Search of human proteins with 150010589

Search of human proteins with 150010589

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|150010589 interferon induced transmembrane protein 1 (9-27)
[Homo sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|150010589 interferon induced transmembrane protein 1 (9-27) [...   255   7e-69
gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [...   175   9e-45
gi|151101191 interferon induced transmembrane protein 2 (1-8D) [...   169   7e-43
gi|70608168 interferon induced transmembrane protein 5 [Homo sap...    84   4e-17
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]       44   2e-05
gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens]          38   0.002
gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]          38   0.002
gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]          38   0.002
gi|211904185 hypothetical protein LOC387890 [Homo sapiens]             31   0.21 
gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]         30   0.47 
gi|110578657 LOST1 [Homo sapiens]                                      29   0.81 
gi|239750545 PREDICTED: hypothetical protein, partial [Homo sapi...    28   1.8  
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 28   2.3  
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]           27   4.0  
gi|31542835 galactose-3-O-sulfotransferase 4 [Homo sapiens]            27   5.2  

>gi|150010589 interferon induced transmembrane protein 1 (9-27)
           [Homo sapiens]
          Length = 125

 Score =  255 bits (651), Expect = 7e-69
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
           MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS
Sbjct: 1   MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60

Query: 61  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120
           VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ
Sbjct: 61  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120

Query: 121 EKRGY 125
           EKRGY
Sbjct: 121 EKRGY 125


>gi|148612842 interferon-induced transmembrane protein 3 (1-8U)
           [Homo sapiens]
          Length = 133

 Score =  175 bits (443), Expect = 9e-45
 Identities = 89/105 (84%), Positives = 94/105 (89%)

Query: 1   MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
           M KEEHEVAVLGAP +   P STVI+I SETSVPDHVVWSLFNTLF+N CCLGFIAFAYS
Sbjct: 22  MLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVWSLFNTLFMNPCCLGFIAFAYS 81

Query: 61  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLV 105
           VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTI  I++ V
Sbjct: 82  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPV 126


>gi|151101191 interferon induced transmembrane protein 2 (1-8D)
           [Homo sapiens]
          Length = 132

 Score =  169 bits (427), Expect = 7e-43
 Identities = 85/105 (80%), Positives = 91/105 (86%)

Query: 1   MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
           M KEE EVA+LG P +   P STVI+I SETSVPDHVVWSLFNTLF+N CCLGFIAFAYS
Sbjct: 21  MLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFIAFAYS 80

Query: 61  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLV 105
           VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGI MTI  I++ V
Sbjct: 81  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTILLIIIPV 125


>gi|70608168 interferon induced transmembrane protein 5 [Homo
           sapiens]
          Length = 132

 Score = 83.6 bits (205), Expect = 4e-17
 Identities = 36/75 (48%), Positives = 57/75 (76%)

Query: 35  DHVVWSLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGI 94
           DH++WS+F+TL+LN CCLGF+A AYS+K+RD+K+VGD+  A+ + S AKC NI A +  +
Sbjct: 35  DHLIWSVFSTLYLNLCCLGFLALAYSIKARDQKVVGDLEAARRFGSKAKCYNILAAMWTL 94

Query: 95  LMTIGFILLLVFGSV 109
           +  +  + L+V G++
Sbjct: 95  VPPLLLLGLVVTGAL 109


>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
          Length = 340

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 35  DHVVWSLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGI 94
           D+++ ++ +     W  +  +AFAY+V SR+    GDV GAQ     AK L+I AL+ G+
Sbjct: 267 DYIILAILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGV 325

Query: 95  LMTI 98
           L+ I
Sbjct: 326 LIII 329


>gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens]
          Length = 93

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 35  DHVVWSLFNTLFLNWCCL--GFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALIL 92
           D+++ S+  TLF   CCL  G IA  YS ++R     GD+  A+  +  A+ L +++L+ 
Sbjct: 18  DYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 74

Query: 93  GILMTIGFILLLV 105
           G+ ++  +++ +V
Sbjct: 75  GVFVSTSWVIYVV 87


>gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
          Length = 288

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 35  DHVVWSLFNTLFLNWCCL--GFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALIL 92
           D+++ S+  TLF   CCL  G IA  YS ++R     GD+  A+  +  A+ L +++L+ 
Sbjct: 213 DYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 269

Query: 93  GILMTIGFILLLV 105
           G+ ++  +++ +V
Sbjct: 270 GVFVSTSWVIYVV 282


>gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]
          Length = 288

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 35  DHVVWSLFNTLFLNWCCL--GFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALIL 92
           D+++ S+  TLF   CCL  G IA  YS ++R     GD+  A+  +  A+ L +++L+ 
Sbjct: 213 DYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 269

Query: 93  GILMTIGFILLLV 105
           G+ ++  +++ +V
Sbjct: 270 GVFVSTSWVIYVV 282


>gi|211904185 hypothetical protein LOC387890 [Homo sapiens]
          Length = 109

 Score = 31.2 bits (69), Expect = 0.21
 Identities = 16/67 (23%), Positives = 33/67 (49%)

Query: 30 ETSVPDHVVWSLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWA 89
          +  +P + +W    + F     +  +A  +S+ S +    GD  GA+     AK + I +
Sbjct: 30 DVPMPKNYLWLTIVSCFCPAYPINIVALVFSIMSLNSYNDGDYEGARRLGRNAKWVAIAS 89

Query: 90 LILGILM 96
          +I+G+L+
Sbjct: 90 IIIGLLI 96


>gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]
          Length = 172

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 35  DHVVWSLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGI 94
           DH+  ++F+ L   W  +G  AF  + K+      GD+ GA A +  A  L + A+ LG+
Sbjct: 94  DHLGLAVFSMLCCFWP-VGIAAFCLAQKTNKAWAKGDIQGAGAASRRAFLLGVLAVGLGV 152


>gi|110578657 LOST1 [Homo sapiens]
          Length = 177

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 52  LGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILM 96
           L  I    S+ SR     G+V GA+     A+ L+I  +I+GI++
Sbjct: 119 LNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVI 163


>gi|239750545 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 238

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 84  CLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQE 121
           CLNI +L+  IL+T   ++++V GS   +  + QI+++
Sbjct: 173 CLNICSLVFSILLTTR-VIIVVAGSAMSFQAISQILKD 209


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 75  AQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTV 111
           A A+     C + W  +LG+L+T   +L L+FG + +
Sbjct: 452 APAWCPCGSCCSWWKWLLGLLLTWLLLLGLLFGLIAL 488


>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
          Length = 602

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 14/64 (21%), Positives = 25/64 (39%)

Query: 62  KSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQE 121
           KS           A A +S+A C       L  L  +  +    F    V+H++ ++ Q 
Sbjct: 78  KSSSSSSASAAAAAAAASSSASCSRRLGRALNFLFYLALVAAAAFSGWCVHHVLEEVQQV 137

Query: 122 KRGY 125
           +R +
Sbjct: 138 RRSH 141


>gi|31542835 galactose-3-O-sulfotransferase 4 [Homo sapiens]
          Length = 486

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)

Query: 80  STAKCLNIWA-----LILGILMTIGFILLLVFG 107
           S A+ L +W      + LG+ MTIGF L L+ G
Sbjct: 5   SPARTLRLWGPRSLGVALGVFMTIGFALQLLGG 37


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,308,764
Number of Sequences: 37866
Number of extensions: 145996
Number of successful extensions: 552
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 15
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.