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Search of human proteins with 14270502
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14270502 protocadherin gamma subfamily B, 6 isoform 2
precursor [Homo sapiens]
(820 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1622 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1595 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1197 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1197 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1123 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1123 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1074 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1073 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1055 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1050 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1039 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1038 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 984 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 983 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 690 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 690 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 686 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 686 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 684 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 684 0.0
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 683 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 683 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 671 0.0
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs... 671 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 666 0.0
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur... 666 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 666 0.0
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs... 666 0.0
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 665 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 665 0.0
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1622 bits (4201), Expect = 0.0
Identities = 820/820 (100%), Positives = 820/820 (100%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTSVSFSFLCVIYLIVY 820
CSVSPGALIPPHGGEDLTSHPETLTSVSFSFLCVIYLIVY
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTSVSFSFLCVIYLIVY 820
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1595 bits (4130), Expect = 0.0
Identities = 806/806 (100%), Positives = 806/806 (100%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTS 806
CSVSPGALIPPHGGEDLTSHPETLTS
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTS 806
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1197 bits (3096), Expect = 0.0
Identities = 602/767 (78%), Positives = 666/767 (86%), Gaps = 1/767 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTL EPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSAR+LRVSAEKLHFSVDA+SGDLLVK+RIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQF K EI+LEI ES S G L+ A DPDI++NS+ Y+++ N YFSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DGGKYPEL L+K LDRE Q +H L+LTALDGGDPPRS TA I I V D NDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SL E++PPG+ +L+V ATDQDEG+N+EI Y F A +H+FSLD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I Q DFE+VERYT+ +EAKD G LST+CKVI+E++DENDNSPEIIITSLSDQI+E+S
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPG+VVALFKTRD D G NGEVRC++ +PFKI+SSSNNYYKLVTD ALDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS++ITL++ D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
GLNG +SYS++ASDLE +SSYVSVSAQSGVVFAQRAFDHEQLR F LTLQARD GSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FD VPR+A+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD SD P SD QAE+QFYLVVALALISVLFLLAVILAIALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCI-AHTGTKEFNF 766
P DCF LC KSGPV PPNYSEGTLPY+YN C+ EFNF
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNF 767
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1197 bits (3096), Expect = 0.0
Identities = 602/767 (78%), Positives = 666/767 (86%), Gaps = 1/767 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTL EPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSAR+LRVSAEKLHFSVDA+SGDLLVK+RIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQF K EI+LEI ES S G L+ A DPDI++NS+ Y+++ N YFSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DGGKYPEL L+K LDRE Q +H L+LTALDGGDPPRS TA I I V D NDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SL E++PPG+ +L+V ATDQDEG+N+EI Y F A +H+FSLD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I Q DFE+VERYT+ +EAKD G LST+CKVI+E++DENDNSPEIIITSLSDQI+E+S
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPG+VVALFKTRD D G NGEVRC++ +PFKI+SSSNNYYKLVTD ALDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS++ITL++ D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
GLNG +SYS++ASDLE +SSYVSVSAQSGVVFAQRAFDHEQLR F LTLQARD GSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FD VPR+A+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD SD P SD QAE+QFYLVVALALISVLFLLAVILAIALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCI-AHTGTKEFNF 766
P DCF LC KSGPV PPNYSEGTLPY+YN C+ EFNF
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNF 767
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1124 bits (2906), Expect = 0.0
Identities = 566/807 (70%), Positives = 648/807 (80%), Gaps = 4/807 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTSV 807
C S GAL P + TSHPE ++ +
Sbjct: 777 CGDSSGALFPLCNSSESTSHPELVSFI 803
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1123 bits (2904), Expect = 0.0
Identities = 566/802 (70%), Positives = 645/802 (80%), Gaps = 4/802 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
Query: 781 CSVSPGALIPPHGGEDLTSHPE 802
C S GAL P + TSHPE
Sbjct: 777 CGDSSGALFPLCNSSESTSHPE 798
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1074 bits (2778), Expect = 0.0
Identities = 546/811 (67%), Positives = 641/811 (79%), Gaps = 2/811 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L A D DI N++++Y+++ + +FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + SDG KYPE+ L+ LDRE+Q+S+ L LTALD G PP S+TA I + V D NDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SLSEN+ PG+ VLQVTATDQDEGVNAEI + F +Q T+ F L+ TG
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+V+ Y++ +EA+DGGG+ QC V +E++DENDN+PE+I SL + I+E++
