Search of human proteins with 11024700

Search of human proteins with 11024700

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11024700 translocase of inner mitochondrial membrane 13
[Homo sapiens]
         (95 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11024700 translocase of inner mitochondrial membrane 13 [Homo...   197   1e-51
gi|4758152 translocase of inner mitochondrial membrane 8 homolog...    52   1e-07
gi|6912712 translocase of inner mitochondrial membrane 8 homolog...    44   3e-05
gi|239752419 PREDICTED: similar to translocase of inner mitochon...    42   1e-04
gi|239746934 PREDICTED: similar to translocase of inner mitochon...    42   1e-04
gi|239757907 PREDICTED: similar to translocase of inner mitochon...    40   4e-04
gi|6912708 translocase of inner mitochondrial membrane 10 homolo...    36   0.006
gi|4507565 tumor necrosis factor receptor superfamily, member 11...    30   0.54 
gi|109255249 keratin 4 [Homo sapiens]                                  30   0.54 
gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]      29   0.71 
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H...    26   7.8  
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H...    26   7.8  
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H...    26   7.8  
gi|109255251 loricrin [Homo sapiens]                                   26   7.8  

>gi|11024700 translocase of inner mitochondrial membrane 13 [Homo
          sapiens]
          Length = 95

 Score =  197 bits (502), Expect = 1e-51
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MEGGFGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDN 60
          MEGGFGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDN
Sbjct: 1  MEGGFGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDN 60

Query: 61 SEQKCIAMCMDRYMDAWNTVSRAYNSRLQRERANM 95
          SEQKCIAMCMDRYMDAWNTVSRAYNSRLQRERANM
Sbjct: 61 SEQKCIAMCMDRYMDAWNTVSRAYNSRLQRERANM 95


>gi|4758152 translocase of inner mitochondrial membrane 8 homolog
          A isoform 1 [Homo sapiens]
          Length = 97

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 7  SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66
          S    +G G +DP L    ++V+      Q+L+ +MT+ C+ KC+ KPG  LD+  + C 
Sbjct: 5  SSSSAAGLGAVDPQL-QHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACF 63

Query: 67 AMCMDRYMD 75
            C++R++D
Sbjct: 64 VNCVERFID 72


>gi|6912712 translocase of inner mitochondrial membrane 8 homolog
          B [Homo sapiens]
          Length = 83

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 7  SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66
          ++ G +   +L   +  EQ K Q         +    + C+ KC+ KPG  LD+  + C+
Sbjct: 2  AELGEADEAELQRLVAAEQQKAQFTAQ-----VHHFMELCWDKCVEKPGNRLDSRTENCL 56

Query: 67 AMCMDRYMDAWNTVSRAYNSRLQR 90
          + C+DR++D    ++  +   +Q+
Sbjct: 57 SSCVDRFIDTTLAITSRFAQIVQK 80


>gi|239752419 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 7   SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66
           ++ G +   +L   +  EQ K Q         +    + C+ KC+ KPG  LD+  + C+
Sbjct: 35  AELGEADGAELQHLVAAEQQKAQFTAQ-----VHHFMELCWDKCVEKPGNRLDSCTENCL 89

Query: 67  AMCMDRYMDAWNTVSRAYNSRLQR 90
           + C+D ++D    ++  +   +Q+
Sbjct: 90  SSCVDHFIDTTLAITSRFAQIVQK 113


>gi|239746934 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 7   SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66
           ++ G +   +L   +  EQ K Q         +    + C+ KC+ KPG  LD+  + C+
Sbjct: 35  AELGEADGAELQHLVAAEQQKAQFTAQ-----VHHFMELCWDKCVEKPGNRLDSCTENCL 89

Query: 67  AMCMDRYMDAWNTVSRAYNSRLQR 90
           + C+D ++D    ++  +   +Q+
Sbjct: 90  SSCVDHFIDTTLAITSRFAQIVQK 113


>gi|239757907 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B (yeast) [Homo
           sapiens]
          Length = 136

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 24  EQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCMDRYMDAWNTVSRA 83
           EQ K Q         +    + C+ KC+ KPG  LD+  + C++ C+D ++D    ++  
Sbjct: 72  EQQKAQFTAQ-----VHHFMELCWDKCVEKPGNRLDSCTENCLSSCVDHFIDTTLAITSR 126

Query: 84  YNSRLQR 90
           +   +Q+
Sbjct: 127 FAQIVQK 133


>gi|6912708 translocase of inner mitochondrial membrane 10 homolog
          [Homo sapiens]
          Length = 90

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 17 LDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGK--PGGSLDNSEQKCIAMCMDRYM 74
          +DP L  +Q+  ++ V    ++  RMT  C RKC+        L   E  C+  C+ +Y+
Sbjct: 1  MDP-LRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYL 59

Query: 75 D 75
          D
Sbjct: 60 D 60


>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
          precursor [Homo sapiens]
          Length = 616

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 25 QVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDN-----SEQKCIAMCMDRYMDAWN 78
          QV +QIA     E       +C  KC  +PG  + +     S+  C+    D Y+D+WN
Sbjct: 25 QVALQIAPPCTSEKHYEHLGRCCNKC--EPGKYMSSKCTTTSDSVCLPCGPDEYLDSWN 81


>gi|109255249 keratin 4 [Homo sapiens]
          Length = 594

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 13/18 (72%), Positives = 13/18 (72%)

Query: 3   GGFGSDFGGSGSGKLDPG 20
           GGFG  FGGS SGK  PG
Sbjct: 157 GGFGGGFGGSFSGKGGPG 174


>gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]
          Length = 103

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 25 QVKVQIAVANAQELL---QRMTDKCFRKCI-GKPGGSLDNSEQKCIAMCMDRYMDAWNTV 80
          Q + Q  + N ++ L    RMT+ CF++C+      +LD  E+ C+  C  + + + + +
Sbjct: 4  QQQQQQQLRNLRDFLLVYNRMTELCFQRCVPSLHHRALDAEEEACLHSCAGKLIHSNHRL 63

Query: 81 SRAY 84
            AY
Sbjct: 64 MAAY 67


>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
           sapiens]
          Length = 589

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 34  NAQELLQRMTDKCFRKCIGKPGG--SLDNSEQKCIAMCMDRYMDAWN 78
           N  ++   +T KC R  +G  GG  S    +   I+   DR +  WN
Sbjct: 283 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 329


>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
           sapiens]
          Length = 707

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 34  NAQELLQRMTDKCFRKCIGKPGG--SLDNSEQKCIAMCMDRYMDAWN 78
           N  ++   +T KC R  +G  GG  S    +   I+   DR +  WN
Sbjct: 401 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 447


>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
           sapiens]
          Length = 627

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 34  NAQELLQRMTDKCFRKCIGKPGG--SLDNSEQKCIAMCMDRYMDAWN 78
           N  ++   +T KC R  +G  GG  S    +   I+   DR +  WN
Sbjct: 321 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 367


>gi|109255251 loricrin [Homo sapiens]
          Length = 312

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)

Query: 3   GGFGSDFGGSGSGK 16
           GG GS  GGSGSGK
Sbjct: 280 GGGGSSVGGSGSGK 293


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,736,737
Number of Sequences: 37866
Number of extensions: 140355
Number of successful extensions: 399
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 14
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.