Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 14196455
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14196455 protocadherin gamma subfamily A, 11 isoform 3
precursor [Homo sapiens]
(750 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precur... 1488 0.0
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 1233 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 1233 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 865 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 865 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 852 0.0
gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precurso... 852 0.0
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 849 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 849 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 848 0.0
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur... 848 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 843 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 843 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 834 0.0
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs... 834 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 831 0.0
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs... 831 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 828 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 828 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 822 0.0
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs... 822 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 812 0.0
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 812 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 798 0.0
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs... 798 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 613 e-175
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 613 e-175
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 602 e-172
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 602 e-172
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 596 e-170
>gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precursor
[Homo sapiens]
Length = 750
Score = 1488 bits (3851), Expect = 0.0
Identities = 750/750 (100%), Positives = 750/750 (100%)
Query: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL
Sbjct: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 660
QNAWLSYRLLKASEPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 660
Query: 661 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 720
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 661 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 720
Query: 721 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 750
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 721 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 750
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 1233 bits (3191), Expect = 0.0
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL
Sbjct: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
QNAWLSYRLLKASEPGLFAVGEHTGE
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
Score = 153 bits (386), Expect = 6e-37
Identities = 164/585 (28%), Positives = 248/585 (42%), Gaps = 72/585 (12%)
Query: 70 RGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEII--DI 127
RG+T A NP L+ G +DRE+ + L L D ++ V + ++ D+
Sbjct: 184 RGRTD-GAKNPE---LVLEGSLDREK---EAAHLLLLTALDGGDPIRKGAVPIRVVVLDV 236
Query: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVN-----SLQSYQLSPNNYFSLQ 182
ND+ P F + + V E+ G R + NA DPD G+N S ++ + + F L
Sbjct: 237 NDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLD 296
Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
++ E+ + GSLD EK + + + DGG + I VV DVND+ P
Sbjct: 297 -------SQTGEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVV--DVNDNAPE 347
Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG-- 300
T + S+ EN GT + ++N D D G NG+V N F+L+ G
Sbjct: 348 ITITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLP-----FKLEKTYGNY 402
Query: 301 -EVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSI 357
++ LD E + Y + + D G L T + + V D NDN P +S I
Sbjct: 403 YKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYI 462
Query: 358 LENSPPGTVIALLNVQDQDSGENGQVSCF--------IPNHLPFKLEKTYGNYYKLITSR 409
EN+P G I + D DS +N V+ +P + G Y L +
Sbjct: 463 PENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYAL---Q 519
Query: 410 VLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAYI 462
D E + + + A D G PPLS+ + L V D NDN P ++P S+
Sbjct: 520 SFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELA 579
Query: 463 PENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFD 522
P + G + V A+D DS QNA ++Y L + G+ ++ +TG + ++
Sbjct: 580 PRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGL-----FAVGEHTGEVRTARALL 634
Query: 523 YEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRS 582
L V +D G PPLS+ V+L++ V D+ PE+L + E + S
Sbjct: 635 DRDALKQSLVVAVQDHGQPPLSATVTLTVAVA---DSIPEVLADLGSLESLANSETSDLS 691
Query: 583 AEPGYLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGL 617
YLV V AV W RLL+ASE GL
Sbjct: 692 L---YLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 1233 bits (3191), Expect = 0.0
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL
Sbjct: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
QNAWLSYRLLKASEPGLFAVGEHTGE
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
Score = 367 bits (941), Expect = e-101
Identities = 267/753 (35%), Positives = 379/753 (50%), Gaps = 101/753 (13%)
Query: 33 RYSVPEETEKGS---FVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAG 89
R SVPE G+ V D G+ + R + +++F ++ ++G + G
Sbjct: 249 RVSVPENISSGTRVLMVNATDPDEGINGEVMYS--FRNMESKASEIFQLDSQTGEVQVRG 306
Query: 90 RIDREELCETVSSCFLNMELLVEDTLKIYGVE---VEIIDINDNAPSFQEDEVEIKVSEH 146
+D E+ F ME+ +D ++ + ++D+NDNAP + E+
Sbjct: 307 SLDFEKYR------FYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 147 AIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKE 206
+ PG AL N +D D G N S + + F L+ +T G +L+ LDRE
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLE---KTYG-NYYKLITSRVLDRELV 416
Query: 207 AAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVN 266
++ + LTA D G P + + V D ND+ P+F S Y +PEN G + V
Sbjct: 417 QSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVT 476
Query: 267 ATDPDEGINGEVMYSFRNMESKA---SEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQ 323
A DPD N V YS + + S ++S TG + S D+E++R E+ + +
Sbjct: 477 ALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIAR 536
Query: 324 DGGG--LFTTTTMLITVVDVNDNAPEITI-------TSSINSILENSPPGTVIALLNVQD 374
D G L + ++ + V+D NDNAPEI ++ + ++ PG ++ + D
Sbjct: 537 DSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD 596
