Guide to the Human Genome
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Search of human proteins with 148529014

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148529014 damage-specific DNA binding protein 1 [Homo
sapiens]
         (1140 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo ...  2268   0.0  
gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens]    2268   0.0  
gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]              217   6e-56
gi|56676371 cleavage and polyadenylation specific factor 1, 160k...    85   3e-16
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ...    34   0.69 
gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|239740724 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]            34   0.69 
gi|34452686 ring finger protein, LIM domain interacting [Homo sa...    32   2.6  
gi|34452684 ring finger protein, LIM domain interacting [Homo sa...    32   2.6  
gi|4557741 platelet-activating factor acetylhydrolase, isoform I...    32   3.4  
gi|38348382 spermatogenesis associated 21 [Homo sapiens]               31   5.9  
gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent R...    31   7.7  

>gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo
            sapiens]
          Length = 1140

 Score = 2268 bits (5877), Expect = 0.0
 Identities = 1140/1140 (100%), Positives = 1140/1140 (100%)

Query: 1    MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60
            MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
Sbjct: 1    MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60

Query: 61   IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120
            IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
Sbjct: 61   IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120

Query: 121  IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180
            IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
Sbjct: 121  IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180

Query: 181  VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240
            VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
Sbjct: 181  VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240

Query: 241  NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
            NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
Sbjct: 241  NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300

Query: 301  RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360
            RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
Sbjct: 301  RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360

Query: 361  DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420
            DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
Sbjct: 361  DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420

Query: 421  TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
            TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
Sbjct: 421  TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480

Query: 481  QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540
            QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
Sbjct: 481  QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540

Query: 541  LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600
            LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
Sbjct: 541  LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600

Query: 601  YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660
            YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
Sbjct: 601  YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660

Query: 661  SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720
            SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
Sbjct: 661  SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720

Query: 721  PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780
            PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
Sbjct: 721  PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780

Query: 781  SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840
            SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
Sbjct: 781  SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840

Query: 841  AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900
            AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
Sbjct: 841  AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900

Query: 901  TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960
            TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
Sbjct: 901  TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960

Query: 961  DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020
            DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
Sbjct: 961  DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020

Query: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080
            STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
Sbjct: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080

Query: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
            KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
Sbjct: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140


>gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens]
          Length = 1140

 Score = 2268 bits (5877), Expect = 0.0
 Identities = 1140/1140 (100%), Positives = 1140/1140 (100%)

Query: 1    MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60
            MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
Sbjct: 1    MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60

Query: 61   IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120
            IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
Sbjct: 61   IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120

Query: 121  IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180
            IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
Sbjct: 121  IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180

Query: 181  VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240
            VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
Sbjct: 181  VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240

Query: 241  NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
            NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
Sbjct: 241  NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300

Query: 301  RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360
            RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
Sbjct: 301  RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360

Query: 361  DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420
            DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
Sbjct: 361  DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420

Query: 421  TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
            TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
Sbjct: 421  TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480

Query: 481  QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540
            QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
Sbjct: 481  QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540

Query: 541  LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600
            LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
Sbjct: 541  LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600

Query: 601  YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660
            YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
Sbjct: 601  YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660

Query: 661  SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720
            SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
Sbjct: 661  SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720

Query: 721  PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780
            PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
Sbjct: 721  PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780

Query: 781  SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840
            SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
Sbjct: 781  SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840

Query: 841  AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900
            AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
Sbjct: 841  AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900

Query: 901  TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960
            TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
Sbjct: 901  TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960

Query: 961  DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020
            DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
Sbjct: 961  DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020

Query: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080
            STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
Sbjct: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080

Query: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
            KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
Sbjct: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140


>gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]
          Length = 1217

 Score =  217 bits (552), Expect = 6e-56
 Identities = 285/1226 (23%), Positives = 489/1226 (39%), Gaps = 150/1226 (12%)

Query: 5    YVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVG-------- 56
            Y +T Q+ T ++  + G+F+  +   +++++   LE+       LRP    G        
Sbjct: 4    YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILEL-------LRPDPNTGKVHTLLTV 56

Query: 57   -MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-R 114
             ++G I  +  FR  G +KD + + +      ILEY+ S    + I   H     + G R
Sbjct: 57   EVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKI---HQETFGKSGCR 113

Query: 115  PSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRD-------NKELKAFNIRLEELHVI-- 165
                G    +DP+ R + +   +    V  L+RD       +  L+A        HV+  
Sbjct: 114  RIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGV 173

Query: 166  DVKF---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG-----PWKQENVEAEAS 217
            DV F   ++ C          DP G      + +L   E + G         E +E   +
Sbjct: 174  DVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGN 233

Query: 218  MVIAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQST----------IVCHNRV 264
             +I VP   +   G +I  +  ITY N      I  PI ++             VC    
Sbjct: 234  FLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATH 293

Query: 265  DPNGSRYLLGDME-GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVF 323
                  + L   E G +F + LE +E M     + ++R++      +A  +  L  G +F
Sbjct: 294  KTKSMFFFLAQTEQGDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLF 348

