BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|109638743 hypothetical protein LOC83723 [Homo sapiens] (274 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|109638743 hypothetical protein LOC83723 [Homo sapiens] 574 e-164 gi|13376162 family with sequence similarity 57, member A [Homo s... 254 7e-68 gi|31083053 ceroid-lipofuscinosis, neuronal 8 [Homo sapiens] 38 0.008 gi|239752881 PREDICTED: hypothetical protein [Homo sapiens] 29 3.9 gi|239747434 PREDICTED: hypothetical protein [Homo sapiens] 29 3.9 gi|239741258 PREDICTED: hypothetical protein XP_002342146 [Homo ... 29 3.9 gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens] 29 3.9 gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens] 29 3.9 gi|237874289 TLC domain containing 1 isoform 2 [Homo sapiens] 29 5.1 gi|19923999 TLC domain containing 1 isoform 1 [Homo sapiens] 29 5.1 gi|157388941 hypothetical protein LOC55071 [Homo sapiens] 29 5.1 gi|90903231 huntingtin [Homo sapiens] 28 6.6 gi|148746181 testis enhanced gene transcript (BAX inhibitor 1) i... 28 6.6 gi|148746209 testis enhanced gene transcript (BAX inhibitor 1) i... 28 6.6 gi|4507005 solute carrier family 22 member 5 [Homo sapiens] 28 6.6 gi|85797660 limkain b1 [Homo sapiens] 28 6.6 >gi|109638743 hypothetical protein LOC83723 [Homo sapiens] Length = 274 Score = 574 bits (1480), Expect = e-164 Identities = 274/274 (100%), Positives = 274/274 (100%) Query: 1 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS 60 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS Sbjct: 1 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS 60 Query: 61 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWA 120 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWA Sbjct: 61 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWA 120 Query: 121 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ 180 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ Sbjct: 121 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ 180 Query: 181 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL 240 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL Sbjct: 181 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL 240 Query: 241 LLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD 274 LLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD Sbjct: 241 LLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD 274 >gi|13376162 family with sequence similarity 57, member A [Homo sapiens] Length = 257 Score = 254 bits (648), Expect = 7e-68 Identities = 126/260 (48%), Positives = 169/260 (65%), Gaps = 12/260 (4%) Query: 1 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS 60 ML + G + FPGLF L L+R Q W D V++S RLVSSV A++A+ +G ++ Sbjct: 1 MLLTLAGGALFFPGLFALCTWALRR-SQPGWSRTDCVMISTRLVSSVHAVLATGSGIVII 59 Query: 61 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWA 120 SC +I +HWL+ Y F +PY IYD YAM+LC W + + + RAP T Sbjct: 60 RSCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQN--------RAPSLT-- 109 Query: 121 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ 180 R +L + LM+ HHA ++ V P++ R GDFF+GC+ AE+STPFV LG++LIQ Sbjct: 110 -LRNFLSRNRLMITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQ 168 Query: 181 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL 240 KQQHTLL+KVNG L L +FL CR+LLFP++YW+YGR GL LL VP +IP + N+ A Sbjct: 169 LKQQHTLLYKVNGILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVANAF 228 Query: 241 LLAPQLYWFFLICRGACRLF 260 L+APQ+YWF L+CR A RLF Sbjct: 229 LVAPQIYWFCLLCRKAVRLF 248 >gi|31083053 ceroid-lipofuscinosis, neuronal 8 [Homo sapiens] Length = 286 Score = 38.1 bits (87), Expect = 0.008 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 129 EFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLL 188 + +V+HH L L + G + L+ E+STPF C+ +L++ +L Sbjct: 132 DLFLVIHHLFAFLGF--LGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLKAGWSESLF 189 Query: 189 HKVNGALMLLSFLCCRVLLFPYLYW 213 K+N LM+ F CR++L +++W Sbjct: 190 WKLNQWLMIHMF-HCRMVLTYHMWW 213 >gi|239752881 PREDICTED: hypothetical protein [Homo sapiens] Length = 254 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 99 KHQVKGHGGDDGAARAPGSTWAIARGYLHKEFLMVLH---HAAMVLVC 143 +H V+ HGGD+ A PG + L + LH H L+C Sbjct: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRLAHRVQPLLC 137 >gi|239747434 PREDICTED: hypothetical protein [Homo sapiens] Length = 254 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 99 KHQVKGHGGDDGAARAPGSTWAIARGYLHKEFLMVLH---HAAMVLVC 143 +H V+ HGGD+ A PG + L + LH H L+C Sbjct: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRLAHRVQPLLC 137 >gi|239741258 PREDICTED: hypothetical protein