Guide to the Human Genome
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Name: SCD5 Sequence: fasta or formatted (256aa) NCBI GI: 148596938
Description:

stearoyl-CoA desaturase 5 isoform b

Referenced in:

Fatty Acid Synthesis

Other entries for this name:
alt prot [330aa] stearoyl-CoA desaturase 5 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         25           2
 C cysteine            2.3          6           2
 D aspartate           3.9         10           1
 E glutamate           5.5         14           2
 F phenylalanine       4.3         11           3
 G glycine             7.0         18           4
 H histidine           6.2         16           2
 I isoleucine          4.7         12           1
 K lysine              4.7         12           1
 L leucine            12.9         33           2
 M methionine          2.0          5           1
 N asparagine          3.1          8           1
 P proline             4.3         11           1
 Q glutamine           3.1          8           1
 R arginine            8.2         21           2
 S serine              5.1         13           2
 T threonine           3.1          8           1
 V valine              5.9         15           2
 W tryptophan          2.3          6           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stearoyl-CoA desaturase 5 isoform b 
SCD5                  0.725   stearoyl-CoA desaturase 5 isoform a 
SCD                   0.387   stearoyl-CoA desaturase 1 
LOC643355             0.016   PREDICTED: hypothetical protein 
LOC643355             0.016   PREDICTED: hypothetical protein 
ZNF687                0.014   zinc finger protein 687 
ZNF839                0.008   zinc finger protein 839 
TAF4                  0.008   TBP-associated factor 4 
DNAH9                 0.006   dynein, axonemal, heavy chain 9 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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