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Search of human proteins with 148529014
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148529014 damage-specific DNA binding protein 1 [Homo
sapiens]
(1140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo ... 2268 0.0
gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens] 2268 0.0
gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens] 217 6e-56
gi|56676371 cleavage and polyadenylation specific factor 1, 160k... 85 3e-16
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 34 0.69
gi|239740777 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|239740724 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 34 0.69
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 32 2.6
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 32 2.6
gi|4557741 platelet-activating factor acetylhydrolase, isoform I... 32 3.4
gi|38348382 spermatogenesis associated 21 [Homo sapiens] 31 5.9
gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent R... 31 7.7
>gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo
sapiens]
Length = 1140
Score = 2268 bits (5877), Expect = 0.0
Identities = 1140/1140 (100%), Positives = 1140/1140 (100%)
Query: 1 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
Sbjct: 1 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60
Query: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120
Query: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180
Query: 181 VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
Sbjct: 181 VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240
Query: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
Query: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360
Query: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420
Query: 421 TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
Sbjct: 421 TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540
QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540
Query: 541 LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
Sbjct: 541 LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600
Query: 601 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
Sbjct: 601 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660
Query: 661 SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
Sbjct: 661 SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720
Query: 721 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
Sbjct: 721 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780
Query: 781 SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
Sbjct: 781 SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840
Query: 841 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
Sbjct: 841 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900
Query: 901 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
Sbjct: 901 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960
Query: 961 DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
Sbjct: 961 DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020
Query: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
Sbjct: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080
Query: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
Sbjct: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens]
Length = 1140
Score = 2268 bits (5877), Expect = 0.0
Identities = 1140/1140 (100%), Positives = 1140/1140 (100%)
Query: 1 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
Sbjct: 1 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK 60
Query: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 120
Query: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF 180
Query: 181 VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
Sbjct: 181 VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240
Query: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
Query: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360
Query: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420
Query: 421 TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
Sbjct: 421 TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540
QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC 540
Query: 541 LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
Sbjct: 541 LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 600
Query: 601 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
Sbjct: 601 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 660
Query: 661 SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
Sbjct: 661 SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 720
Query: 721 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
Sbjct: 721 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 780
Query: 781 SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
Sbjct: 781 SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 840
Query: 841 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
Sbjct: 841 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR 900
Query: 901 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
Sbjct: 901 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 960
Query: 961 DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
Sbjct: 961 DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET 1020
Query: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
Sbjct: 1021 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 1080
Query: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
Sbjct: 1081 KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]
Length = 1217
Score = 217 bits (552), Expect = 6e-56
