Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM57B Sequence: fasta or formatted (274aa) NCBI GI: 109638743
Description:

hypothetical protein LOC83723

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         30           2
 C cysteine            3.6         10           2
 D aspartate           2.9          8           2
 E glutamate           1.5          4           2
 F phenylalanine       5.5         15           2
 G glycine             6.9         19           2
 H histidine           4.7         13           2
 I isoleucine          4.4         12           2
 K lysine              3.3          9           1
 L leucine            14.2         39           3
 M methionine          3.3          9           1
 N asparagine          1.1          3           1
 P proline             5.8         16           3
 Q glutamine           4.7         13           2
 R arginine            4.4         12           1
 S serine              5.1         14           2
 T threonine           2.9          8           1
 V valine              7.7         21           2
 W tryptophan          2.9          8           1
 Y tyrosine            4.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC83723 
FAM57A                0.417   family with sequence similarity 57, member A 
CLN8                  0.024   ceroid-lipofuscinosis, neuronal 8 
LOC100293547          0.007   PREDICTED: hypothetical protein 
LOC100132733          0.007   PREDICTED: hypothetical protein 
LOC100287935          0.007   PREDICTED: hypothetical protein XP_002342146 
TMEM201               0.007   transmembrane protein 201 isoform 2 
TMEM201               0.007   transmembrane protein 201 isoform 1 
TLCD1                 0.007   TLC domain containing 1 isoform 2 
TLCD1                 0.007   TLC domain containing 1 isoform 1 
C9orf40               0.007   hypothetical protein LOC55071 
HTT                   0.005   huntingtin 
TMBIM6                0.005   testis enhanced gene transcript (BAX inhibitor 1) i...
TMBIM6                0.005   testis enhanced gene transcript (BAX inhibitor 1) i...
SLC22A5               0.005   solute carrier family 22 member 5 
KIAA0430              0.005   limkain b1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press