Guide to the Human Genome
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Name: PATZ1 Sequence: fasta or formatted (687aa) NCBI GI: 14670360
Description:

POZ (BTB) and AT hook containing zinc finger 1 long C isoform

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [641aa] POZ (BTB) and AT hook containing zinc finger 1 long A isoform
alt prot [537aa] POZ (BTB) and AT hook containing zinc finger 1 short isoform
alt prot [537aa] POZ (BTB) and AT hook containing zinc finger 1 long B isoform
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         56           2
 C cysteine            3.6         25           1
 D aspartate           4.9         34           1
 E glutamate           4.8         33           3
 F phenylalanine       3.9         27           2
 G glycine            10.0         69           3
 H histidine           3.9         27           2
 I isoleucine          3.2         22           1
 K lysine              5.2         36           2
 L leucine             8.2         56           2
 M methionine          2.3         16           1
 N asparagine          3.2         22           1
 P proline             7.4         51           3
 Q glutamine           4.4         30           2
 R arginine            6.3         43           1
 S serine              9.8         67           2
 T threonine           2.8         19           1
 V valine              5.5         38           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POZ (BTB) and AT hook containing zinc finger 1 long ... 
PATZ1                 0.914   POZ (BTB) and AT hook containing zinc finger 1 long ...
PATZ1                 0.729   POZ (BTB) and AT hook containing zinc finger 1 long ...
PATZ1                 0.637   POZ (BTB) and AT hook containing zinc finger 1 short...
MAZ                   0.190   MYC-associated zinc finger protein isoform 2 
MAZ                   0.173   MYC-associated zinc finger protein isoform 1 
VEZF1                 0.154   zinc finger protein 161 
ZNF699                0.097   zinc finger protein 699 
ZNF83                 0.094   zinc finger protein 83 isoform b 
ZNF83                 0.094   zinc finger protein 83 isoform b 
ZNF493                0.093   zinc finger protein 493 isoform 1 
ZNF493                0.093   zinc finger protein 493 isoform 3 
ZNF497                0.092   zinc finger protein 497 
ZNF347                0.092   zinc finger protein 347 
ZNF83                 0.091   zinc finger protein 83 isoform a 
ZNF83                 0.091   zinc finger protein 83 isoform a 
ZNF83                 0.091   zinc finger protein 83 isoform a 
ZNF83                 0.091   zinc finger protein 83 isoform a 
ZNF83                 0.091   zinc finger protein 83 isoform a 
ZNF486                0.091   zinc finger protein 486 
ZNF814                0.091   zinc finger protein 814 
ZFP112                0.091   zinc finger protein 228 isoform 1 
ZFP112                0.091   zinc finger protein 228 isoform 2 
ZNF98                 0.091   zinc finger protein 98 
ZNF846                0.089   zinc finger protein 846 
ZNF12                 0.089   zinc finger protein 12 isoform b 
ZNF12                 0.089   zinc finger protein 12 isoform a 
ZNF778                0.088   zinc finger protein 778 
ZNF45                 0.088   zinc finger protein 45 
ZNF675                0.088   zinc finger protein 675 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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