Search of human proteins with 148229977

Search of human proteins with 148229977

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148229977 hypothetical protein LOC348262 [Homo sapiens]
         (97 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148229977 hypothetical protein LOC348262 [Homo sapiens]            197   1e-51
gi|126722894 hypothetical protein LOC348262 [Homo sapiens]            197   1e-51
gi|33300670 hypothetical protein LOC84331 [Homo sapiens]               72   1e-13
gi|171906567 peripheral benzodiazepine receptor-associated prote...    29   0.92 
gi|171906559 peripheral benzodiazepine receptor-associated prote...    29   0.92 
gi|38176300 nestin [Homo sapiens]                                      28   1.2  
gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ...    28   1.2  
gi|193788632 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform...    28   1.2  
gi|4507555 thymopoietin isoform alpha [Homo sapiens]                   28   2.1  
gi|130502140 NEZHA isoform 2 [Homo sapiens]                            27   4.6  
gi|122937255 NEZHA isoform 1 [Homo sapiens]                            27   4.6  
gi|14670354 general transcription factor II, i isoform 3 [Homo s...    27   4.6  
gi|14670352 general transcription factor II, i isoform 2 [Homo s...    27   4.6  
gi|14670350 general transcription factor II, i isoform 1 [Homo s...    27   4.6  
gi|169881252 general transcription factor II, i isoform 4 [Homo ...    27   4.6  
gi|33188459 B-Raf [Homo sapiens]                                       26   6.0  
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]    26   7.8  

>gi|148229977 hypothetical protein LOC348262 [Homo sapiens]
          Length = 97

 Score =  197 bits (501), Expect = 1e-51
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MTSSPVSRVVYNGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQVPGGER 60
          MTSSPVSRVVYNGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQVPGGER
Sbjct: 1  MTSSPVSRVVYNGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQVPGGER 60

Query: 61 GLVEEYVEKVPNPSLKTFKPIDLSDLKRRSTQDAKKS 97
          GLVEEYVEKVPNPSLKTFKPIDLSDLKRRSTQDAKKS
Sbjct: 61 GLVEEYVEKVPNPSLKTFKPIDLSDLKRRSTQDAKKS 97


>gi|126722894 hypothetical protein LOC348262 [Homo sapiens]
          Length = 97

 Score =  197 bits (501), Expect = 1e-51
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MTSSPVSRVVYNGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQVPGGER 60
          MTSSPVSRVVYNGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQVPGGER
Sbjct: 1  MTSSPVSRVVYNGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQVPGGER 60

Query: 61 GLVEEYVEKVPNPSLKTFKPIDLSDLKRRSTQDAKKS 97
          GLVEEYVEKVPNPSLKTFKPIDLSDLKRRSTQDAKKS
Sbjct: 61 GLVEEYVEKVPNPSLKTFKPIDLSDLKRRSTQDAKKS 97


>gi|33300670 hypothetical protein LOC84331 [Homo sapiens]
          Length = 160

 Score = 71.6 bits (174), Expect = 1e-13
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 10/90 (11%)

Query: 3   SSPVSRVVYNGKRTSSPRSPPSS------SEIFTPAHEENVRFIYEAWQGVERDLRGQVP 56
           SSP  R+V+N  R +  R+P +S       E +T AHEENVRF+ EAWQ V++ L G  P
Sbjct: 60  SSPGPRLVFN--RVNGRRAPSTSPSFEGTQETYTVAHEENVRFVSEAWQQVQQQLDGG-P 116

Query: 57  GGERG-LVEEYVEKVPNPSLKTFKPIDLSD 85
            GE G    +YVE+ PNP L+ F PIDL +
Sbjct: 117 AGEGGPRPVQYVERTPNPRLQNFVPIDLDE 146


>gi|171906567 peripheral benzodiazepine receptor-associated protein
           1 isoform b [Homo sapiens]
          Length = 1797

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 53  GQVPGGERGLV-EEYVEKVPNPSLKTFKPIDLSDLKRRS 90
           G++  G RGLV   +VE+V +  L T  P +L+DL   S
Sbjct: 640 GELMDGRRGLVPSNFVERVSDDDLLTSLPPELADLSHSS 678


>gi|171906559 peripheral benzodiazepine receptor-associated protein
           1 isoform a [Homo sapiens]
          Length = 1857

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 53  GQVPGGERGLV-EEYVEKVPNPSLKTFKPIDLSDLKRRS 90
           G++  G RGLV   +VE+V +  L T  P +L+DL   S
Sbjct: 700 GELMDGRRGLVPSNFVERVSDDDLLTSLPPELADLSHSS 738