Query: 375 QDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSR-VLDRELVQSYNITLTATDQGSPPL 433
+DSG+N +S + L + ++ T+R +LDR+ ++ ++ + D G PPL
Sbjct: 597 KDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQ-SLVVAVQDHGQPPL 655
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS----------- 482
SA + + VAD P V + + S++ V A+ S
Sbjct: 656 SATVTLTVAVADSI--PEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLL 713
Query: 483 -----KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARD 537
+ + ++ + G+P S +V ++ GV LQ++ +E
Sbjct: 714 ALRLWRWHKSRLLQASEGGLAGMPTSHFVGVD---GVQAFLQTYSHE------------- 757
Query: 538 SGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDK 597
+SL Q + +++P P G T + L+ + A+
Sbjct: 758 -----------VSLIADSQKSH---LIFPQ-PNYGDTLISQESCEKSEPLLIAEDSAI-- 800
Query: 598 DSGQNAWLSYRLLKASEPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 657
+L +P + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 801 -----------ILGKCDPT-------SNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
Query: 658 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 717
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
Query: 718 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 750
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
Score = 153 bits (386), Expect = 6e-37
Identities = 164/585 (28%), Positives = 248/585 (42%), Gaps = 72/585 (12%)
Query: 70 RGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEII--DI 127
RG+T A NP L+ G +DRE+ + L L D ++ V + ++ D+
Sbjct: 184 RGRTD-GAKNPE---LVLEGSLDREK---EAAHLLLLTALDGGDPIRKGAVPIRVVVLDV 236
Query: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVN-----SLQSYQLSPNNYFSLQ 182
ND+ P F + + V E+ G R + NA DPD G+N S ++ + + F L
Sbjct: 237 NDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLD 296
Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
++ E+ + GSLD EK + + + DGG + I VV DVND+ P
Sbjct: 297 -------SQTGEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVV--DVNDNAPE 347
Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG-- 300
T + S+ EN GT + ++N D D G NG+V N F+L+ G
Sbjct: 348 ITITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLP-----FKLEKTYGNY 402
Query: 301 -EVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSI 357
++ LD E + Y + + D G L T + + V D NDN P +S I
Sbjct: 403 YKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYI 462
Query: 358 LENSPPGTVIALLNVQDQDSGENGQVSCF--------IPNHLPFKLEKTYGNYYKLITSR 409
EN+P G I + D DS +N V+ +P + G Y L +
Sbjct: 463 PENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYAL---Q 519
Query: 410 VLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAYI 462
D E + + + A D G PPLS+ + L V D NDN P ++P S+
Sbjct: 520 SFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELA 579
Query: 463 PENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFD 522
P + G + V A+D DS QNA ++Y L + G+ ++ +TG + ++
Sbjct: 580 PRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGL-----FAVGEHTGEVRTARALL 634
Query: 523 YEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRS 582
L V +D G PPLS+ V+L++ V D+ PE+L + E + S
Sbjct: 635 DRDALKQSLVVAVQDHGQPPLSATVTLTVAVA---DSIPEVLADLGSLESLANSETSDLS 691
Query: 583 AEPGYLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGL 617
YLV V AV W RLL+ASE GL
Sbjct: 692 L---YLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 865 bits (2236), Expect = 0.0
Identities = 430/613 (70%), Positives = 510/613 (83%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
L+LL I LGTL QIRYSVPEE EKGS VG+IS+DLGLEPRELA+RGVRI+ RG+T
Sbjct: 13 LVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRT 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
QLFA+NPRSGSL+TAGRIDREELC C LN+++L+ED +KIYGVEVE+ DINDNAP
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPY 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
F+E E+EIK+SE+A RF LP+A DPD+G NSLQSY+LSPN +FSL ++ DG+K P
Sbjct: 133 FRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
ELVL+ +LDRE++AAH L+LTA DGGDP+R G IRV+VLD ND+ P F Q YR SVP
Sbjct: 193 ELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVP 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
EN++ GT++L+VNATDPDEG+N EV YSFR ++ KA+++F+LD +G + G LD E+
Sbjct: 253 ENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEES 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
FY+ME+Q D G +LITV+DVNDNAPE+ +TS +S+ ENSP GT+IALLNV
Sbjct: 313 GFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVN 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
DQDS ENGQV CFI +LPFKLEK+YGNYY L+T VLDRE V SYNIT+TATD+G+PPL
Sbjct: 373 DQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S ETH+ LNVAD NDNPPVFP +SYSAYIPENNPRG S+ SVTA DPD ++NA +TYSL
Sbjct: 433 STETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLA 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
++T+QG LSSYVSINS+TGVLYAL SFDYEQFRDL+++V+ARD+G PPLSSNVSLSLFV
Sbjct: 493 ENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFV 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLF+VG HTGE
Sbjct: 613 EPGLFSVGLHTGE 625
Score = 260 bits (665), Expect = 3e-69
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 626 EQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 685
EQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG
Sbjct: 808 EQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 867
Query: 686 GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG 745
GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG
Sbjct: 868 GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG 927
Query: 746 KKEKK 750
KKEKK
Sbjct: 928 KKEKK 932
Score = 150 bits (379), Expect = 4e-36
Identities = 147/533 (27%), Positives = 221/533 (41%), Gaps = 63/533 (11%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-----S 174
+ V ++D NDNAP+F + E V E+ G + + NA DPD GVN+ Y
Sbjct: 228 IRVMVLDANDNAPAFAQPEYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDK 287
Query: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
F L T + G LD E+ + + + A+D + V I VL
Sbjct: 288 AAQVFKLDCNSGT-------ISTIGELDHEESGFYQMEVQAMDNAGYSARAKVLI--TVL 338
Query: 235 DVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQ 294
DVND+ P + SVPEN GT + ++N D D NG+V+ + + F+
Sbjct: 339 DVNDNAPEVVLTSLASSVPENSPRGTLIALLNVNDQDSEENGQVICFIQG-----NLPFK 393
Query: 295 LDSQTGEVQVRGS---LDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEIT 349
L+ G + LD E+ Y + + D G L T T + + V D NDN P
Sbjct: 394 LEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLSTETHISLNVADTNDNPPVFP 453
Query: 350 ITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLP--------FKLEKTYGN 401
S I EN+P G + + D D EN Q++ + + + G
Sbjct: 454 QASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAENTIQGASLSSYVSINSDTGV 513
Query: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH---- 455
