Guide to the Human Genome
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Name: EPM2A Sequence: fasta or formatted (317aa) NCBI GI: 66346728
Description:

laforin isoform b

Referenced in:

Dual-Specificity Phosphatases

Other entries for this name:
alt prot [331aa] laforin isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         28           2
 C cysteine            2.5          8           2
 D aspartate           3.5         11           1
 E glutamate           7.9         25           2
 F phenylalanine       2.8          9           1
 G glycine             9.5         30           2
 H histidine           3.8         12           2
 I isoleucine          3.8         12           1
 K lysine              2.8          9           1
 L leucine             8.8         28           2
 M methionine          3.5         11           1
 N asparagine          3.8         12           2
 P proline             6.6         21           2
 Q glutamine           3.5         11           1
 R arginine            6.0         19           1
 S serine              2.8          9           2
 T threonine           5.0         16           2
 V valine              7.6         24           3
 W tryptophan          3.2         10           1
 Y tyrosine            3.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laforin isoform b 
EPM2A                 0.977   laforin isoform a 
DUSP16                0.026   dual specificity phosphatase 16 
DUSP5                 0.026   dual specificity phosphatase 5 
PTPMT1                0.025   protein tyrosine phosphatase, mitochondrial 1 isofo...
DUSP22                0.023   dual specificity phosphatase 22 
DUSP15                0.018   dual specificity phosphatase 15 isoform a 
DUSP9                 0.018   dual specificity phosphatase 9 
DUSP7                 0.017   dual specificity phosphatase 7 
DUSP12                0.017   dual specificity phosphatase 12 
DUSP10                0.017   dual specificity phosphatase 10 isoform b 
DUSP10                0.017   dual specificity phosphatase 10 isoform b 
DUSP10                0.017   dual specificity phosphatase 10 isoform a 
LOC100290651          0.015   PREDICTED: hypothetical protein XP_002347464 
LOC643827             0.015   PREDICTED: similar to cell recognition molecule CAS...
STYX                  0.015   serine/threonine/tyrosine interacting protein [Homo...
STYX                  0.015   serine/threonine/tyrosine interacting protein 
DUSP8                 0.015   dual specificity phosphatase 8 
DUSP2                 0.014   dual specificity phosphatase 2 
SSH3                  0.014   slingshot homolog 3 
DUSP21                0.014   dual specificity phosphatase 21 
DUSP19                0.014   dual specificity phosphatase 19 isoform 1 
DUSP6                 0.012   dual specificity phosphatase 6 isoform a 
DUSP1                 0.012   dual specificity phosphatase 1 
SSH1                  0.012   slingshot 1 isoform 1 
SSH1                  0.012   slingshot 1 isoform 3 
SSH1                  0.012   slingshot 1 isoform 2 
DUSP19                0.011   dual specificity phosphatase 19 isoform 2 
DUSP28                0.011   dual specificity phosphatase 28 
SSH2                  0.011   slingshot 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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