Search of human proteins with 145275204

Search of human proteins with 145275204

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|145275204 corneal wound healing-related protein [Homo
sapiens]
         (725 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|145275204 corneal wound healing-related protein [Homo sapiens]    1468   0.0  
gi|111378393 sodium channel, voltage-gated, type VII, alpha [Hom...    32   2.1  
gi|19913414 adaptor-related protein complex 2, alpha 1 subunit i...    31   3.5  
gi|19913416 adaptor-related protein complex 2, alpha 1 subunit i...    31   3.5  
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]         31   3.5  
gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo s...    30   6.0  
gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens]       30   6.0  
gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]       30   6.0  
gi|42490753 TEA domain family member 3 [Homo sapiens]                  30   7.9  
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]                30   7.9  

>gi|145275204 corneal wound healing-related protein [Homo sapiens]
          Length = 725

 Score = 1468 bits (3801), Expect = 0.0
 Identities = 725/725 (100%), Positives = 725/725 (100%)

Query: 1   MVMKASVDDDDSGWELSMPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLFGLFEAM 60
           MVMKASVDDDDSGWELSMPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLFGLFEAM
Sbjct: 1   MVMKASVDDDDSGWELSMPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLFGLFEAM 60

Query: 61  SAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWL 120
           SAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWL
Sbjct: 61  SAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWL 120

Query: 121 EGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTY 180
           EGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTY
Sbjct: 121 EGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTY 180

Query: 181 GFKMANSVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFT 240
           GFKMANSVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFT
Sbjct: 181 GFKMANSVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFT 240

Query: 241 RVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGF 300
           RVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGF
Sbjct: 241 RVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGF 300

Query: 301 EPLVNQRLLPPTFPRYAKIIKREEMVNYFARLIDRIKTVCEVVNLTNLHCILDFFCEFSE 360
           EPLVNQRLLPPTFPRYAKIIKREEMVNYFARLIDRIKTVCEVVNLTNLHCILDFFCEFSE
Sbjct: 301 EPLVNQRLLPPTFPRYAKIIKREEMVNYFARLIDRIKTVCEVVNLTNLHCILDFFCEFSE 360

Query: 361 QSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCYLYNNHQAKDC 420
           QSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCYLYNNHQAKDC
Sbjct: 361 QSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCYLYNNHQAKDC 420

Query: 421 IDSFVTHCVRPFCSLIQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEP 480
           IDSFVTHCVRPFCSLIQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEP
Sbjct: 421 IDSFVTHCVRPFCSLIQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEP 480

Query: 481 QRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRA 540
           QRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRA
Sbjct: 481 QRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRA 540

Query: 541 DGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDG 600
           DGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDG
Sbjct: 541 DGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDG 600

Query: 601 KVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKYSPPPQSPELYVAAS 660
           KVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKYSPPPQSPELYVAAS
Sbjct: 601 KVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKYSPPPQSPELYVAAS 660

Query: 661 KHFQQAKMILENIPNPDHEVNRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSAHKYFP 720
           KHFQQAKMILENIPNPDHEVNRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSAHKYFP
Sbjct: 661 KHFQQAKMILENIPNPDHEVNRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSAHKYFP 720

Query: 721 VVKLV 725
           VVKLV
Sbjct: 721 VVKLV 725


>gi|111378393 sodium channel, voltage-gated, type VII, alpha [Homo
           sapiens]
          Length = 1682

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 491 WVLYHNLRIMIQ-YLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQMAEER 549
           W L+   R+M Q Y    +   LY+  + Y I++ +  FL+++ M++L     +   EE 
Sbjct: 341 WALFALFRLMAQDYPEVLYHQILYASGKVYMIFFVVVSFLFSFYMASLFLGILAMAYEE- 399

Query: 550 IMEEQQKGRSSKKTKKK 566
             E+Q+ G  SKK + K
Sbjct: 400 --EKQRVGEISKKIEPK 414


>gi|19913414 adaptor-related protein complex 2, alpha 1 subunit
           isoform 1 [Homo sapiens]
          Length = 977

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 357 EFSEQSPCVLSRSLLQTTFLVDNKKVF-----GTHLMQDMVKDALRSFVSPPVLS 406
           +F   SP V+    LQT   V  K+V      G  + Q +  + LR F++PP+LS
Sbjct: 787 QFQNFSPTVVHPGDLQTQLAVQTKRVAAQVDGGAQVQQVLNIECLRDFLTPPLLS 841