Query: 324  VGSRLGDSQLVKLNV--DSNEQGSYVVAM-----ETF----------------TNLGPIV 360
            V S  G+  L ++    D +E+  +  AM     +TF                 +L PI+
Sbjct: 349  VASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPIL 408

Query: 361  DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPNR 419
               + DL  +   QL    G     SLR++R+G+ + E A  +LPG    +W +R     
Sbjct: 409  FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIED 468

Query: 420  ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
            E D  +++SFV  T VL + GE VEE    GF+    T  C  +    L+Q+    +R +
Sbjct: 469  EFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHI 527

Query: 480  SQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHT-EMEH 536
              + +  V+EWK P  K I   + N  QVV+A+ G  L Y ++ P  +L + +   EM  
Sbjct: 528  RADKR--VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSA 585

Query: 537  EVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTT 595
            +V C+ +  +      S   A+GL  D + RI+ L PS  L    M      P S+ +  
Sbjct: 586  DVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVE 644

Query: 596  FESSH--------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
               +               YL   L +G L    L+  TG LSD +   LG++P  L   
Sbjct: 645  MGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRV 704

Query: 642  RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
            R      V A S R  + YS   +   + ++ + + +     S+  P+ +   + +TL I
Sbjct: 705  RMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764

Query: 702  GTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
              ++++  +  +   PL  +PRK      S    ++ +     D +  T A +     Q 
Sbjct: 765  LALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET-----DHNAYTEATKAQRKQQM 819

Query: 761  LSSSVSS------------SKLFSSSTAPHETSFGEEVEVHN-----LLIIDQHTFEVLH 803
                V +            +  F +   P E+ FG     +      + +++      L 
Sbjct: 820  AEEMVEAAGEDERELAAEMAAAFLNENLP-ESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878

Query: 804  AHQFLQNEYALSLVSCKLGK-DPNTYFIVGTAMVYPEEAEPKQGRIVVFQY----SDGKL 858
              Q  QNE A S+  C+      + Y +VG A           G   V+ Y    +  KL
Sbjct: 879  LVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGF-VYTYKLVNNGEKL 937

Query: 859  QTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTK 917
            + + +  V+    ++  F G++L  +   +R+Y+   +K LR  E  H  N ++  ++T 
Sbjct: 938  EFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-GIQTI 996

Query: 918  GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 977
            G  ++V D+  S + + YK  E      A D  P W++   +LD D   GA+   N+ V 
Sbjct: 997  GHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV 1056

Query: 978  QKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-NLGETSTPTQ---------GS 1027
            +       + +        L+  G          ++M  ++GET    Q          S
Sbjct: 1057 RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSES 1116

Query: 1028 VLFGTVNGMIG-LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086
            +++ T++G IG LV   S   ++    ++  L      +   +H  +RS++      P  
Sbjct: 1117 LVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYF-----PVK 1171

Query: 1087 GFIDGDLIESFLDISRPKMQEVVANL 1112
              IDGDL E F  +   K + V   L
Sbjct: 1172 NVIDGDLCEQFNSMEPNKQKNVSEEL 1197


>gi|56676371 cleavage and polyadenylation specific factor 1, 160kDa
            [Homo sapiens]
          Length = 1443

 Score = 85.1 bits (209), Expect = 3e-16
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 34/327 (10%)

Query: 828  YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
            Y   GT ++  EE   + GRI++    +            K + + EKE KG V ++   
Sbjct: 1120 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1178

Query: 877  NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALY-LKTKGDFILVGDLMRSVLLLAY 935
            NG L+++I    +++ W+      T     +  + ++ + +  +FIL  D+M+S+ LL Y
Sbjct: 1179 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRY 1236

Query: 936  KPMEGNFEEIARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDSAATTDEERQHL 992
            +        ++RD  P  + +V+ + D+    FL ++   NL V      A        L
Sbjct: 1237 QEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRL 1296

Query: 993  QEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL--FGTVNGMIGLVTSLSES 1046
                 FH+G  VN F    C G+   + L + S   +   +  F T++G IGL+  + E 
Sbjct: 1297 LRRADFHVGAHVNTFWRTPCRGAT--EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEK 1354

Query: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKT--EPATGFIDGDLIESFLDISRPK 1104
             Y  LL +QN L  ++     +    +R  H +R+T        +DG+L+  +L +S  +
Sbjct: 1355 TYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTME 1414

Query: 1105 MQEVVANLQYDDGSGMKREATADDLIK 1131
              E+   +      G   +   DDL++
Sbjct: 1415 RSELAKKI------GTTPDIILDDLLE 1435



 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 70/395 (17%), Positives = 154/395 (38%), Gaps = 75/395 (18%)

Query: 9   AQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTA------------------EGLR 50
           A  PT +   +  +F +  + NL++A  ++L +Y +                    E L 
Sbjct: 8   AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67

Query: 51  PVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAH---GN 107
                  +G +  M   +  G  +D L +        ++EY      +  ++  +     
Sbjct: 68  LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127