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G +AL K RD D NGEV C +E D+PFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
T+ ATDRGKPPLSSS SITL++ D+NDNAPVF Q+SY+VHVAENNPPGASI+QV ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY I+ASDLE +SSYVS+SA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLV DRNDNAPRVLYPALGPDGSA FDMVP +AEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRP SD QAELQFYLVVALALISVLFL+A+ILAIALRLRRS S
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA+W CF PGLCVKS VVPPNYSEGTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 778
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTSVSFSF 811
C S GAL P +LTSH + + + F
Sbjct: 779 CGDSSGALFPLCNSSELTSHQQAPPNTDWRF 809
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1073 bits (2774), Expect = 0.0
Identities = 545/800 (68%), Positives = 637/800 (79%), Gaps = 2/800 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L A D DI N++++Y+++ + +FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + SDG KYPE+ L+ LDRE+Q+S+ L LTALD G PP S+TA I + V D NDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SLSEN+ PG+ VLQVTATDQDEGVNAEI + F +Q T+ F L+ TG
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+V+ Y++ +EA+DGGG+ QC V +E++DENDN+PE+I SL + I+E++
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G +AL K RD D NGEV C +E D+PFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
T+ ATDRGKPPLSSS SITL++ D+NDNAPVF Q+SY+VHVAENNPPGASI+QV ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY I+ASDLE +SSYVS+SA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLV DRNDNAPRVLYPALGPDGSA FDMVP +AEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRP SD QAELQFYLVVALALISVLFL+A+ILAIALRLRRS S
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA+W CF PGLCVKS VVPPNYSEGTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 778
Query: 781 CSVSPGALIPPHGGEDLTSH 800
C S GAL P +LTSH
Sbjct: 779 CGDSSGALFPLCNSSELTSH 798
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1055 bits (2728), Expect = 0.0
Identities = 540/797 (67%), Positives = 623/797 (78%), Gaps = 1/797 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V+ ESGDLLV +RIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
+ +I+L+I ES GT LDPA D D+ NS++ Y +N N YF L + DG KYPEL
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
L+ LDREE H L+LTA+DGGDPP+S T I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+PPG VLQVTATD+DEG+NAEI Y F + + KH F+L+EKTG I DFE
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
YT+ +EAKD G L+ C + +EILD+ND +PE+I+TS+S + E+SPPG V+AL KTRD
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NGEV C + + F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
S +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DL+P + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDR SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S WDCF PGL K
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
GP V PNYSEGTLPYSYNLC+A K EFNFL + L +D+VC + HG
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
Query: 794 GEDLTSHPETLTSVSFS 810
+ +T+ VSF+
Sbjct: 795 AAGVPFASDTILKVSFN 811
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1050 bits (2714), Expect = 0.0
Identities = 537/791 (67%), Positives = 619/791 (78%), Gaps = 1/791 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V+ ESGDLLV +RIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
+ +I+L+I ES GT LDPA D D+ NS++ Y +N N YF L + DG KYPEL
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
L+ LDREE H L+LTA+DGGDPP+S T I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+PPG VLQVTATD+DEG+NAEI Y F + + KH F+L+EKTG I DFE
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
YT+ +EAKD G L+ C + +EILD+ND +PE+I+TS+S + E+SPPG V+AL KTRD
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NGEV C + + F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
S +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DL+P + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDR SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S WDCF PGL K
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
GP V PNYSEGTLPYSYNLC+A K EFNFL + L +D+VC + HG
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
Query: 794 GEDLTSHPETL 804
+ +T+
Sbjct: 795 AAGVPFASDTI 805
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1039 bits (2687), Expect = 0.0
Identities = 545/796 (68%), Positives = 621/796 (78%), Gaps = 3/796 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVLFP LL LF +S+ IRY+IPEELA GS VG LAKDLGLSV ++ RKLRVSAE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V ESGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
K I LEI ESA G + SLD A D D+ NS+K Y IN N YFSL + + DG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
LEK LDRE Q SH LILTA+DGGDPP S T HI I V D NDN PVFS++ YR+SL EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+P G+ VL+V ATDQDEG+NAEI Y F ++ ST +F+L+ TG I N + DFE+ R
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Y + VEAKDGG + C V IEI+DENDN+PE+ S S+QI E+S G V+AL K RD
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NG V C + ++PFK+ S+S NYYKLV GAL+REQT +YNVTI+ATD+GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
SITL+++DINDNAPVF Q SYVVHV+ENNPPGASIAQVSASDPDLG NG +SYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DLEP + SYVSVS QSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDRP SDPQ ELQFYLVVALALISVLFLLAVILAIALRLRRS S T CF GLC K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 SGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
SGP VPPN+SEGTLPYSYNLCIA H+ EFN L + + +D++C + +
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
Query: 794 GEDLTSHPETLTSVSF 809
+ P + VSF
Sbjct: 791 DHKIAYDPSLSSHVSF 806
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1038 bits (2683), Expect = 0.0
Identities = 541/768 (70%), Positives = 613/768 (79%), Gaps = 3/768 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVLFP LL LF +S+ IRY+IPEELA GS VG LAKDLGLSV ++ RKLRVSAE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V ESGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
K I LEI ESA G + SLD A D D+ NS+K Y IN N YFSL + + DG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
LEK LDRE Q SH LILTA+DGGDPP S T HI I V D NDN PVFS++ YR+SL EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+P G+ VL+V ATDQDEG+NAEI Y F ++ ST +F+L+ TG I N + DFE+ R
