Search of human proteins with 148596961

Search of human proteins with 148596961

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148596961 stearoyl-CoA desaturase 5 isoform a [Homo sapiens]
         (330 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148596961 stearoyl-CoA desaturase 5 isoform a [Homo sapiens]       691   0.0  
gi|53759151 stearoyl-CoA desaturase 1 [Homo sapiens]                  413   e-115
gi|148596938 stearoyl-CoA desaturase 5 isoform b [Homo sapiens]       392   e-109
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            33   0.46 
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            33   0.46 
gi|24308227 zinc finger protein 687 [Homo sapiens]                     32   1.0  
gi|153251840 zinc finger protein 839 [Homo sapiens]                    29   5.1  
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    29   6.6  
gi|35493853 otoferlin isoform c [Homo sapiens]                         28   8.6  
gi|35493868 otoferlin isoform b [Homo sapiens]                         28   8.6  
gi|35493860 otoferlin isoform d [Homo sapiens]                         28   8.6  
gi|34740331 otoferlin isoform a [Homo sapiens]                         28   8.6  

>gi|148596961 stearoyl-CoA desaturase 5 isoform a [Homo sapiens]
          Length = 330

 Score =  691 bits (1783), Expect = 0.0
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA
Sbjct: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60

Query: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120
           VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF
Sbjct: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120

Query: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180
           QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL
Sbjct: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180

Query: 181 ADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNS 240
           ADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNS
Sbjct: 181 ADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNS 240

Query: 241 AAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFGLNFNPTTWFIDF 300
           AAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFGLNFNPTTWFIDF
Sbjct: 241 AAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFGLNFNPTTWFIDF 300

Query: 301 MCWLGLATDRKRATKPMIEARKARTGDSSA 330
           MCWLGLATDRKRATKPMIEARKARTGDSSA
Sbjct: 301 MCWLGLATDRKRATKPMIEARKARTGDSSA 330


>gi|53759151 stearoyl-CoA desaturase 1 [Homo sapiens]
          Length = 359

 Score =  413 bits (1062), Expect = e-115
 Identities = 186/284 (65%), Positives = 234/284 (82%)

Query: 46  VWRNVVLMSLLHLGAVYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAK 105
           VWRN++LMSLLHLGA+Y + LIP  K  T LW  F + ++ALG+TAGAHRLWSHRSY+A+
Sbjct: 72  VWRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKAR 131

Query: 106 LPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHR 165
           LPLR+FL +AN+MAFQND++EW+RDHRAHHK+SET ADPHN+RRGFFFSH+GWL VRKH 
Sbjct: 132 LPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHP 191

Query: 166 DVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASI 225
            V EKG  LD++DL A+ +V  QR+YYK  +++MCF++PTLVPWY WGE+  NS F+A+ 
Sbjct: 192 AVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLMMCFILPTLVPWYFWGETFQNSVFVATF 251

Query: 226 LRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSAS 285
           LRY + LN +WLVNSAAH++G RPYDK+ISPR+N LV+LGA+GEGFHNYHH+FP+DYSAS
Sbjct: 252 LRYAVVLNATWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNYHHSFPYDYSAS 311

Query: 286 EFGLNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSS 329
           E+  + N TT+FID M  LGLA DRK+ +K  I AR  RTGD +
Sbjct: 312 EYRWHINFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDGN 355


>gi|148596938 stearoyl-CoA desaturase 5 isoform b [Homo sapiens]
          Length = 256

 Score =  392 bits (1006), Expect = e-109
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA
Sbjct: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60

Query: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120
           VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF
Sbjct: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120

Query: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180
           QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL
Sbjct: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180

Query: 181 ADPVVRIQR 189
           ADPVVRIQR
Sbjct: 181 ADPVVRIQR 189


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 16  AKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           A+EE  AG   S G GG ERP ARG  Q      ++L S + L A
Sbjct: 231 AREEAAAG---SRGRGGAERPAARGSAQQPPLARLLLASAVSLAA 272


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 16  AKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           A+EE  AG   S G GG ERP ARG  Q      ++L S + L A
Sbjct: 231 AREEAAAG---SRGRGGAERPAARGSAQQPPLARLLLASAVSLAA 272


>gi|24308227 zinc finger protein 687 [Homo sapiens]
          Length = 1237

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 11 IPFCDAKEEIRAGLESSEGGGGPERP 36
          IP  DA E I +G E +EG GGP +P
Sbjct: 18 IPDIDANEAIHSGPEENEGPGGPGKP 43


>gi|153251840 zinc finger protein 839 [Homo sapiens]
          Length = 927

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 15 DAKEEIRAGLESSEGGGGPERPGARG 40
          DA+ E   G E   GGGGP  PG  G
Sbjct: 3  DAEPEAGGGSEDGGGGGGPAPPGQSG 28


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 3   GPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIV 46
           GPA  A   P   A E   AG  +  GGGGP+RPG    R+ +V
Sbjct: 74  GPAAPAEGAPGA-APEPPPAG-RARPGGGGPQRPGPPSPRRPLV 115


>gi|35493853 otoferlin isoform c [Homo sapiens]
          Length = 1307

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 268  GEGFHNYHHTFPFDYSASE 286
            GEG  N+ + FPFDY A+E
Sbjct: 1095 GEGNFNWRYLFPFDYLAAE 1113


>gi|35493868 otoferlin isoform b [Homo sapiens]
          Length = 1230

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 268  GEGFHNYHHTFPFDYSASE 286
            GEG  N+ + FPFDY A+E
Sbjct: 1018 GEGNFNWRYLFPFDYLAAE 1036


>gi|35493860 otoferlin isoform d [Homo sapiens]
          Length = 1230

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 268  GEGFHNYHHTFPFDYSASE 286
            GEG  N+ + FPFDY A+E
Sbjct: 1018 GEGNFNWRYLFPFDYLAAE 1036


>gi|34740331 otoferlin isoform a [Homo sapiens]
          Length = 1997

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 268  GEGFHNYHHTFPFDYSASE 286
            GEG  N+ + FPFDY A+E
Sbjct: 1785 GEGNFNWRYLFPFDYLAAE 1803


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,466,146
Number of Sequences: 37866
Number of extensions: 600785
Number of successful extensions: 1710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1695
Number of HSP's gapped (non-prelim): 16
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.