Identities = 285/1226 (23%), Positives = 489/1226 (39%), Gaps = 150/1226 (12%)
Query: 5 YVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVG-------- 56
Y +T Q+ T ++ + G+F+ + +++++ LE+ LRP G
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILEL-------LRPDPNTGKVHTLLTV 56
Query: 57 -MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-R 114
++G I + FR G +KD + + + ILEY+ S + I H + G R
Sbjct: 57 EVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKI---HQETFGKSGCR 113
Query: 115 PSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRD-------NKELKAFNIRLEELHVI-- 165
G +DP+ R + + + V L+RD + L+A HV+
Sbjct: 114 RIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGV 173
Query: 166 DVKF---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG-----PWKQENVEAEAS 217
DV F ++ C DP G + +L E + G E +E +
Sbjct: 174 DVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGN 233
Query: 218 MVIAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQST----------IVCHNRV 264
+I VP + G +I + ITY N I PI ++ VC
Sbjct: 234 FLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATH 293
Query: 265 DPNGSRYLLGDME-GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVF 323
+ L E G +F + LE +E M + ++R++ +A + L G +F
Sbjct: 294 KTKSMFFFLAQTEQGDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLF 348
Query: 324 VGSRLGDSQLVKLNV--DSNEQGSYVVAM-----ETF----------------TNLGPIV 360
V S G+ L ++ D +E+ + AM +TF +L PI+
Sbjct: 349 VASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPIL 408
Query: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPNR 419
+ DL + QL G SLR++R+G+ + E A +LPG +W +R
Sbjct: 409 FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIED 468
Query: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
E D +++SFV T VL + GE VEE GF+ T C + L+Q+ +R +
Sbjct: 469 EFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHI 527
Query: 480 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHT-EMEH 536
+ + V+EWK P K I + N QVV+A+ G L Y ++ P +L + + EM
Sbjct: 528 RADKR--VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSA 585
Query: 537 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTT 595
+V C+ + + S A+GL D + RI+ L PS L M P S+ +
Sbjct: 586 DVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVE 644
Query: 596 FESSH--------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
+ YL L +G L L+ TG LSD + LG++P L
Sbjct: 645 MGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRV 704
Query: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
R V A S R + YS + + ++ + + + S+ P+ + + +TL I
Sbjct: 705 RMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRI 764
Query: 702 GTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
++++ + + PL +PRK S ++ + D + T A + Q
Sbjct: 765 LALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET-----DHNAYTEATKAQRKQQM 819
Query: 761 LSSSVSS------------SKLFSSSTAPHETSFGEEVEVHN-----LLIIDQHTFEVLH 803
V + + F + P E+ FG + + +++ L
Sbjct: 820 AEEMVEAAGEDERELAAEMAAAFLNENLP-ESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878
Query: 804 AHQFLQNEYALSLVSCKLGK-DPNTYFIVGTAMVYPEEAEPKQGRIVVFQY----SDGKL 858
Q QNE A S+ C+ + Y +VG A G V+ Y + KL
Sbjct: 879 LVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGF-VYTYKLVNNGEKL 937
Query: 859 QTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTK 917
+ + + V+ ++ F G++L + +R+Y+ +K LR E H N ++ ++T
Sbjct: 938 EFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-GIQTI 996
Query: 918 GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC 977
G ++V D+ S + + YK E A D P W++ +LD D GA+ N+ V
Sbjct: 997 GHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV 1056
Query: 978 QKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-NLGETSTPTQ---------GS 1027
+ + + L+ G ++M ++GET Q S
Sbjct: 1057 RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSES 1116
Query: 1028 VLFGTVNGMIG-LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086
+++ T++G IG LV S ++ ++ L + +H +RS++ P
Sbjct: 1117 LVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYF-----PVK 1171
Query: 1087 GFIDGDLIESFLDISRPKMQEVVANL 1112
IDGDL E F + K + V L
Sbjct: 1172 NVIDGDLCEQFNSMEPNKQKNVSEEL 1197
>gi|56676371 cleavage and polyadenylation specific factor 1, 160kDa
[Homo sapiens]
Length = 1443
Score = 85.1 bits (209), Expect = 3e-16
Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 34/327 (10%)
Query: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSD-----------GKLQTVAEKEVKGAVYSMVEF 876
Y GT ++ EE + GRI++ + K + + EKE KG V ++
Sbjct: 1120 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1178
Query: 877 NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALY-LKTKGDFILVGDLMRSVLLLAY 935
NG L+++I +++ W+ T + + ++ + + +FIL D+M+S+ LL Y
Sbjct: 1179 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRY 1236
Query: 936 KPMEGNFEEIARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDSAATTDEERQHL 992
+ ++RD P + +V+ + D+ FL ++ NL V A L
Sbjct: 1237 QEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRL 1296
Query: 993 QEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL--FGTVNGMIGLVTSLSES 1046
FH+G VN F C G+ + L + S + + F T++G IGL+ + E
Sbjct: 1297 LRRADFHVGAHVNTFWRTPCRGAT--EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEK 1354
Query: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKT--EPATGFIDGDLIESFLDISRPK 1104
Y LL +QN L ++ + +R H +R+T +DG+L+ +L +S +
Sbjct: 1355 TYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTME 1414
Query: 1105 MQEVVANLQYDDGSGMKREATADDLIK 1131
E+ + G + DDL++
Sbjct: 1415 RSELAKKI------GTTPDIILDDLLE 1435
Score = 53.5 bits (127), Expect = 1e-06
Identities = 70/395 (17%), Positives = 154/395 (38%), Gaps = 75/395 (18%)
Query: 9 AQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTA------------------EGLR 50