Y L + D E + + + A D G PPLS+ + L V D NDN P ++P
Sbjct: 514 LYALSS---FDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVLDQNDNAPEILYPALPTD 570
Query: 456 -SSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGV 514
S+ P + G + V A+D DS QNA ++Y L + G+ S+ +TG
Sbjct: 571 GSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGE 625
Query: 515 LYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGST 574
+ ++ L V +D G PPLS+ V+L++ V D+ P++L +
Sbjct: 626 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA---DSIPQVLADLGSLESPA 682
Query: 575 GVELAPRSAEPGYLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGL 617
E + + YLV V AV W RLL+AS GL
Sbjct: 683 NSETSDLTL---YLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGL 732
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 865 bits (2236), Expect = 0.0
Identities = 430/613 (70%), Positives = 510/613 (83%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
L+LL I LGTL QIRYSVPEE EKGS VG+IS+DLGLEPRELA+RGVRI+ RG+T
Sbjct: 13 LVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRT 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
QLFA+NPRSGSL+TAGRIDREELC C LN+++L+ED +KIYGVEVE+ DINDNAP
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPY 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
F+E E+EIK+SE+A RF LP+A DPD+G NSLQSY+LSPN +FSL ++ DG+K P
Sbjct: 133 FRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
ELVL+ +LDRE++AAH L+LTA DGGDP+R G IRV+VLD ND+ P F Q YR SVP
Sbjct: 193 ELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVP 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
EN++ GT++L+VNATDPDEG+N EV YSFR ++ KA+++F+LD +G + G LD E+
Sbjct: 253 ENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEES 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
FY+ME+Q D G +LITV+DVNDNAPE+ +TS +S+ ENSP GT+IALLNV
Sbjct: 313 GFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVN 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
DQDS ENGQV CFI +LPFKLEK+YGNYY L+T VLDRE V SYNIT+TATD+G+PPL
Sbjct: 373 DQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S ETH+ LNVAD NDNPPVFP +SYSAYIPENNPRG S+ SVTA DPD ++NA +TYSL
Sbjct: 433 STETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLA 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
++T+QG LSSYVSINS+TGVLYAL SFDYEQFRDL+++V+ARD+G PPLSSNVSLSLFV
Sbjct: 493 ENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFV 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLF+VG HTGE
Sbjct: 613 EPGLFSVGLHTGE 625
Score = 150 bits (379), Expect = 4e-36
Identities = 147/533 (27%), Positives = 221/533 (41%), Gaps = 63/533 (11%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-----S 174
+ V ++D NDNAP+F + E V E+ G + + NA DPD GVN+ Y
Sbjct: 228 IRVMVLDANDNAPAFAQPEYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDK 287
Query: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
F L T + G LD E+ + + + A+D + V I VL
Sbjct: 288 AAQVFKLDCNSGT-------ISTIGELDHEESGFYQMEVQAMDNAGYSARAKVLI--TVL 338
Query: 235 DVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQ 294
DVND+ P + SVPEN GT + ++N D D NG+V+ + + F+
Sbjct: 339 DVNDNAPEVVLTSLASSVPENSPRGTLIALLNVNDQDSEENGQVICFIQG-----NLPFK 393
Query: 295 LDSQTGEVQVRGS---LDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEIT 349
L+ G + LD E+ Y + + D G L T T + + V D NDN P
Sbjct: 394 LEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLSTETHISLNVADTNDNPPVFP 453
Query: 350 ITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLP--------FKLEKTYGN 401
S I EN+P G + + D D EN Q++ + + + G
Sbjct: 454 QASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAENTIQGASLSSYVSINSDTGV 513
Query: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH---- 455
Y L + D E + + + A D G PPLS+ + L V D NDN P ++P
Sbjct: 514 LYALSS---FDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVLDQNDNAPEILYPALPTD 570
Query: 456 -SSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGV 514
S+ P + G + V A+D DS QNA ++Y L + G+ S+ +TG
Sbjct: 571 GSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGE 625
Query: 515 LYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGST 574
+ ++ L V +D G PPLS+ V+L++ V D+ P++L +
Sbjct: 626 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA---DSIPQVLADLGSLESPA 682
Query: 575 GVELAPRSAEPGYLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGL 617
E + + YLV V AV W RLL+AS GL
Sbjct: 683 NSETSDLTL---YLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGL 732
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 852 bits (2202), Expect = 0.0
Identities = 431/624 (69%), Positives = 509/624 (81%), Gaps = 4/624 (0%)
Query: 3 NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
+R +RG+ L+LLC LGTL QIRYSVPEET+KGSFVGNISKDLGL+PR+LAK
Sbjct: 6 SRPRRGE----LILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAK 61
Query: 63 RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
GVRIVSRG+TQLFA+NPRSGSLITAGRIDREELC C +N+ LVED K++GVE+
Sbjct: 62 HGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEI 121
Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
EIIDINDN P FQ +++E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL
Sbjct: 122 EIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLD 181
Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
++ +GA NPELVLE +LDRE+EAAH L+LTA DGG P R V I V VLD ND+ P+
Sbjct: 182 VQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPV 241
Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
F +YRV V EN+ GTR+L V A+DPDEGING+V Y FR + K + +FQL+ TGE+
Sbjct: 242 FPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGEI 301
Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
+ SLD+E+ FYEMEIQ +D G L T +LI+V DVNDN PE+ ITS + +LENS
Sbjct: 302 SIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSL 361
Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
PGTVIA L+V DQDSG+NGQV C+ ++LPFKLEK+ GNYY+L+T + LDRE V YNIT
Sbjct: 362 PGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNIT 421
Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
+ A+D G+PPLS ET + L+VAD NDNPP FPH+SYSAYI ENN RGASIFS+TA DPDS
Sbjct: 422 VMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDS 481
Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
++NA VTYS+T+DT+QG PLSSY+SINS+TGVLYALQSFDYEQ RDL+L V A DSGDPP
Sbjct: 482 QENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPP 541
Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
LSSN+SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAE GYLVTKVVAVD+DSGQN
Sbjct: 542 LSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQN 601
Query: 603 AWLSYRLLKASEPGLFAVGEHTGE 626
AWLSYRLLKASEPGLF+VG HTGE
Sbjct: 602 AWLSYRLLKASEPGLFSVGLHTGE 625
Score = 261 bits (668), Expect = 1e-69
Identities = 125/126 (99%), Positives = 126/126 (100%)
Query: 625 GEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL 684