Query: 108 VQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK----------------- 150
           ++D   +   T  + + DP+ R   + +Y     V+P  R++                  
Sbjct: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFL 186

Query: 151 -----ELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQ---GRHVKTYE------VS 196
                +++A + +L  L++ID++FL+G   PT+  +++  Q   GR     +      +S
Sbjct: 187 PSYIIDVRALDEKL--LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAIS 244

Query: 197 LR-EKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN-------------- 241
           L   ++ +   W   ++  + +  +AVP+P GG ++    S+ Y N              
Sbjct: 245 LNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLT 304

Query: 242 -GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
            G     +      + T+ C      +  + ++    G +++L L      DG  +++  
Sbjct: 305 TGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTL----ITDGMRSVRAF 360

Query: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVK 335
             +    + +   +  ++ G +F+GSRLG+S L+K
Sbjct: 361 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 395



 Score = 48.5 bits (114), Expect = 4e-05
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 36/164 (21%)

Query: 351 ETFTNLGPIVDMCVVD---LERQGQG------QLVTCSGAFKEGSLRIIRNGIGIHEHAS 401
           ++  N+GP  +  V +   L  + Q       ++V CSG  K G+L +++  I      +
Sbjct: 467 DSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTT 526

Query: 402 IDLPGIKGLWPLRSDPNRETDDT-------------------------LVLSFVGQTRVL 436
            +LPG   +W + +   +E +D                          L+LS    T +L
Sbjct: 527 FELPGCYDMWTVIAPVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMIL 586

Query: 437 MLNGEEVEETELMGFVDDQQTFFCGNVA-HQQLIQITSASVRLV 479
              G+E+ E +  GF     T F GN+  ++ ++Q++   +RL+
Sbjct: 587 Q-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLL 629


>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1531

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1521

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1612

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1542

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 799 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 857

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 858 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 914

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 915 TTTSTEGSETTTASTEGSEITTVSTTGSETT 945


>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
           sapiens]
          Length = 1521

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1612

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|239740724 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1704

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1531

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1531

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1521

 Score = 34.3 bits (77), Expect = 0.69
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
           +G++ T+  T  S  TT V   S + T +++ N +   ++    E   +    S+  P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836

Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
            A    S  T  T  E  +    +    E+         +     + S      T G  T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893

Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
               +  ++  ++S   S++ + ST   ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924


>gi|34452686 ring finger protein, LIM domain interacting [Homo
           sapiens]
          Length = 624

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 739 RIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVE 787
           R E +   GG+     S S+ + SSS SSS   SSS++P  +S GE  E
Sbjct: 439 RAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSE 487


>gi|34452684 ring finger protein, LIM domain interacting [Homo
           sapiens]
          Length = 624

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 739 RIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVE 787
           R E +   GG+     S S+ + SSS SSS   SSS++P  +S GE  E
Sbjct: 439 RAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSE 487


>gi|4557741 platelet-activating factor acetylhydrolase, isoform Ib,
           alpha subunit [Homo sapiens]
          Length = 410

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 848 IVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINS--TVRLYEWTTEKELRTECNH 905
           I V+ Y  G  +   +           + +GKLLAS ++  T++L+++   + +RT   H
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191

Query: 906 YNNIMALYLKTKGDFIL 922
            +N+ ++ +   GD I+
Sbjct: 192 DHNVSSVAIMPNGDHIV 208


>gi|38348382 spermatogenesis associated 21 [Homo sapiens]
          Length = 469

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 438 LNGE-EVEETELMGFVDDQQTFFCG-----------NVAHQQLIQITSASVRLVSQEPKA 485
           +NG+  V+  + +  + D + FFC            +  H  L +I S  V +++  P+A
Sbjct: 269 VNGDGRVDFKDFLAVMTDTRRFFCSVEQNALSDMAPHNPHTLLFEILSLLVEMLAL-PEA 327

Query: 486 LVSEWKEPQAKNISVASCNSSQVVVAVGR-ALYYLQIHPQE 525
           ++ E      K +   +C + ++  AVGR  L  L  +PQ+
Sbjct: 328 VLEEITNYYQKKLKEGTCKAQEMEAAVGRLRLQKLPYNPQQ 368


>gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac
            exchange factor 1 [Homo sapiens]
          Length = 1659

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 1049 NLLLDMQNRLNKVIKSVGKIEHSFW-----RSFHTERKTEPATGFIDGDLIESFLDISRP 1103
            NL+ D + +L+ V K     E   W         TE         ++  +I    D  + 
Sbjct: 426  NLIKDRRRKLSTVPKCFLGNEFVAWLLEIGEISKTEEGVNLGQALLENGIIHHVSDKHQF 485

Query: 1104 KMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
            K ++V+   +YDDG+   R    D + K V    R+H
Sbjct: 486  KNEQVMYRFRYDDGTYKARSELEDIMSKGVRLYCRLH 522


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,832,338
Number of Sequences: 37866
Number of extensions: 1792189
Number of successful extensions: 4583
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4484
Number of HSP's gapped (non-prelim): 252
length of query: 1140
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1027
effective length of database: 13,968,660
effective search space: 14345813820
effective search space used: 14345813820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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