A PT + + +F + + NL++A ++L +Y + E L
Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67
Query: 51 PVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAH---GN 107
+G + M + G +D L + ++EY + ++ +
Sbjct: 68 LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127
Query: 108 VQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK----------------- 150
++D + T + + DP+ R + +Y V+P R++
Sbjct: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFL 186
Query: 151 -----ELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQ---GRHVKTYE------VS 196
+++A + +L L++ID++FL+G PT+ +++ Q GR + +S
Sbjct: 187 PSYIIDVRALDEKL--LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAIS 244
Query: 197 LR-EKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN-------------- 241
L ++ + W ++ + + +AVP+P GG ++ S+ Y N
Sbjct: 245 LNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLT 304
Query: 242 -GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300
G + + T+ C + + ++ G +++L L DG +++
Sbjct: 305 TGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTL----ITDGMRSVRAF 360
Query: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVK 335
+ + + + ++ G +F+GSRLG+S L+K
Sbjct: 361 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 395
Score = 48.5 bits (114), Expect = 4e-05
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 36/164 (21%)
Query: 351 ETFTNLGPIVDMCVVD---LERQGQG------QLVTCSGAFKEGSLRIIRNGIGIHEHAS 401
++ N+GP + V + L + Q ++V CSG K G+L +++ I +
Sbjct: 467 DSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTT 526
Query: 402 IDLPGIKGLWPLRSDPNRETDDT-------------------------LVLSFVGQTRVL 436
+LPG +W + + +E +D L+LS T +L
Sbjct: 527 FELPGCYDMWTVIAPVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMIL 586
Query: 437 MLNGEEVEETELMGFVDDQQTFFCGNVA-HQQLIQITSASVRLV 479
G+E+ E + GF T F GN+ ++ ++Q++ +RL+
Sbjct: 587 Q-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLL 629
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 799 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 857
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 858 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 914
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 915 TTTSTEGSETTTASTEGSEITTVSTTGSETT 945
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|239740724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1704
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 34.3 bits (77), Expect = 0.69
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 631 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 690
+G++ T+ T S TT V S + T +++ N + ++ E + S+ P S
Sbjct: 778 MGSETTMASTIGS-ETTKVSTASSKMTTVFTENSETTIASTTASETTTVSTAGSETIPAS 836
Query: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750
A S T T E + + E+ + + S T G T
Sbjct: 837 TA---GSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATTIGSETTTASTEGSET 893
Query: 751 ALRPSASTQALSSSVSSSKLFSSSTAPHETS 781
+ ++ ++S S++ + ST ET+
Sbjct: 894 TTTSTEGSETTTASTEGSEITTVSTTGSETT 924
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 32.3 bits (72), Expect = 2.6
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 739 RIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVE 787
R E + GG+ S S+ + SSS SSS SSS++P +S GE E
Sbjct: 439 RAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSE 487
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 32.3 bits (72), Expect = 2.6
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 739 RIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVE 787
R E + GG+ S S+ + SSS SSS SSS++P +S GE E
Sbjct: 439 RAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSE 487
>gi|4557741 platelet-activating factor acetylhydrolase, isoform Ib,
alpha subunit [Homo sapiens]
Length = 410
Score = 32.0 bits (71), Expect = 3.4
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 848 IVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINS--TVRLYEWTTEKELRTECNH 905
I V+ Y G + + + +GKLLAS ++ T++L+++ + +RT H
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 906 YNNIMALYLKTKGDFIL 922
+N+ ++ + GD I+
Sbjct: 192 DHNVSSVAIMPNGDHIV 208
>gi|38348382 spermatogenesis associated 21 [Homo sapiens]
Length = 469
Score = 31.2 bits (69), Expect = 5.9
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 438 LNGE-EVEETELMGFVDDQQTFFCG-----------NVAHQQLIQITSASVRLVSQEPKA 485
+NG+ V+ + + + D + FFC + H L +I S V +++ P+A
Sbjct: 269 VNGDGRVDFKDFLAVMTDTRRFFCSVEQNALSDMAPHNPHTLLFEILSLLVEMLAL-PEA 327
Query: 486 LVSEWKEPQAKNISVASCNSSQVVVAVGR-ALYYLQIHPQE 525
++ E K + +C + ++ AVGR L L +PQ+
Sbjct: 328 VLEEITNYYQKKLKEGTCKAQEMEAAVGRLRLQKLPYNPQQ 368
>gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac
exchange factor 1 [Homo sapiens]
Length = 1659
Score = 30.8 bits (68), Expect = 7.7
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 1049 NLLLDMQNRLNKVIKSVGKIEHSFW-----RSFHTERKTEPATGFIDGDLIESFLDISRP 1103
NL+ D + +L+ V K E W TE ++ +I D +
Sbjct: 426 NLIKDRRRKLSTVPKCFLGNEFVAWLLEIGEISKTEEGVNLGQALLENGIIHHVSDKHQF 485
Query: 1104 KMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
K ++V+ +YDDG+ R D + K V R+H
Sbjct: 486 KNEQVMYRFRYDDGTYKARSELEDIMSKGVRLYCRLH 522
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,832,338
Number of Sequences: 37866
Number of extensions: 1792189
Number of successful extensions: 4583
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4484
Number of HSP's gapped (non-prelim): 252
length of query: 1140
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1027
effective length of database: 13,968,660
effective search space: 14345813820
effective search space used: 14345813820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.