G+QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL
Sbjct: 807 GQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL 866
Query: 685 GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS 744
GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS
Sbjct: 867 GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS 926
Query: 745 GKKEKK 750
GKKEKK
Sbjct: 927 GKKEKK 932
Score = 162 bits (411), Expect = 8e-40
Identities = 176/621 (28%), Positives = 262/621 (42%), Gaps = 69/621 (11%)
Query: 33 RYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAGRID 92
RY +PE + V ++ + L P V+ G A+NP L+ +D
Sbjct: 151 RYPLPEAVDPDVGVNSL-QSYQLSPNHHFSLDVQTGDNG-----AINPE---LVLERALD 201
Query: 93 REELCETVSSCFLNMELLVEDTLK-----IYGVEVEIIDINDNAPSFQEDEVEIKVSEHA 147
REE ++ L D K + V ++D NDNAP F +KV E+
Sbjct: 202 REE------EAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENM 255
Query: 148 IPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEA 207
PG R A DPD G+N +Y+ N L + E+ + SLD E+ +
Sbjct: 256 PPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTG--EISIAKSLDYEECS 313
Query: 208 AHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNA 267
+ + + A D G + G + + V DVND+ P + V EN GT + ++
Sbjct: 314 FYEMEIQAEDVGALL--GRTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSV 371
Query: 268 TDPDEGINGEVM-YSFRNMESKASEIFQLDSQTGE---VQVRGSLDFEKYRFYEMEIQGQ 323
D D G NG+V+ Y+ N+ F+L+ G + R LD E Y + +
Sbjct: 372 HDQDSGKNGQVVCYTRDNLP------FKLEKSIGNYYRLVTRKYLDRENVSIYNITVMAS 425
Query: 324 DGGG--LFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQDSGENG 381
D G L T T + + V D+NDN P S ILEN+ G I L D DS EN
Sbjct: 426 DLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENA 485
Query: 382 QVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
QV+ + P + G Y L + D E ++ + +TA+D G PPL
Sbjct: 486 QVTYSVTEDTLQGAPLSSYISINSDTGVLYAL---QSFDYEQIRDLQLLVTASDSGDPPL 542
Query: 434 SAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
S+ + L V D NDN P ++P S+ P + RG + V A+D DS QNA
Sbjct: 543 SSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNA 602
Query: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
++Y L + G+ S+ +TG + ++ L V +D G PPLS+
Sbjct: 603 WLSYRLLKASEPGL-----FSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSAT 657
Query: 547 VSLSLFVLDQNDNAPEI------LYPAL-PTDGSTGVELAPRSAEPGYLVTKVVAVDKDS 599
V+L++ V D+ PE+ L P++ P D S + L A + VAV
Sbjct: 658 VTLTVAVA---DSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGL 714
Query: 600 GQNAWLSYRLLKASEPGLFAV 620
W RLL+ S L V
Sbjct: 715 RLRRWHKSRLLQDSGGRLVGV 735
>gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 852 bits (2202), Expect = 0.0
Identities = 431/624 (69%), Positives = 509/624 (81%), Gaps = 4/624 (0%)
Query: 3 NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
+R +RG+ L+LLC LGTL QIRYSVPEET+KGSFVGNISKDLGL+PR+LAK
Sbjct: 6 SRPRRGE----LILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAK 61
Query: 63 RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
GVRIVSRG+TQLFA+NPRSGSLITAGRIDREELC C +N+ LVED K++GVE+
Sbjct: 62 HGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEI 121
Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
EIIDINDN P FQ +++E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL
Sbjct: 122 EIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLD 181
Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
++ +GA NPELVLE +LDRE+EAAH L+LTA DGG P R V I V VLD ND+ P+
Sbjct: 182 VQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPV 241
Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
F +YRV V EN+ GTR+L V A+DPDEGING+V Y FR + K + +FQL+ TGE+
Sbjct: 242 FPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGEI 301
Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
+ SLD+E+ FYEMEIQ +D G L T +LI+V DVNDN PE+ ITS + +LENS
Sbjct: 302 SIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSL 361
Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
PGTVIA L+V DQDSG+NGQV C+ ++LPFKLEK+ GNYY+L+T + LDRE V YNIT
Sbjct: 362 PGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNIT 421
Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
+ A+D G+PPLS ET + L+VAD NDNPP FPH+SYSAYI ENN RGASIFS+TA DPDS
Sbjct: 422 VMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDS 481
Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
++NA VTYS+T+DT+QG PLSSY+SINS+TGVLYALQSFDYEQ RDL+L V A DSGDPP
Sbjct: 482 QENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPP 541
Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
LSSN+SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAE GYLVTKVVAVD+DSGQN
Sbjct: 542 LSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQN 601
Query: 603 AWLSYRLLKASEPGLFAVGEHTGE 626
AWLSYRLLKASEPGLF+VG HTGE
Sbjct: 602 AWLSYRLLKASEPGLFSVGLHTGE 625
Score = 162 bits (411), Expect = 8e-40
Identities = 176/621 (28%), Positives = 262/621 (42%), Gaps = 69/621 (11%)
Query: 33 RYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAGRID 92
RY +PE + V ++ + L P V+ G A+NP L+ +D
Sbjct: 151 RYPLPEAVDPDVGVNSL-QSYQLSPNHHFSLDVQTGDNG-----AINPE---LVLERALD 201
Query: 93 REELCETVSSCFLNMELLVEDTLK-----IYGVEVEIIDINDNAPSFQEDEVEIKVSEHA 147
REE ++ L D K + V ++D NDNAP F +KV E+
Sbjct: 202 REE------EAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENM 255
Query: 148 IPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEA 207
PG R A DPD G+N +Y+ N L + E+ + SLD E+ +
Sbjct: 256 PPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTG--EISIAKSLDYEECS 313
Query: 208 AHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNA 267
+ + + A D G + G + + V DVND+ P + V EN GT + ++
Sbjct: 314 FYEMEIQAEDVGALL--GRTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSV 371
Query: 268 TDPDEGINGEVM-YSFRNMESKASEIFQLDSQTGE---VQVRGSLDFEKYRFYEMEIQGQ 323
D D G NG+V+ Y+ N+ F+L+ G + R LD E Y + +
Sbjct: 372 HDQDSGKNGQVVCYTRDNLP------FKLEKSIGNYYRLVTRKYLDRENVSIYNITVMAS 425
Query: 324 DGGG--LFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQDSGENG 381
D G L T T + + V D+NDN P S ILEN+ G I L D DS EN
Sbjct: 426 DLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENA 485
Query: 382 QVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
QV+ + P + G Y L + D E ++ + +TA+D G PPL
Sbjct: 486 QVTYSVTEDTLQGAPLSSYISINSDTGVLYAL---QSFDYEQIRDLQLLVTASDSGDPPL 542
Query: 434 SAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
S+ + L V D NDN P ++P S+ P + RG + V A+D DS QNA
Sbjct: 543 SSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNA 602
Query: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
++Y L + G+ S+ +TG + ++ L V +D G PPLS+
Sbjct: 603 WLSYRLLKASEPGL-----FSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSAT 657
Query: 547 VSLSLFVLDQNDNAPEI------LYPAL-PTDGSTGVELAPRSAEPGYLVTKVVAVDKDS 599
