Guide to the Human Genome
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Name: USP7 Sequence: fasta or formatted (1102aa) NCBI GI: 150378533
Description:

ubiquitin specific peptidase 7

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         45           2
 C cysteine            1.7         19           1
 D aspartate           8.3         91           3
 E glutamate           8.0         88           3
 F phenylalanine       5.4         60           2
 G glycine             4.8         53           2
 H histidine           3.3         36           1
 I isoleucine          4.5         50           2
 K lysine              7.3         80           2
 L leucine             8.7         96           2
 M methionine          3.1         34           2
 N asparagine          4.4         49           1
 P proline             4.8         53           2
 Q glutamine           5.9         65           7
 R arginine            5.0         55           2
 S serine              5.3         58           2
 T threonine           4.4         49           1
 V valine              6.3         69           2
 W tryptophan          1.1         12           1
 Y tyrosine            3.6         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific peptidase 7 
USP47                 0.071   ubiquitin specific protease 47 
USP40                 0.062   ubiquitin thioesterase 40 
USP48                 0.056   ubiquitin specific protease 48 isoform a 
USP48                 0.055   ubiquitin specific protease 48 isoform b 
USP9X                 0.044   ubiquitin specific protease 9, X-linked isoform 4 [...
USP9X                 0.044   ubiquitin specific protease 9, X-linked isoform 3 [...
USP34                 0.044   ubiquitin specific protease 34 
USP24                 0.042   ubiquitin specific protease 24 
USP9Y                 0.041   ubiquitin specific protease 9, Y-linked 
USP12                 0.038   ubiquitin thiolesterase 12 
USP46                 0.037   ubiquitin specific peptidase 46 isoform 2 
USP46                 0.037   ubiquitin specific peptidase 46 isoform 1 
LOC100288520          0.031   PREDICTED: hypothetical protein XP_002342486 
LOC100287478          0.031   PREDICTED: hypothetical protein XP_002342479 
LOC100287404          0.031   PREDICTED: hypothetical protein XP_002342477 
LOC100287205          0.031   PREDICTED: hypothetical protein XP_002342473 
LOC100287178          0.031   PREDICTED: hypothetical protein XP_002342472 
LOC100287364          0.030   PREDICTED: hypothetical protein XP_002342476 
USP42                 0.030   ubiquitin specific peptidase 42 
USP18                 0.030   ubiquitin specific protease 18 
LOC100287327          0.030   PREDICTED: hypothetical protein XP_002342475 
LOC100287238          0.030   PREDICTED: hypothetical protein XP_002342474 
LOC728373             0.029   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC728419             0.029   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.029   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.029   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.029   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728379             0.029   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728373             0.029   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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