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8   RVVYNGKRTSSPR--SPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQVPGGERGL 62
           RV  N +   +PR  +PP       P  EE  R + EAW+G  R  + +V   E  L
Sbjct: 148 RVGLNAQAACAPRCPAPPRGPPAPAPEVEELARRLGEAWRGAVRGYQERVAHMETSL 204


>gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform 1
           [Homo sapiens]
          Length = 621

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 1   MTSSPVSRVVYNGKRTSSPRSPPSSS-------EIFTPAHEENVRF 39
           M S PV R  +N    +   S PS S       E+FTP  E N R+
Sbjct: 147 MLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFTPVFERNSRW 192


>gi|193788632 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform 2
           [Homo sapiens]
          Length = 568

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 1   MTSSPVSRVVYNGKRTSSPRSPPSSS-------EIFTPAHEENVRF 39
           M S PV R  +N    +   S PS S       E+FTP  E N R+
Sbjct: 147 MLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFTPVFERNSRW 192


>gi|4507555 thymopoietin isoform alpha [Homo sapiens]
          Length = 694

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 25  SSEIFTPAHEENVRFIYEAWQGVERDL 51
           +SE+  P HE  ++ I E WQ V+R L
Sbjct: 487 ASELSFPFHESILKVIEEEWQQVDRQL 513


>gi|130502140 NEZHA isoform 2 [Homo sapiens]
          Length = 1249

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/39 (41%), Positives = 16/39 (41%)

Query: 42  EAWQGVERDLRGQVPGGERGLVEEYVEKVPNPSLKTFKP 80
           EA    E    G VPGGER   E   E    P   TF P
Sbjct: 648 EAEAEAEEADSGPVPGGERPAGEGQGEPTSRPKAVTFSP 686


>gi|122937255 NEZHA isoform 1 [Homo sapiens]
          Length = 1276

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/39 (41%), Positives = 16/39 (41%)

Query: 42  EAWQGVERDLRGQVPGGERGLVEEYVEKVPNPSLKTFKP 80
           EA    E    G VPGGER   E   E    P   TF P
Sbjct: 675 EAEAEAEEADSGPVPGGERPAGEGQGEPTSRPKAVTFSP 713


>gi|14670354 general transcription factor II, i isoform 3 [Homo
           sapiens]
          Length = 977

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 12  NGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQV 55
           N  +TS+ R+P  ++    P       F +EAW     DL+ +V
Sbjct: 673 NNPQTSAVRTPTQTNGSNVPFKPRGREFSFEAWNAKITDLKQKV 716


>gi|14670352 general transcription factor II, i isoform 2 [Homo
           sapiens]
          Length = 978

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 12  NGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQV 55
           N  +TS+ R+P  ++    P       F +EAW     DL+ +V
Sbjct: 674 NNPQTSAVRTPTQTNGSNVPFKPRGREFSFEAWNAKITDLKQKV 717


>gi|14670350 general transcription factor II, i isoform 1 [Homo
           sapiens]
          Length = 998

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 12  NGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQV 55
           N  +TS+ R+P  ++    P       F +EAW     DL+ +V
Sbjct: 694 NNPQTSAVRTPTQTNGSNVPFKPRGREFSFEAWNAKITDLKQKV 737


>gi|169881252 general transcription factor II, i isoform 4 [Homo
           sapiens]
          Length = 957

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 12  NGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRGQV 55
           N  +TS+ R+P  ++    P       F +EAW     DL+ +V
Sbjct: 653 NNPQTSAVRTPTQTNGSNVPFKPRGREFSFEAWNAKITDLKQKV 696


>gi|33188459 B-Raf [Homo sapiens]
          Length = 766

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 17  SSPRSPPSSS---EIFTPAHEENVRFIYEAWQGVERDLRGQVPGGERGLVEEYVEKVPNP 73
           SSP +P S S   +I T         I + ++  + D R Q    +R          PN 
Sbjct: 316 SSPSAPASDSIGPQILTSPSPSKSIPIPQPFRPADEDHRNQFGQRDRS------SSAPNV 369

Query: 74  SLKTFKPIDLSDLKR 88
            + T +P+++ DL R
Sbjct: 370 HINTIEPVNIDDLIR 384


>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 8   RVVYNGKRTSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVER 49
           +V Y           P +  + T  H+ + RF+ E W+ V+R
Sbjct: 583 KVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVDR 624


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,349,994
Number of Sequences: 37866
Number of extensions: 199963
Number of successful extensions: 431
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 17
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.