>gi|19913416 adaptor-related protein complex 2, alpha 1 subunit
           isoform 2 [Homo sapiens]
          Length = 955

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 357 EFSEQSPCVLSRSLLQTTFLVDNKKVF-----GTHLMQDMVKDALRSFVSPPVLS 406
           +F   SP V+    LQT   V  K+V      G  + Q +  + LR F++PP+LS
Sbjct: 765 QFQNFSPTVVHPGDLQTQLAVQTKRVAAQVDGGAQVQQVLNIECLRDFLTPPLLS 819


>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
          Length = 3639

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 13/83 (15%)

Query: 195  GMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFTRVLLTVLIAFTKKE 254
            G+LK V++ + +R +    RQ E +  +  L+  Q L +++         +V      KE
Sbjct: 1047 GLLKQVQEQVAQRAR----RQAETQARQSFLQESQQLLLWAE--------SVQAQLRSKE 1094

Query: 255  TSA-VAEAQKLMVQAADLLSAIH 276
             S  VA AQ+L+ +  DLL  IH
Sbjct: 1095 VSVDVASAQRLLREHQDLLEEIH 1117


>gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo
           sapiens]
          Length = 680

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 197 LKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFTRVLLTVLIAFTKKETS 256
           L+D  D+  RR + TR +   E D EV     +  A+ S+ + +        AF+  +  
Sbjct: 493 LEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEES------ASAFSADDLM 546

Query: 257 AVAEAQKLMVQAADLLSAIHNS------LHHGIQAQNDTTKGDHPIMMGFEPLVNQRLLP 310
           ++  A+++   + D +SA  N          G + QN  ++G       F+    Q    
Sbjct: 547 SIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRAFKSTRQQPSRN 606

Query: 311 PTFPRYAKIIKREE 324
            T   Y+++I+ +E
Sbjct: 607 VTTKNYSEVIEVDE 620


>gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens]
          Length = 1191

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 32  ITQDFEEACRELKLGEL-LHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAI 90
           I +++E  C+ L+  ++ L D+   L EA   IE     + A  + +++  K  +  +A+
Sbjct: 617 IQEEYEGICKLLQAAKVALQDREKKLAEAYEQIEKDLTLLGATAVEDRLQEKAADTIEAL 676

Query: 91  KDGTIKIKDLTLPELIGIMDTCFCC 115
           +   IK+  LT  ++     TC+ C
Sbjct: 677 QKAGIKVWVLTGDKMETAAATCYAC 701


>gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]
          Length = 1134

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 32  ITQDFEEACRELKLGEL-LHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAI 90
           I +++E  C+ L+  ++ L D+   L EA   IE     + A  + +++  K  +  +A+
Sbjct: 617 IQEEYEGICKLLQAAKVALQDREKKLAEAYEQIEKDLTLLGATAVEDRLQEKAADTIEAL 676

Query: 91  KDGTIKIKDLTLPELIGIMDTCFCC 115
           +   IK+  LT  ++     TC+ C
Sbjct: 677 QKAGIKVWVLTGDKMETAAATCYAC 701


>gi|42490753 TEA domain family member 3 [Homo sapiens]
          Length = 435

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 644 NKYSPPPQSPELYVAASKHFQQAKMILENIPNPDHEVNRILKVAKP 689
           NK+SPP   P+   + S  F  +  +L   P P  ++    + A P
Sbjct: 142 NKFSPPSPLPQAVFSTSSRFWSSPPLLGQQPGPSQDIKPFAQPAYP 187


>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
          Length = 895

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 27/131 (20%)

Query: 542 GSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVA------ 595
           G Q   E + E++++   + K+K ++KVRP   +I +   YQ +    FK          
Sbjct: 532 GIQEMREALQEKEEQ--KTMKSKMREKVRPKMGKIDID--YQKLHDAFFKWQTKPKLTIH 587

Query: 596 ---------FDMDGKVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKY 646
                    F+   K +KP    D  ++       P N+   PPP        +  + +Y
Sbjct: 588 GDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGP-NAHKVPPPW-------LIAMQRY 639

Query: 647 SPPPQSPELYV 657
            PPP  P L +
Sbjct: 640 GPPPSYPNLKI 650


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,934,582
Number of Sequences: 37866
Number of extensions: 1152191
Number of successful extensions: 3721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3718
Number of HSP's gapped (non-prelim): 12
length of query: 725
length of database: 18,247,518
effective HSP length: 110
effective length of query: 615
effective length of database: 14,082,258
effective search space: 8660588670
effective search space used: 8660588670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.