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Y + VEAKDGG + C V IEI+DENDN+PE+ S S+QI E+S G V+AL K RD
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NG V C + ++PFK+ S+S NYYKLV GAL+REQT +YNVTI+ATD+GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
SITL+++DINDNAPVF Q SYVVHV+ENNPPGASIAQVSASDPDLG NG +SYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DLEP + SYVSVS QSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDRP SDPQ ELQFYLVVALALISVLFLLAVILAIALRLRRS S T CF GLC K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 SGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDMVC 781
SGP VPPN+SEGTLPYSYNLCIA H+ EFN L + + +D++C
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLC 778
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 984 bits (2545), Expect = 0.0
Identities = 511/810 (63%), Positives = 606/810 (74%), Gaps = 3/810 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 780 VCSVSPGALIPPHGGEDLTSHPETLTSVSF 809
+C + + ++ S+ L VSF
Sbjct: 781 LC--DEASWFESNDNPEMPSNSGNLQKVSF 808
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 983 bits (2541), Expect = 0.0
Identities = 506/782 (64%), Positives = 596/782 (76%), Gaps = 1/782 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 780 VC 781
+C
Sbjct: 781 LC 782
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 690 bits (1781), Expect = 0.0
Identities = 363/714 (50%), Positives = 490/714 (68%), Gaps = 3/714 (0%)
Query: 7 QRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKL 66
QR QVL LL + + IRYSIPEEL KGS VGN+ KDLGL +++ +
Sbjct: 5 QRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGV 64
Query: 67 R-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIE 124
R VS ++ FS++ +G L+ RIDRE++C + RC + +VE+ LN++ V V I
Sbjct: 65 RIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIV 124
Query: 125 DVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRV 184
D+ND+ P+F K+E+ ++I E+A+ +R L DPD+ +NS++ +K++ N +FS+ V+
Sbjct: 125 DINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQS 184
Query: 185 NSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSR 244
+ G KYPEL LE LDRE + + L+LTA+DGGDP RS+ A I ++V D NDN P+F++
Sbjct: 185 EAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQ 244
Query: 245 DEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNN 304
YR+S+ ENLP G+PVL VTATDQDEGV+ E+ Y F + +F L+ TG I +
Sbjct: 245 PVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTS 304
Query: 305 QSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGM 364
+ D+ED Y + VEA+DG GL + KV+I ILD NDN PE+++TS S I E++PPG
Sbjct: 305 ANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGT 364
Query: 365 VVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVA 424
V+ALF+ D D G NG V C+I +PF++ S NYY+LVT+ ALDRE+ YN+T+ A
Sbjct: 365 VIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTA 424
Query: 425 TDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLN 484
TD+G PPLS+ I+L VAD NDN P F +SY V+V ENNP GASI V+A DPD+ N
Sbjct: 425 TDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQN 484
Query: 485 GHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSA 544
+SYS+ L+ +SSYVS+++ +G+++A R+FD+EQLR L + A D G P LS+
Sbjct: 485 AQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSS 544
Query: 545 NVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWL 604
NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWL
Sbjct: 545 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWL 604
Query: 605 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 664
SY +L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +
Sbjct: 605 SYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 664
Query: 665 ADNLQEILPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRR 717
AD + +IL DL S P ++L YLVVA+A +S +FL VI+ +ALRL+R
Sbjct: 665 ADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQR 718
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 690 bits (1781), Expect = 0.0
Identities = 363/714 (50%), Positives = 490/714 (68%), Gaps = 3/714 (0%)
Query: 7 QRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKL 66
QR QVL LL + + IRYSIPEEL KGS VGN+ KDLGL +++ +
Sbjct: 5 QRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGV 64
Query: 67 R-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIE 124
R VS ++ FS++ +G L+ RIDRE++C + RC + +VE+ LN++ V V I
Sbjct: 65 RIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIV 124
Query: 125 DVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRV 184
D+ND+ P+F K+E+ ++I E+A+ +R L DPD+ +NS++ +K++ N +FS+ V+
Sbjct: 125 DINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQS 184
Query: 185 NSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSR 244
+ G KYPEL LE LDRE + + L+LTA+DGGDP RS+ A I ++V D NDN P+F++
Sbjct: 185 EAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQ 244
Query: 245 DEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNN 304
YR+S+ ENLP G+PVL VTATDQDEGV+ E+ Y F + +F L+ TG I +
Sbjct: 245 PVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTS 304
Query: 305 QSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGM 364
+ D+ED Y + VEA+DG GL + KV+I ILD NDN PE+++TS S I E++PPG
Sbjct: 305 ANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGT 364
Query: 365 VVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVA 424
V+ALF+ D D G NG V C+I +PF++ S NYY+LVT+ ALDRE+ YN+T+ A
Sbjct: 365 VIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTA 424
Query: 425 TDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLN 484
TD+G PPLS+ I+L VAD NDN P F +SY V+V ENNP GASI V+A DPD+ N
Sbjct: 425 TDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQN 484
Query: 485 GHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSA 544
+SYS+ L+ +SSYVS+++ +G+++A R+FD+EQLR L + A D G P LS+
Sbjct: 485 AQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSS 544
Query: 545 NVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWL 604
NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWL
Sbjct: 545 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWL 604
Query: 605 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 664
SY +L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +
Sbjct: 605 SYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 664
Query: 665 ADNLQEILPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRR 717
AD + +IL DL S P ++L YLVVA+A +S +FL VI+ +ALRL+R
Sbjct: 665 ADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQR 718
