Guide to the Human Genome
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Name: PATZ1 Sequence: fasta or formatted (641aa) NCBI GI: 14670362
Description:

POZ (BTB) and AT hook containing zinc finger 1 long A isoform

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [687aa] POZ (BTB) and AT hook containing zinc finger 1 long C isoform
alt prot [537aa] POZ (BTB) and AT hook containing zinc finger 1 short isoform
alt prot [537aa] POZ (BTB) and AT hook containing zinc finger 1 long B isoform
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         52           2
 C cysteine            3.7         24           1
 D aspartate           5.3         34           1
 E glutamate           5.0         32           3
 F phenylalanine       3.9         25           2
 G glycine            10.0         64           3
 H histidine           3.4         22           1
 I isoleucine          3.3         21           1
 K lysine              5.1         33           2
 L leucine             8.3         53           2
 M methionine          2.5         16           1
 N asparagine          3.1         20           1
 P proline             7.5         48           3
 Q glutamine           4.4         28           2
 R arginine            6.4         41           1
 S serine              9.8         63           2
 T threonine           2.7         17           1
 V valine              5.3         34           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POZ (BTB) and AT hook containing zinc finger 1 long ... 
PATZ1                 0.983   POZ (BTB) and AT hook containing zinc finger 1 long ...
PATZ1                 0.780   POZ (BTB) and AT hook containing zinc finger 1 long ...
PATZ1                 0.684   POZ (BTB) and AT hook containing zinc finger 1 short...
MAZ                   0.186   MYC-associated zinc finger protein isoform 1 
MAZ                   0.184   MYC-associated zinc finger protein isoform 2 
VEZF1                 0.163   zinc finger protein 161 
ZNF559                0.095   zinc finger protein 559 
ZNF493                0.094   zinc finger protein 493 isoform 1 
ZNF493                0.094   zinc finger protein 493 isoform 3 
ZNF814                0.093   zinc finger protein 814 
LOC654254             0.093   zinc finger protein LOC654254 
ZNF486                0.091   zinc finger protein 486 
ZNF506                0.090   zinc finger protein 506 isoform 1 
ZNF506                0.090   zinc finger protein 506 isoform 2 
ZNF681                0.090   zinc finger protein 681 
ZNF708                0.089   zinc finger protein 708 
ZNF595                0.089   zinc finger protein 595 
ZNF100                0.089   zinc finger protein 100 
ZNF429                0.088   zinc finger protein 429 
ZNF211                0.088   zinc finger protein 211 isoform 2 
ZNF211                0.088   zinc finger protein 211 isoform 1 
ZNF675                0.088   zinc finger protein 675 
ZNF253                0.088   zinc finger protein 253 
LOC646864             0.087   PREDICTED: similar to hCG36734 
LOC646864             0.087   PREDICTED: similar to hCG36734 
LOC646864             0.087   PREDICTED: similar to hCG36734 
ZNF98                 0.087   zinc finger protein 98 
ZNF436                0.087   zinc finger protein 436 
ZNF436                0.087   zinc finger protein 436 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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