V+L++ V D+ PE+ L P++ P D S + L A + VAV
Sbjct: 658 VTLTVAVA---DSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGL 714
Query: 600 GQNAWLSYRLLKASEPGLFAV 620
W RLL+ S L V
Sbjct: 715 RLRRWHKSRLLQDSGGRLVGV 735
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 849 bits (2194), Expect = 0.0
Identities = 424/626 (67%), Positives = 502/626 (80%), Gaps = 1/626 (0%)
Query: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
MA R D +RLL + C+ LG L RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1 MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+ +C N+E+L+EDT+KI V
Sbjct: 60 AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
EVEIID+NDN PSF ++ EIKV+E+ PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
L ++ DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G I ++++D ND+
Sbjct: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
P+FTQ Y VSV EN+ GTR+L V ATDPDEG NG+V YSFR + K S++FQL+S +G
Sbjct: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
++ + G LD+E FY+++++ DG GL + +L+TV+D NDNAPE+T+TS +S+ E+
Sbjct: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V YN
Sbjct: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
DS NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
PPLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
QNAWLSY LLK+SEPGLFAVG HTGE
Sbjct: 600 QNAWLSYSLLKSSEPGLFAVGLHTGE 625
Score = 159 bits (403), Expect = 7e-39
Identities = 148/531 (27%), Positives = 237/531 (44%), Gaps = 55/531 (10%)
Query: 63 RGVRIVSRGKTQLFAVNPRSGS-------LITAGRIDREE--LCETVSSCFLNMELLVED 113
+G ++ S G F+++ +SG+ L+ +DREE + V + F + +
Sbjct: 168 QGYQLNSNG---YFSLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSG 224
Query: 114 TLKIYGVEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL 173
T +I + ++D NDNAP F + E + V E+ G R A DPD G N +Y
Sbjct: 225 TARIL---IILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSF 281
Query: 174 SPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVV 233
QL + + ++ + G LD E + + + A DG P + + V V
Sbjct: 282 RKVRDKISQLFQLN--SLSGDITILGGLDYEDSGFYDIDVEAHDG--PGLRARSKVLVTV 337
Query: 234 LDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIF 293
LD ND+ P T + SV E+ S GT + + N D D G NG V S + + F
Sbjct: 338 LDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPD-----NLPF 392
Query: 294 QLDSQTGE---VQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEI 348
L+ G + +LD E+ Y + + D G L T T + + V+D+NDN P
Sbjct: 393 TLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTF 452
Query: 349 TITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYG 400
S I EN+P G I + QD DSG+N +++ + P + G
Sbjct: 453 PHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSINSNTG 512
Query: 401 NYYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSA 460
Y L + D E + + +TA+D G PPLS+ + L V D NDN P + ++
Sbjct: 513 ILYALCS---FDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPT 569
Query: 461 -------YIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTG 513
P + G + V A+D DS QNA ++YSL + G+ ++ +TG
Sbjct: 570 DGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGL-----FAVGLHTG 624
Query: 514 VLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEIL 564
+ ++ L V+ +D G PPLS+ V+L++ V D+ P++L
Sbjct: 625 EVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVA---DSIPDVL 672
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 849 bits (2194), Expect = 0.0
Identities = 424/626 (67%), Positives = 502/626 (80%), Gaps = 1/626 (0%)
Query: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
MA R D +RLL + C+ LG L RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1 MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+ +C N+E+L+EDT+KI V
Sbjct: 60 AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
EVEIID+NDN PSF ++ EIKV+E+ PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
L ++ DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G I ++++D ND+
Sbjct: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
P+FTQ Y VSV EN+ GTR+L V ATDPDEG NG+V YSFR + K S++FQL+S +G
Sbjct: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
++ + G LD+E FY+++++ DG GL + +L+TV+D NDNAPE+T+TS +S+ E+
Sbjct: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V YN
Sbjct: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
DS NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
PPLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
QNAWLSY LLK+SEPGLFAVG HTGE
Sbjct: 600 QNAWLSYSLLKSSEPGLFAVGLHTGE 625
Score = 373 bits (958), Expect = e-103
Identities = 281/780 (36%), Positives = 392/780 (50%), Gaps = 106/780 (13%)
Query: 7 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGV- 65
R +R+L++L F + SV E G+ + + +P E A V
Sbjct: 222 RSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVK---ATDPDEGANGDVT 278
Query: 66 ---RIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYG--- 119
R V +QLF +N SG + G +D E+ S F ++++ D +
Sbjct: 279 YSFRKVRDKISQLFQLNSLSGDITILGGLDYED------SGFYDIDVEAHDGPGLRARSK 332
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYF 179
V V ++D NDNAP + V E + PG AL N D D G N L + + N F
Sbjct: 333 VLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPF 392
Query: 180 SLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDH 239
+L+ +T G L+ +LDRE+ + + + +TA D G P I + V+D+ND+
Sbjct: 393 TLE---KTYG-NYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDN 448
Query: 240 IPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRN---MESKASEIFQLD 296
P F + Y +PEN G +L + A DPD G N + YS + S ++
Sbjct: 449 PPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSIN 508
Query: 297 SQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEI---TIT 351
S TG + S D+E++R ++ + D G L + ++ + V+D NDN PEI T
Sbjct: 509 SNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFP 568
Query: 352 SSINSILENSP----PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLIT 407
+ ++ +E +P G ++ + D+DSG+N +S + L + ++ T
Sbjct: 569 TDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFAVGLHTGEVRT 628
Query: 408 SR-VLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENN 466
+R +LDR+ ++ + + D G PPLSA + + VAD P V + +
Sbjct: 629 ARALLDRDALKQ-RLVVVVQDHGQPPLSATVTLTVAVADSI--PDVLADLGSLKPSADPD 685
Query: 467 PRGASIFSVTALDPDSKQN-ALVTYSLT---------------DDTVQGVPLSSYVSINS 510
G +++ V A+ S A VT L + GVP S +V ++
Sbjct: 686 DSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPASHFVGVD- 744
Query: 511 NTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPT 570
GV LQ++ +E VSL+ + +++
Sbjct: 745 --GVRAFLQTYSHE----------------------VSLTA-----DSRKSHLIF----- 770
Query: 571 DGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGEHTGEQAPP 630
++P Y T + + + ++ LL+ G+ +QAPP
Sbjct: 771 ------------SQPSYADTLISRESCEKSEPLLITQDLLETK-------GDPNLQQAPP 811
Query: 631 NTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGT 690
NTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGT
Sbjct: 812 NTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGT 871
Query: 691 MGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 750
MGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 872 MGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
Score = 159 bits (403), Expect = 7e-39
Identities = 148/531 (27%), Positives = 237/531 (44%), Gaps = 55/531 (10%)
Query: 63 RGVRIVSRGKTQLFAVNPRSGS-------LITAGRIDREE--LCETVSSCFLNMELLVED 113
+G ++ S G F+++ +SG+ L+ +DREE + V + F + +
Sbjct: 168 QGYQLNSNG---YFSLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSG 224
Query: 114 TLKIYGVEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL 173
T +I + ++D NDNAP F + E + V E+ G R A DPD G N +Y
Sbjct: 225 TARIL---IILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSF 281
Query: 174 SPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVV 233
QL + + ++ + G LD E + + + A DG P + + V V
Sbjct: 282 RKVRDKISQLFQLN--SLSGDITILGGLDYEDSGFYDIDVEAHDG--PGLRARSKVLVTV 337
Query: 234 LDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIF 293
LD ND+ P T + SV E+ S GT + + N D D G NG V S + + F
Sbjct: 338 LDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPD-----NLPF 392
Query: 294 QLDSQTGE---VQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEI 348
L+ G + +LD E+ Y + + D G L T T + + V+D+NDN P
Sbjct: 393 TLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTF 452
Query: 349 TITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYG 400
S I EN+P G I + QD DSG+N +++ + P + G
Sbjct: 453 PHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSINSNTG 512
Query: 401 NYYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSA 460
Y L + D E + + +TA+D G PPLS+ + L V D NDN P + ++
Sbjct: 513 ILYALCS---FDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPT 569
Query: 461 -------YIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTG 513
P + G + V A+D DS QNA ++YSL + G+ ++ +TG
Sbjct: 570 DGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGL-----FAVGLHTG 624
Query: 514 VLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEIL 564
+ ++ L V+ +D G PPLS+ V+L++ V D+ P++L
Sbjct: 625 EVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVA---DSIPDVL 672
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 848 bits (2190), Expect = 0.0
Identities = 424/624 (67%), Positives = 500/624 (80%)
Query: 3 NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
NR + L+LLC+F G ARQI YS+PEE EKGSFVGNISKDLGL PRELA+
Sbjct: 6 NRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAE 65
Query: 63 RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
RGVRIVSRG+TQLF++NPRSGSLITAGRIDREELC + C ++ +LVED +K++G+E+
Sbjct: 66 RGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEI 125
Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
E+ DINDNAP FQ + +++K++E+ G RF LP A DPDVGVNSLQSYQLSPN +FSL+
Sbjct: 126 EVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLR 185
Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
++ R +G K PELVLE SLDRE+EA H L+LTA DGGDP+R G V + V V D ND+ P+
Sbjct: 186 VQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPV 245
Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
FT YRVSVPEN+ GT++L V ATD DEG NGEV YSFR + FQL+ TGE+
Sbjct: 246 FTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEI 305
Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
++ +LD+E+ FYE+EIQ +DGG T +LITV DVNDN+PE+TITS + + E+SP
Sbjct: 306 KISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSP 365
Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
GTV+ALLNV D DS +NGQV+C I +LPFKLEK+ +YY+L+ R LDRE V SYNIT
Sbjct: 366 LGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNIT 425
Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
+TATD GSPPLS E H L VAD NDNPP F SY YIPENN RGASIFSVTALDPDS
Sbjct: 426 VTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDS 485
Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
K+NA + YSL +DT+QGVPLSSY+SINS+TGVLYAL+SFDYEQF +L+++V A DSGDPP
Sbjct: 486 KENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPP 545
Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQN
Sbjct: 546 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQN 605
Query: 603 AWLSYRLLKASEPGLFAVGEHTGE 626
AWLSYRLLKASEPGLFAVGEHTGE
Sbjct: 606 AWLSYRLLKASEPGLFAVGEHTGE 629
Score = 258 bits (660), Expect = 1e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 627 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 686
QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 813 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 872
Query: 687 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 746
GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 873 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 932
Query: 747 KEKK 750
KEKK
Sbjct: 933 KEKK 936
Score = 149 bits (376), Expect = 9e-36
Identities = 152/544 (27%), Positives = 224/544 (41%), Gaps = 72/544 (13%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSY---QLSPN 176
V V + D NDNAP F E + V E+ G + A D D G N +Y +L
Sbjct: 232 VSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDT 291
Query: 177 NYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDV 236
QL T E+ + +LD E+ + + + A DGG + + + V DV
Sbjct: 292 QLLKFQLNKYTG-----EIKISENLDYEETGFYEIEIQAEDGGAYL--ATAKVLITVEDV 344
Query: 237 NDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFR-----NMESKASE 291
ND+ P T + V E+ GT V ++N D D NG+V S +E
Sbjct: 345 NDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDS 404
Query: 292 IFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEIT 349
++L + +LD E+ Y + + DGG L T ++ V D+NDN P +
Sbjct: 405 YYRL-------VIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFS 457
Query: 350 ITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCF--------IPNHLPFKLEKTYGN 401
S I EN+ G I + D DS EN Q+ +P + G
Sbjct: 458 QVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGV 517
Query: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH---- 455
Y L R D E + +TA+D G PPLS+ + L V D NDN P ++P
Sbjct: 518 LYAL---RSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTD 574
Query: 456 -SSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGV 514
S+ P + G + V A+D DS QNA ++Y L + G+ ++ +TG
Sbjct: 575 GSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FAVGEHTGE 629
Query: 515 LYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGST 574
+ ++ L V +D G PPLS+ V+L++ V D+ P++L
Sbjct: 630 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA---DSIPQVL-------ADL 679
Query: 575 GVELAPRSAEPG----YLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGLFAV 620
G +P ++E YLV V AV W RLL+AS GL V
Sbjct: 680 GSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGV 739
Query: 621 -GEH 623
G H
Sbjct: 740 SGSH 743