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 686 bits (1771), Expect = 0.0
Identities = 355/706 (50%), Positives = 483/706 (68%), Gaps = 5/706 (0%)
Query: 16 VLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRV--SAEKL 73
VL +LL + T IRYS+PEEL KGS VG++++DLGL +++ R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 HFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQF 133
F+++ SG L+ RIDRE++C +C+L L+ ++E+ + I+ V V + D+ND+AP F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 DKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPE 193
+ E+ ++I E+A+ R L A DPDI NS++ Y+++ N +FSL+V+ +DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSE 253
L L++ LDREE+ +H L+LTA DGGDP R+ TA I + V D NDN P F++ EYR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVE 313
NL G+ +L V ATD DEGVNAE+ Y FR +F LD +G I D E+
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 RYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRD 373
Y MEV+A D G S + KV+I +LD NDN+PE+++TSL+ + ENSP G ++AL D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 LDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLS 433
D NG+V C I+ ++PFK+ S NYY LVTD LDREQ P YN+T+ ATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVA 493
+ I+L VAD NDN PVF Q SY ++ ENNP G S+ V+A DPD N I+YS+
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVG 553
+ ++ ++SSYVS+++ +GV++A +FD+EQ R + + ARD+G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILP 673
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLS--DRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRR 717
DL + P S+ ++L YLVVA+A +S +FL VIL +ALRLRR
Sbjct: 674 DLGSLESPANSE-TSDLTLYLVVAVAAVSCVFLAFVILLLALRLRR 718
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 686 bits (1771), Expect = 0.0
Identities = 355/706 (50%), Positives = 483/706 (68%), Gaps = 5/706 (0%)
Query: 16 VLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRV--SAEKL 73
VL +LL + T IRYS+PEEL KGS VG++++DLGL +++ R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 HFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQF 133
F+++ SG L+ RIDRE++C +C+L L+ ++E+ + I+ V V + D+ND+AP F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 DKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPE 193
+ E+ ++I E+A+ R L A DPDI NS++ Y+++ N +FSL+V+ +DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSE 253
L L++ LDREE+ +H L+LTA DGGDP R+ TA I + V D NDN P F++ EYR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVE 313
NL G+ +L V ATD DEGVNAE+ Y FR +F LD +G I D E+
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 RYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRD 373
Y MEV+A D G S + KV+I +LD NDN+PE+++TSL+ + ENSP G ++AL D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 LDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLS 433
D NG+V C I+ ++PFK+ S NYY LVTD LDREQ P YN+T+ ATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVA 493
+ I+L VAD NDN PVF Q SY ++ ENNP G S+ V+A DPD N I+YS+
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVG 553
+ ++ ++SSYVS+++ +GV++A +FD+EQ R + + ARD+G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILP 673
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLS--DRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRR 717
DL + P S+ ++L YLVVA+A +S +FL VIL +ALRLRR
Sbjct: 674 DLGSLESPANSE-TSDLTLYLVVAVAAVSCVFLAFVILLLALRLRR 718
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 684 bits (1764), Expect = 0.0
Identities = 357/706 (50%), Positives = 479/706 (67%), Gaps = 8/706 (1%)
Query: 20 LLLP-LFYPTLSEP----IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
LLLP + TL EP IRYS+PEEL KGS VGN+AKDLGL +++ R +R+ +
Sbjct: 13 LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72
Query: 75 --FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQ 132
F+++ SG L+ RIDRE++C + C + +VEN + I+ V V I D+ND+ P+
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132
Query: 133 FDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYP 192
F +E+ +++ E+A+AGTRL L A D D+ +NS++ Y+++SN +FSL V +DG KYP
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192
Query: 193 ELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLS 252
EL LE+ LDRE++ H L+LTALDGGDP S T HI ++V D NDN P+F+ EY +S+
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 253 ENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDV 312
EN+P G+ +L +TATD DEG+N ++ Y FR+ + F LD G I QS D+E+
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312
Query: 313 ERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTR 372
Y MEV A+DGG L KV++ + D NDN+PE+I+TSL+ I E+ PG V+ALF
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372
Query: 373 DLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPL 432
D D G NGE+ C+I ++PFK+ S +NYY L+T LDRE+T +YN+T+ D G PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432
Query: 433 SSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIV 492
S+ I L VAD+NDN P F Q SY V ENNP G SI V+A DPD G N ++YS+
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492
Query: 493 ASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLV 552
+ +SSYVS+++ +GV++A R+FD+EQLR L + A D G+P LS+NVSL + V
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552
Query: 553 GDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
D+NDN P +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEIL 672
EPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ + AD + +IL
Sbjct: 613 EPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDIL 672
Query: 673 PDLSDRPVLSDPQ-AELQFYLVVALALISVLFLLAVILAIALRLRR 717
DL DP+ +L YLVVA+A +S +FL VI+ + LRLRR
Sbjct: 673 ADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRR 718
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 684 bits (1764), Expect = 0.0
Identities = 357/706 (50%), Positives = 479/706 (67%), Gaps = 8/706 (1%)
Query: 20 LLLP-LFYPTLSEP----IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
LLLP + TL EP IRYS+PEEL KGS VGN+AKDLGL +++ R +R+ +
Sbjct: 13 LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72
Query: 75 --FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQ 132
F+++ SG L+ RIDRE++C + C + +VEN + I+ V V I D+ND+ P+
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132
Query: 133 FDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYP 192
F +E+ +++ E+A+AGTRL L A D D+ +NS++ Y+++SN +FSL V +DG KYP
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192