XP_002342146 [Homo sapiens] Length = 254 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 99 KHQVKGHGGDDGAARAPGSTWAIARGYLHKEFLMVLH---HAAMVLVC 143 +H V+ HGGD+ A PG + L + LH H L+C Sbjct: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRLAHRVQPLLC 137 >gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens] Length = 392 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 195 LMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIP 231 L L+FL C LL LY A G A P VPLA+P Sbjct: 217 LRALAFLACAFLLTTALYGASGHFA--PGTTVPLALP 251 >gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens] Length = 642 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 195 LMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIP 231 L L+FL C LL LY A G A P VPLA+P Sbjct: 217 LRALAFLACAFLLTTALYGASGHFA--PGTTVPLALP 251 >gi|237874289 TLC domain containing 1 isoform 2 [Homo sapiens] Length = 200 Score = 28.9 bits (63), Expect = 5.1 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 10/130 (7%) Query: 121 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ 180 +A G + ++HH M + F + W G L L+ EVS F+ + ++ Sbjct: 56 VASGQTRASWEYLVHHV-MAMGAFFSGIFWSSFVGGGVL--TLLVEVSNIFLTIRMMMKI 112 Query: 181 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL 240 Q LL++VN + L+ + R+ YL + R+ L L LG L Sbjct: 113 SNAQDHLLYRVNKYVNLVMYFLFRLAPQAYLTHFFLRYVNQRTLGTFL-------LGILL 165 Query: 241 LLAPQLYWFF 250 +L + +F Sbjct: 166 MLDVMIIIYF 175 >gi|19923999 TLC domain containing 1 isoform 1 [Homo sapiens] Length = 247 Score = 28.9 bits (63), Expect = 5.1 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 10/130 (7%) Query: 121 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ 180 +A G + ++HH M + F + W G L L+ EVS F+ + ++ Sbjct: 103 VASGQTRASWEYLVHHV-MAMGAFFSGIFWSSFVGGGVL--TLLVEVSNIFLTIRMMMKI 159 Query: 181 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL 240 Q LL++VN + L+ + R+ YL + R+ L L LG L Sbjct: 160 SNAQDHLLYRVNKYVNLVMYFLFRLAPQAYLTHFFLRYVNQRTLGTFL-------LGILL 212 Query: 241 LLAPQLYWFF 250 +L + +F Sbjct: 213 MLDVMIIIYF 222 >gi|157388941 hypothetical protein LOC55071 [Homo sapiens] Length = 194 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 101 QVKGHGGDDGAARA--PGSTWAIARGYLHKEF 130 ++ G GGDDGA RA P W +A ++EF Sbjct: 116 RLPGGGGDDGAGRAGPPRGDWGVASRQHNEEF 147 >gi|90903231 huntingtin [Homo sapiens] Length = 3144 Score = 28.5 bits (62), Expect = 6.6 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 198 LSFLCCRVLL-----FPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAALLLAPQL--YWF 249 L+F CC L FP W+ G H G+P L+ +G A ++ L WF Sbjct: 1023 LTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILTLLSSAWF 1081 >gi|148746181 testis enhanced gene transcript (BAX inhibitor 1) isoform 2 [Homo sapiens] Length = 295 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 138 AMVLVCFPLSVVWRQGKGDFFLGCMLMAEVS 168 AM+ CF LS ++ + + FLG +LM+ +S Sbjct: 180 AMIFTCFTLSALYARRRSYLFLGGILMSALS 210 >gi|148746209 testis enhanced gene transcript (BAX inhibitor 1) isoform 1 [Homo sapiens] Length = 237 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 138 AMVLVCFPLSVVWRQGKGDFFLGCMLMAEVS 168 AM+ CF LS ++ + + FLG +LM+ +S Sbjct: 122 AMIFTCFTLSALYARRRSYLFLGGILMSALS 152 >gi|4507005 solute carrier family 22 member 5 [Homo sapiens] Length = 557 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/38 (39%), Positives = 19/38 (50%) Query: 144 FPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQY 181 F LS+ GD F+ C L A V P L +L+QY Sbjct: 359 FGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQY 396 >gi|85797660 limkain b1 [Homo sapiens] Length = 1742 Score = 28.5 bits (62), Expect = 6.6 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 15/99 (15%) Query: 170 PFVCLGKILIQYKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLA 229 PFV L + Q H+LL G + LLSF C + F L G+PL Sbjct: 998 PFVILS-LKTFAPQVHSLLQTHEGTVPLLSFPDCYIAEFGDLEVVQENQGGVPLEHFITC 1056 Query: 230 IPAHVNLGAALLLAPQLYWFFLICRGACRLFWPRSRPPP 268 +P VN+ A G + W ++PPP Sbjct: 1057 VPG-VNIATAQ-------------NGIKVVKWIHNKPPP 1081 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.330 0.142 0.479 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,041,486 Number of Sequences: 37866 Number of extensions: 459886 Number of successful extensions: 1251 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1240 Number of HSP's gapped (non-prelim): 16 length of query: 274 length of database: 18,247,518 effective HSP length: 101 effective length of query: 173 effective length of database: 14,423,052 effective search space: 2495187996 effective search space used: 2495187996 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.