>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
[Homo sapiens]
Length = 850
Score = 848 bits (2190), Expect = 0.0
Identities = 424/624 (67%), Positives = 500/624 (80%)
Query: 3 NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
NR + L+LLC+F G ARQI YS+PEE EKGSFVGNISKDLGL PRELA+
Sbjct: 6 NRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAE 65
Query: 63 RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
RGVRIVSRG+TQLF++NPRSGSLITAGRIDREELC + C ++ +LVED +K++G+E+
Sbjct: 66 RGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEI 125
Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
E+ DINDNAP FQ + +++K++E+ G RF LP A DPDVGVNSLQSYQLSPN +FSL+
Sbjct: 126 EVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLR 185
Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
++ R +G K PELVLE SLDRE+EA H L+LTA DGGDP+R G V + V V D ND+ P+
Sbjct: 186 VQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPV 245
Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
FT YRVSVPEN+ GT++L V ATD DEG NGEV YSFR + FQL+ TGE+
Sbjct: 246 FTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEI 305
Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
++ +LD+E+ FYE+EIQ +DGG T +LITV DVNDN+PE+TITS + + E+SP
Sbjct: 306 KISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSP 365
Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
GTV+ALLNV D DS +NGQV+C I +LPFKLEK+ +YY+L+ R LDRE V SYNIT
Sbjct: 366 LGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNIT 425
Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
+TATD GSPPLS E H L VAD NDNPP F SY YIPENN RGASIFSVTALDPDS
Sbjct: 426 VTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDS 485
Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
K+NA + YSL +DT+QGVPLSSY+SINS+TGVLYAL+SFDYEQF +L+++V A DSGDPP
Sbjct: 486 KENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPP 545
Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQN
Sbjct: 546 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQN 605
Query: 603 AWLSYRLLKASEPGLFAVGEHTGE 626
AWLSYRLLKASEPGLFAVGEHTGE
Sbjct: 606 AWLSYRLLKASEPGLFAVGEHTGE 629
Score = 149 bits (376), Expect = 9e-36
Identities = 152/544 (27%), Positives = 224/544 (41%), Gaps = 72/544 (13%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSY---QLSPN 176
V V + D NDNAP F E + V E+ G + A D D G N +Y +L
Sbjct: 232 VSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDT 291
Query: 177 NYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDV 236
QL T E+ + +LD E+ + + + A DGG + + + V DV
Sbjct: 292 QLLKFQLNKYTG-----EIKISENLDYEETGFYEIEIQAEDGGAYL--ATAKVLITVEDV 344
Query: 237 NDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFR-----NMESKASE 291
ND+ P T + V E+ GT V ++N D D NG+V S +E
Sbjct: 345 NDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDS 404
Query: 292 IFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEIT 349
++L + +LD E+ Y + + DGG L T ++ V D+NDN P +
Sbjct: 405 YYRL-------VIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFS 457
Query: 350 ITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCF--------IPNHLPFKLEKTYGN 401
S I EN+ G I + D DS EN Q+ +P + G
Sbjct: 458 QVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGV 517
Query: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH---- 455
Y L R D E + +TA+D G PPLS+ + L V D NDN P ++P
Sbjct: 518 LYAL---RSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTD 574
Query: 456 -SSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGV 514
S+ P + G + V A+D DS QNA ++Y L + G+ ++ +TG
Sbjct: 575 GSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FAVGEHTGE 629
Query: 515 LYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGST 574
+ ++ L V +D G PPLS+ V+L++ V D+ P++L
Sbjct: 630 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA---DSIPQVL-------ADL 679
Query: 575 GVELAPRSAEPG----YLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGLFAV 620
G +P ++E YLV V AV W RLL+AS GL V
Sbjct: 680 GSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGV 739
Query: 621 -GEH 623
G H
Sbjct: 740 SGSH 743
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 843 bits (2178), Expect = 0.0
Identities = 431/613 (70%), Positives = 493/613 (80%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
LLL + LGTL + QIRYS+PEE +KGSFVGNI+KDLGLEP+ELA+RGVRIVSRG+T
Sbjct: 13 LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
QLFA+NPRSGSL+TAGRIDREELC C +N +LVE+ +KIYGVEVEIIDINDN P
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
F+++E+++KV+E+A G R LP ARD DVGVNSL+SYQLS N +FSL + TDG K P
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
ELVLE LDREKE H LLLTALDGGDP+ G IRV VLD ND+ P+FT S Y VSVP
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
ENI GTR+LM+ ATDPDEGING++ YSFRN E K SE FQLDS GE+ SLD+E+
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
RFY ME+ QDGG L + +++TV DVNDNAPE+ +TS +SI E+ PGTVIAL +V
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
D DSGENG+++C IP +LPFKLEK+ NYY L+T+R LDRE YNITLT D G+PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S E+H+ L VAD NDNPP FP +SYS + ENNPRG SIFSVTA DPDS NA VTYSL
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
+DT QG PLSSYVSINS+TGVLYAL+SFDYEQ RDL+L V A DSG+PPLSSNVSLSLFV
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDN PEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLFAVG HTGE
Sbjct: 613 EPGLFAVGLHTGE 625
Score = 158 bits (400), Expect = 2e-38
Identities = 145/495 (29%), Positives = 221/495 (44%), Gaps = 41/495 (8%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYF 179
+ V ++D NDNAP F E + V E+ G R + A DPD G+N +Y N
Sbjct: 228 IRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFR-NEEE 286
Query: 180 SLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDH 239
+ + D L+ SLD E+ +L+ + A DGG + V V V DVND+
Sbjct: 287 KISETFQLDSNLGEISTLQ-SLDYEESRFYLMEVVAQDGGALVASAKVV--VTVQDVNDN 343
Query: 240 IPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSF-RNMESKASEIFQLDSQ 298
P + S+ E+ GT + + + D D G NGE+ S RN+ K + +D+
Sbjct: 344 APEVILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEK--SVDNY 401
Query: 299 TGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINS 356
+ R LD E+ Y + + D G L T + + + V DVNDN P S S
Sbjct: 402 YHLLTTR-DLDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTS 460
Query: 357 ILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITS 408
+ EN+P G I + D DSG+N +V+ + P + G Y L
Sbjct: 461 VTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYAL--- 517
Query: 409 RVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAY 461
R D E ++ + +TA+D G+PPLS+ + L V D NDN P ++P S+
Sbjct: 518 RSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVEL 577
Query: 462 IPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSF 521
P + G + V A+D DS QNA ++Y L + G+ ++ +TG + ++