Query: 193 ELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLS 252
EL LE+ LDRE++ H L+LTALDGGDP S T HI ++V D NDN P+F+ EY +S+
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 253 ENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDV 312
EN+P G+ +L +TATD DEG+N ++ Y FR+ + F LD G I QS D+E+
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312
Query: 313 ERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTR 372
Y MEV A+DGG L KV++ + D NDN+PE+I+TSL+ I E+ PG V+ALF
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372
Query: 373 DLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPL 432
D D G NGE+ C+I ++PFK+ S +NYY L+T LDRE+T +YN+T+ D G PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432
Query: 433 SSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIV 492
S+ I L VAD+NDN P F Q SY V ENNP G SI V+A DPD G N ++YS+
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492
Query: 493 ASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLV 552
+ +SSYVS+++ +GV++A R+FD+EQLR L + A D G+P LS+NVSL + V
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552
Query: 553 GDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
D+NDN P +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEIL 672
EPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ + AD + +IL
Sbjct: 613 EPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDIL 672
Query: 673 PDLSDRPVLSDPQ-AELQFYLVVALALISVLFLLAVILAIALRLRR 717
DL DP+ +L YLVVA+A +S +FL VI+ + LRLRR
Sbjct: 673 ADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRR 718
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 683 bits (1763), Expect = 0.0
Identities = 360/719 (50%), Positives = 487/719 (67%), Gaps = 8/719 (1%)
Query: 6 AQRRRAGPRQVLFPLLLPLFYPTL----SEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
A R + G R L LLL +F TL + IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 62 SARKLR-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHV 119
+ R +R VS K F+V+ SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 IVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFS 179
V I D+ND+AP F + E+ +++ E A G R +L A DPD+ +NS++ Y+++ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNP 239
L +R +DG K PEL LE LDRE++ +H L+LTALDGGDP R I + V D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTG 299
P+F++ YR+S+ EN+ G+ VL V ATD DEG+N E+ Y FR+ +F LD +TG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 MIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILEN 359
++ S DFE Y ME++ +DGGGL T ++I ++D NDN+PEI ITS + ILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYN 419
SPPG V+AL +D D G NG+V C I +PFK+ + NYYKL+T LDRE YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 VTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDP 479
+T+ ATD+G PPLS+ + L VAD NDN PVF +SY ++ ENNP GASI V+A DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGS 539
D N ++YS+ ++ + +SSYVS+++ +GV++A ++FD+EQ R L + ARD G
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSG 599
P LS+NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 659
NAWLSY +L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT T
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
Query: 660 LHLVFADNLQEILPDLSDRPVLSDPQ-AELQFYLVVALALISVLFLLAVILAIALRLRR 717
L + AD++ E+L DL L++ + ++L YLVVA+A +S +FL+ VI+ +ALRL R
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWR 719
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 683 bits (1763), Expect = 0.0
Identities = 360/719 (50%), Positives = 487/719 (67%), Gaps = 8/719 (1%)
Query: 6 AQRRRAGPRQVLFPLLLPLFYPTL----SEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
A R + G R L LLL +F TL + IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 62 SARKLR-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHV 119
+ R +R VS K F+V+ SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 IVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFS 179
V I D+ND+AP F + E+ +++ E A G R +L A DPD+ +NS++ Y+++ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNP 239
L +R +DG K PEL LE LDRE++ +H L+LTALDGGDP R I + V D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTG 299
P+F++ YR+S+ EN+ G+ VL V ATD DEG+N E+ Y FR+ +F LD +TG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 MIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILEN 359
++ S DFE Y ME++ +DGGGL T ++I ++D NDN+PEI ITS + ILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYN 419
SPPG V+AL +D D G NG+V C I +PFK+ + NYYKL+T LDRE YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 VTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDP 479
+T+ ATD+G PPLS+ + L VAD NDN PVF +SY ++ ENNP GASI V+A DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGS 539
D N ++YS+ ++ + +SSYVS+++ +GV++A ++FD+EQ R L + ARD G
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSG 599
P LS+NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 659
NAWLSY +L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT T
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
Query: 660 LHLVFADNLQEILPDLSDRPVLSDPQ-AELQFYLVVALALISVLFLLAVILAIALRLRR 717
L + AD++ E+L DL L++ + ++L YLVVA+A +S +FL+ VI+ +ALRL R
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWR 719
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 671 bits (1730), Expect = 0.0
Identities = 350/704 (49%), Positives = 478/704 (67%), Gaps = 3/704 (0%)
Query: 17 LFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH-- 74
L +LL + + I YS+ EE KGS VG++AKDLGL +++ R +R+ +
Sbjct: 15 LLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQL 74
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+++ SG L+ RIDRE+IC + RC + ++E+ +N++ + V I D+ND+ P+F
Sbjct: 75 FALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFL 134
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
+EI+++I E+ + G R L A DPD+ NS++ Y+++ N +FSL V+ D KYPEL
Sbjct: 135 TEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPEL 194
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
LE++LDREE+R H L+LTA DGGDPPRS+TAHI+++V D ND+ PVFS +Y++++ EN
Sbjct: 195 VLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPEN 254
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+P G+ +L V A D DEGVN E+ Y FR MF L+ TG I + D+E+
Sbjct: 255 VPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAF 314
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Y MEV+A+DG G T+ KV+I +LD NDN+PE+ +TSLS I E++P G V+ALF +D
Sbjct: 315 YEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDR 374
