H+ G+ DD Q SG G P + + + PS P G +
Sbjct: 75 PMESMHEKGMS---DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS-PLGGSEHA 130
Query: 357 KAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVL 406
+ P S + P G A+ + G + G ++N L
Sbjct: 131 SSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPTPFNQNQL 177
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 33.9 bits (76), Expect = 0.47
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 238 GDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQK-HLFWF 296
G S P ++ S G + + P+ G P AG +P PG H
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 297 PAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDS 356
P E+ H+ G+ DD Q SG G P + + + PS P G +
Sbjct: 75 PMESMHEKGMS---DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS-PLGGSEHA 130
Query: 357 KAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVL 406
+ P S + P G A+ + G + G ++N L
Sbjct: 131 SSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPTPFNQNQL 177
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.9 bits (76), Expect = 0.47
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 238 GDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQK-HLFWF 296
G S P ++ S G + + P+ G P AG +P PG H
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 297 PAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDS 356
P E+ H+ G+ DD Q SG G P + + + PS P G +
Sbjct: 75 PMESMHEKGMS---DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS-PLGGSEHA 130
Query: 357 KAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVL 406
+ P S + P G A+ + G + G ++N L
Sbjct: 131 SSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPTPFNQNQL 177
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.9 bits (76), Expect = 0.47
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 238 GDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVPADSPGSRLLQK-HLFWF 296
G S P ++ S G + + P+ G P AG +P PG H
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 297 PAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPFVGKNDS 356
P E+ H+ G+ DD Q SG G P + + + PS P G +
Sbjct: 75 PMESMHEKGMS---DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS-PLGGSEHA 130
Query: 357 KAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVL 406
+ P S + P G A+ + G + G ++N L
Sbjct: 131 SSPVPASGPSSGPQMSSGP---GGAPLDGADPQALGQQNRGPTPFNQNQL 177
>gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]
Length = 364
Score = 33.9 bits (76), Expect = 0.47
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 470 STLPWRFITEESPMATLSYELTSSTLEILTVNTVKQTPNHIPSTIMATTQPPVETTVPEI 529
+T+P + + T+S T++ L +TV+T P ++I TT PV TTV
Sbjct: 154 TTVPMTTVPTTTVPTTMSIPTTTTVLTTMTVSTTTSVPT--TTSIPTTTSVPVTTTVSTF 211
Query: 530 QDSFPYLLSEDFFGQEGPGPGASEELHPT 558
P P E HPT
Sbjct: 212 VPPMPLPRQNHEPVATSPSSPQPAETHPT 240
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,718,972
Number of Sequences: 37866
Number of extensions: 1512274
Number of successful extensions: 3937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 3817
Number of HSP's gapped (non-prelim): 197
length of query: 629
length of database: 18,247,518
effective HSP length: 108
effective length of query: 521
effective length of database: 14,157,990
effective search space: 7376312790
effective search space used: 7376312790
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.