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NGEV C I ++PFK+ S +NYY+LVT LDRE YN+T+ ATD G PPLS
Sbjct: 375 DSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSR 434
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
I + VAD NDN P F +SY V++AENNP GASI V+A D D N I+YS+
Sbjct: 435 ETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAED 494
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
++ VSSYVS+++ +GV++A ++FD+EQLR L + A D G P LS+N+SL + V D
Sbjct: 495 TIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLD 554
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
+NDN P +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 555 QNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ E+L D
Sbjct: 615 GLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 674
Query: 675 LSDRPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRR 717
L P +L YLVVA+A +S +FL V++ +ALRLRR
Sbjct: 675 LGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRR 718
>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
[Homo sapiens]
Length = 817
Score = 671 bits (1730), Expect = 0.0
Identities = 350/704 (49%), Positives = 478/704 (67%), Gaps = 3/704 (0%)
Query: 17 LFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH-- 74
L +LL + + I YS+ EE KGS VG++AKDLGL +++ R +R+ +
Sbjct: 15 LLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQL 74
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+++ SG L+ RIDRE+IC + RC + ++E+ +N++ + V I D+ND+ P+F
Sbjct: 75 FALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFL 134
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
+EI+++I E+ + G R L A DPD+ NS++ Y+++ N +FSL V+ D KYPEL
Sbjct: 135 TEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPEL 194
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
LE++LDREE+R H L+LTA DGGDPPRS+TAHI+++V D ND+ PVFS +Y++++ EN
Sbjct: 195 VLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPEN 254
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+P G+ +L V A D DEGVN E+ Y FR MF L+ TG I + D+E+
Sbjct: 255 VPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAF 314
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Y MEV+A+DG G T+ KV+I +LD NDN+PE+ +TSLS I E++P G V+ALF +D
Sbjct: 315 YEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDR 374
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NGEV C I ++PFK+ S +NYY+LVT LDRE YN+T+ ATD G PPLS
Sbjct: 375 DSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSR 434
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
I + VAD NDN P F +SY V++AENNP GASI V+A D D N I+YS+
Sbjct: 435 ETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAED 494
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
++ VSSYVS+++ +GV++A ++FD+EQLR L + A D G P LS+N+SL + V D
Sbjct: 495 TIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLD 554
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
+NDN P +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 555 QNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ E+L D
Sbjct: 615 GLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 674
Query: 675 LSDRPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRR 717
L P +L YLVVA+A +S +FL V++ +ALRLRR
Sbjct: 675 LGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRR 718
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 666 bits (1718), Expect = 0.0
Identities = 349/721 (48%), Positives = 482/721 (66%), Gaps = 10/721 (1%)
Query: 6 AQRRRAGPRQ-----VLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
AQR R+ + VL L + + + I YSIPEEL KGS VGN++KDLGL+ +
Sbjct: 3 AQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRE 62
Query: 61 VSARKLRVSAEKLH--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFH 118
++ R +R+ + FS++ SG L+ RIDRE++C + RC + +VE+ + +F
Sbjct: 63 LAERGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFG 122
Query: 119 VIVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYF 178
+ + + D+ND+AP+F + + ++I E+ +AG R L A DPD+ +NS++ Y+++ N +F
Sbjct: 123 IEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHF 182
Query: 179 SLMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDN 238
SL V+ ++G KYPEL LE LDREE+ H L+LTA DGGDP RS T + ++V D NDN
Sbjct: 183 SLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDN 242
Query: 239 PPVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKT 298
PVF+ EYR+S+ ENLP G+ +L VTATD+DEG N E+ Y FR + F L++ T
Sbjct: 243 APVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYT 302
Query: 299 GMIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILE 358
G IK +++ D+E+ Y +E++A+DGG KV+I + D NDNSPE+ ITSL + E
Sbjct: 303 GEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTE 362
Query: 359 NSPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEY 418
+SP G VVAL DLD NG+V C+I +PFK+ S ++YY+LV ALDREQ Y
Sbjct: 363 DSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSY 422
Query: 419 NVTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASD 478
N+T+ ATD G PPLS+ L VADINDN P F Q SY ++ ENN GASI V+A D
Sbjct: 423 NITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALD 482
Query: 479 PDLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHG 538
PD N I YS+ ++ + +SSY+S+++ +GV++A R+FD+EQ + + A D G
Sbjct: 483 PDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSG 542
Query: 539 SPTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADS 598
P LS+NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DS
Sbjct: 543 DPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDS 602
Query: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
G NAWLSY +L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT
Sbjct: 603 GQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 662
Query: 659 TLHLVFADNLQEILPDLS--DRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLR 716
TL + AD++ ++L DL + P S+ ++L YLVVA+A +S +FL VI+ +A RLR
Sbjct: 663 TLTVAVADSIPQVLADLGSFESPANSE-TSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLR 721
Query: 717 R 717
R
Sbjct: 722 R 722
>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
[Homo sapiens]
Length = 850
Score = 666 bits (1718), Expect = 0.0
Identities = 349/721 (48%), Positives = 482/721 (66%), Gaps = 10/721 (1%)
Query: 6 AQRRRAGPRQ-----VLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
AQR R+ + VL L + + + I YSIPEEL KGS VGN++KDLGL+ +
Sbjct: 3 AQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRE 62
Query: 61 VSARKLRVSAEKLH--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFH 118
++ R +R+ + FS++ SG L+ RIDRE++C + RC + +VE+ + +F
Sbjct: 63 LAERGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFG 122
Query: 119 VIVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYF 178
+ + + D+ND+AP+F + + ++I E+ +AG R L A DPD+ +NS++ Y+++ N +F
Sbjct: 123 IEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHF 182
Query: 179 SLMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDN 238
SL V+ ++G KYPEL LE LDREE+ H L+LTA DGGDP RS T + ++V D NDN
Sbjct: 183 SLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDN 242
Query: 239 PPVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKT 298
PVF+ EYR+S+ ENLP G+ +L VTATD+DEG N E+ Y FR + F L++ T
Sbjct: 243 APVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYT 302
Query: 299 GMIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILE 358
G IK +++ D+E+ Y +E++A+DGG KV+I + D NDNSPE+ ITSL + E
Sbjct: 303 GEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTE 362
Query: 359 NSPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEY 418
+SP G VVAL DLD NG+V C+I +PFK+ S ++YY+LV ALDREQ Y
Sbjct: 363 DSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSY 422
Query: 419 NVTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASD 478
N+T+ ATD G PPLS+ L VADINDN P F Q SY ++ ENN GASI V+A D
Sbjct: 423 NITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALD 482
Query: 479 PDLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHG 538
PD N I YS+ ++ + +SSY+S+++ +GV++A R+FD+EQ + + A D G
Sbjct: 483 PDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSG 542
Query: 539 SPTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADS 598
P LS+NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DS
Sbjct: 543 DPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDS 602
Query: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
G NAWLSY +L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT
Sbjct: 603 GQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 662
Query: 659 TLHLVFADNLQEILPDLS--DRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLR 716
TL + AD++ ++L DL + P S+ ++L YLVVA+A +S +FL VI+ +A RLR
Sbjct: 663 TLTVAVADSIPQVLADLGSFESPANSE-TSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLR 721
Query: 717 R 717
R
Sbjct: 722 R 722
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 666 bits (1718), Expect = 0.0
Identities = 348/711 (48%), Positives = 476/711 (66%), Gaps = 3/711 (0%)
Query: 10 RAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVS 69
R G L LL T S IRYS+ EEL KGS VGN+A DLGL +++ R +R+
Sbjct: 8 RNGRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIV 67
Query: 70 AEKLH--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVN 127
+ FS++ +SG L+ RIDRE++C + C +++ +VE+ L IF V + I+D+N
Sbjct: 68 SRGRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDIN 127
Query: 128 DHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSD 187
D+AP F +E+ ++I E GTR + A DPD+ INS+++YK++ N YFSL V S+
Sbjct: 128 DNAPNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSE 187
Query: 188 GGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEY 247
G KYPEL LE+ LDRE++ H L+L A DGGDP S HI++ V D NDNPP+F++ EY
Sbjct: 188 GAKYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEY 247
Query: 248 RISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSF 307
R+S+ EN+P G+ +L V ATD DEG NA+++Y +F L+ +G + +S
Sbjct: 248 RVSVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSL 307
Query: 308 DFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVA 367
D+ED Y +++EA+DG GL ++ K+++ +LD NDN+PEI ITSL+ + E G +A
Sbjct: 308 DYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIA 367
Query: 368 LFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDR 427
L D D G NG+V + ++PFK+ S + YY+LVT +LDREQ EYN+++ A+D
Sbjct: 368 LIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDG 427
Query: 428 GKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHI 487
G PPLS+ ITL+V DINDN P F SY ++ ENNP GASI V+A DPD N I
Sbjct: 428 GSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARI 487
Query: 488 SYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVS 547
+Y++ L+ +SS+VS+++ +GV++A R+FD+EQ R L + A D G+P LS+NVS
Sbjct: 488 TYALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVS 547
Query: 548 LRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYH 607
L + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 548 LNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYR 607
Query: 608 VLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADN 667
+L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD
Sbjct: 608 LLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADR 667
Query: 668 LQEILPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRR 717
+ +IL DL S P ++L YLVVA+A +S +FL VI+ +ALRLRR
Sbjct: 668 IPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRR 718
>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
[Homo sapiens]
Length = 829
Score = 666 bits (1718), Expect = 0.0
Identities = 348/711 (48%), Positives = 476/711 (66%), Gaps = 3/711 (0%)
Query: 10 RAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVS 69
R G L LL T S IRYS+ EEL KGS VGN+A DLGL +++ R +R+
Sbjct: 8 RNGRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIV 67
Query: 70 AEKLH--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVN 127
+ FS++ +SG L+ RIDRE++C + C +++ +VE+ L IF V + I+D+N
Sbjct: 68 SRGRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDIN 127
Query: 128 DHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSD 187
D+AP F +E+ ++I E GTR + A DPD+ INS+++YK++ N YFSL V S+
Sbjct: 128 DNAPNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSE 187
Query: 188 GGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEY 247
G KYPEL LE+ LDRE++ H L+L A DGGDP S HI++ V D NDNPP+F++ EY
Sbjct: 188 GAKYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEY 247
Query: 248 RISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSF 307
R+S+ EN+P G+ +L V ATD DEG NA+++Y +F L+ +G + +S
Sbjct: 248 RVSVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSL 307
Query: 308 DFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVA 367
D+ED Y +++EA+DG GL ++ K+++ +LD NDN+PEI ITSL+ + E G +A
Sbjct: 308 DYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIA 367
Query: 368 LFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDR 427
L D D G NG+V + ++PFK+ S + YY+LVT +LDREQ EYN+++ A+D
Sbjct: 368 LIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDG 427
Query: 428 GKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHI 487
G PPLS+ ITL+V DINDN P F SY ++ ENNP GASI V+A DPD N I
Sbjct: 428 GSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARI 487
Query: 488 SYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVS 547
+Y++ L+ +SS+VS+++ +GV++A R+FD+EQ R L + A D G+P LS+NVS
Sbjct: 488 TYALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVS 547
Query: 548 LRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYH 607
L + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 548 LNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYR 607
Query: 608 VLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADN 667
+L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD
Sbjct: 608 LLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADR 667
Query: 668 LQEILPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRR 717
+ +IL DL S P ++L YLVVA+A +S +FL VI+ +ALRLRR
Sbjct: 668 IPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRR 718
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 665 bits (1715), Expect = 0.0
Identities = 341/701 (48%), Positives = 468/701 (66%), Gaps = 3/701 (0%)
Query: 20 LLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH--FSV 77
LLL + +E I YS+ EE +GSVVGN+AKDLGL+ +++ R +R+ + F++
Sbjct: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
Query: 78 DAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKE 137
+ SG L+ RIDRE++C C LE ++E+ + I V V I DVND+ P F ++
Sbjct: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
Query: 138 IHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLE 197
+++ E+ + G R L A DPD+ +NS++ Y++NSN YFSL V+ +DG KYPEL LE
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
Query: 198 KLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPP 257
+ LDREE+ H L+LTA DGGDP RS TA I I + DTNDN PVF++ EY +S+ EN+P
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
Query: 258 GSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVERYTM 317
G+ +L V ATD DEG N ++ Y FR +F L+ +G I D+ED Y +
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
Query: 318 EVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFG 377
+VEA DG GL + KV++ +LDENDN+PE+ +TSL+ + E+S PG V+ALF D D G
Sbjct: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
Query: 378 GNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRS 437
GNG V C+I ++PF + + NYY+L+T LDRE+ EYN+T+ ATD+G PPLS+
Sbjct: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
Query: 438 ITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVASDLE 497
I+L V DINDN P F SY ++ ENNP GASI ++A DPD G N I+YS+ +
Sbjct: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
Query: 498 PLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRND 557
+SSYVS+++ +G+++A +FD+EQ R L + A D G P LS+NVSL + V D+ND
Sbjct: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
Query: 558 NAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLF 617
N P +LYP DGS ++ PRSA+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF
Sbjct: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
Query: 618 SLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDLSD 677
++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + AD++ ++L DL
Sbjct: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
Query: 678 RPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRR 717
+DP + L YLVVA+A +S +FL V + +AL+LRR
Sbjct: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 665 bits (1715), Expect = 0.0
Identities = 341/701 (48%), Positives = 468/701 (66%), Gaps = 3/701 (0%)
Query: 20 LLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH--FSV 77
LLL + +E I YS+ EE +GSVVGN+AKDLGL+ +++ R +R+ + F++
Sbjct: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
Query: 78 DAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKE 137
+ SG L+ RIDRE++C C LE ++E+ + I V V I DVND+ P F ++
Sbjct: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
Query: 138 IHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLE 197
+++ E+ + G R L A DPD+ +NS++ Y++NSN YFSL V+ +DG KYPEL LE
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
Query: 198 KLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPP 257
+ LDREE+ H L+LTA DGGDP RS TA I I + DTNDN PVF++ EY +S+ EN+P
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
Query: 258 GSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVERYTM 317
G+ +L V ATD DEG N ++ Y FR +F L+ +G I D+ED Y +
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
Query: 318 EVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFG 377
+VEA DG GL + KV++ +LDENDN+PE+ +TSL+ + E+S PG V+ALF D D G
Sbjct: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
Query: 378 GNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRS 437
GNG V C+I ++PF + + NYY+L+T LDRE+ EYN+T+ ATD+G PPLS+
Sbjct: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
Query: 438 ITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVASDLE 497
I+L V DINDN P F SY ++ ENNP GASI ++A DPD G N I+YS+ +
Sbjct: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
Query: 498 PLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRND 557
+SSYVS+++ +G+++A +FD+EQ R L + A D G P LS+NVSL + V D+ND
Sbjct: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
Query: 558 NAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLF 617
N P +LYP DGS ++ PRSA+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF
Sbjct: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
Query: 618 SLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDLSD 677
++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + AD++ ++L DL
Sbjct: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
Query: 678 RPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRR 717
+DP + L YLVVA+A +S +FL V + +AL+LRR
Sbjct: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,967,226
Number of Sequences: 37866
Number of extensions: 1529924
Number of successful extensions: 10617
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 692
length of query: 820
length of database: 18,247,518
effective HSP length: 111
effective length of query: 709
effective length of database: 14,044,392
effective search space: 9957473928
effective search space used: 9957473928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.