Sbjct: 578 APRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGL-----FAVGLHTGEVRTARAL 632
Query: 522 DYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPR 581
L V D G PPLS+ ++++ V D+ P+IL GS + P
Sbjct: 633 LDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADR---IPDILADL----GSIKTPIDPE 685
Query: 582 SAE-PGYLVTKVVAV 595
+ YLV V AV
Sbjct: 686 DLDLTLYLVVAVAAV 700
Score = 133 bits (334), Expect = 7e-31
Identities = 112/389 (28%), Positives = 180/389 (46%), Gaps = 27/389 (6%)
Query: 73 TQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYG---VEVEIIDIND 129
++ F ++ G + T +D EE S F ME++ +D + V V + D+ND
Sbjct: 289 SETFQLDSNLGEISTLQSLDYEE------SRFYLMEVVAQDGGALVASAKVVVTVQDVND 342
Query: 130 NAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDG 189
NAP + +SE +PG AL + D D G N + + N F L+ D
Sbjct: 343 NAPEVILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKS--VDN 400
Query: 190 AKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYR 249
+ L+ LDRE+ + + + LT +D G P I + V DVND+ P F Q+ Y
Sbjct: 401 YYH--LLTTRDLDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYS 458
Query: 250 VSVPENISSGTRVLMVNATDPDEGINGEVMYSFRN---MESKASEIFQLDSQTGEVQVRG 306
SV EN G + V A DPD G N V YS + S ++S TG +
Sbjct: 459 TSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALR 518
Query: 307 SLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITI-------TSSINSI 357
S D+E+ R ++ + D G L + ++ + V+D NDN PEI ++ +
Sbjct: 519 SFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELA 578
Query: 358 LENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSR-VLDRELV 416
++ PG ++ + D+DSG+N +S + L + ++ T+R +LDR+ +
Sbjct: 579 PRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDAL 638
Query: 417 QSYNITLTATDQGSPPLSAETHVWLNVAD 445
+ ++ + D G PPLSA V + VAD
Sbjct: 639 KQ-SLVVAVEDHGQPPLSATFTVTVAVAD 666
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 843 bits (2178), Expect = 0.0
Identities = 431/613 (70%), Positives = 493/613 (80%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
LLL + LGTL + QIRYS+PEE +KGSFVGNI+KDLGLEP+ELA+RGVRIVSRG+T
Sbjct: 13 LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
QLFA+NPRSGSL+TAGRIDREELC C +N +LVE+ +KIYGVEVEIIDINDN P
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
F+++E+++KV+E+A G R LP ARD DVGVNSL+SYQLS N +FSL + TDG K P
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
ELVLE LDREKE H LLLTALDGGDP+ G IRV VLD ND+ P+FT S Y VSVP
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
ENI GTR+LM+ ATDPDEGING++ YSFRN E K SE FQLDS GE+ SLD+E+
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
RFY ME+ QDGG L + +++TV DVNDNAPE+ +TS +SI E+ PGTVIAL +V
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
D DSGENG+++C IP +LPFKLEK+ NYY L+T+R LDRE YNITLT D G+PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S E+H+ L VAD NDNPP FP +SYS + ENNPRG SIFSVTA DPDS NA VTYSL
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
+DT QG PLSSYVSINS+TGVLYAL+SFDYEQ RDL+L V A DSG+PPLSSNVSLSLFV
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDN PEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLFAVG HTGE
Sbjct: 613 EPGLFAVGLHTGE 625
Score = 259 bits (663), Expect = 5e-69
Identities = 125/129 (96%), Positives = 126/129 (97%)
Query: 622 EHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 681
E +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS
Sbjct: 803 ERRVQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 862
Query: 682 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 741
STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK
Sbjct: 863 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 922
Query: 742 KKSGKKEKK 750
KKSGKKEKK
Sbjct: 923 KKSGKKEKK 931
Score = 158 bits (400), Expect = 2e-38
Identities = 145/495 (29%), Positives = 221/495 (44%), Gaps = 41/495 (8%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYF 179
+ V ++D NDNAP F E + V E+ G R + A DPD G+N +Y N
Sbjct: 228 IRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFR-NEEE 286
Query: 180 SLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDH 239
+ + D L+ SLD E+ +L+ + A DGG + V V V DVND+
Sbjct: 287 KISETFQLDSNLGEISTLQ-SLDYEESRFYLMEVVAQDGGALVASAKVV--VTVQDVNDN 343
Query: 240 IPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSF-RNMESKASEIFQLDSQ 298
P + S+ E+ GT + + + D D G NGE+ S RN+ K + +D+
Sbjct: 344 APEVILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEK--SVDNY 401
Query: 299 TGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINS 356
+ R LD E+ Y + + D G L T + + + V DVNDN P S S
Sbjct: 402 YHLLTTR-DLDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTS 460
Query: 357 ILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITS 408
+ EN+P G I + D DSG+N +V+ + P + G Y L
Sbjct: 461 VTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYAL--- 517
Query: 409 RVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAY 461
R D E ++ + +TA+D G+PPLS+ + L V D NDN P ++P S+
Sbjct: 518 RSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVEL 577
Query: 462 IPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSF 521
P + G + V A+D DS QNA ++Y L + G+ ++ +TG + ++
Sbjct: 578 APRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGL-----FAVGLHTGEVRTARAL 632
Query: 522 DYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPR 581
L V D G PPLS+ ++++ V D+ P+IL GS + P
Sbjct: 633 LDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADR---IPDILADL----GSIKTPIDPE 685
Query: 582 SAE-PGYLVTKVVAV 595
+ YLV V AV
Sbjct: 686 DLDLTLYLVVAVAAV 700
Score = 133 bits (334), Expect = 7e-31
Identities = 112/389 (28%), Positives = 180/389 (46%), Gaps = 27/389 (6%)
Query: 73 TQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYG---VEVEIIDIND 129
++ F ++ G + T +D EE S F ME++ +D + V V + D+ND
Sbjct: 289 SETFQLDSNLGEISTLQSLDYEE------SRFYLMEVVAQDGGALVASAKVVVTVQDVND 342
Query: 130 NAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDG 189
NAP + +SE +PG AL + D D G N + + N F L+ D
Sbjct: 343 NAPEVILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKS--VDN 400
Query: 190 AKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYR 249
+ L+ LDRE+ + + + LT +D G P I + V DVND+ P F Q+ Y
Sbjct: 401 YYH--LLTTRDLDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYS 458
Query: 250 VSVPENISSGTRVLMVNATDPDEGINGEVMYSFRN---MESKASEIFQLDSQTGEVQVRG 306
SV EN G + V A DPD G N V YS + S ++S TG +
Sbjct: 459 TSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALR 518
Query: 307 SLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITI-------TSSINSI 357
S D+E+ R ++ + D G L + ++ + V+D NDN PEI ++ +
Sbjct: 519 SFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELA 578
Query: 358 LENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSR-VLDRELV 416
++ PG ++ + D+DSG+N +S + L + ++ T+R +LDR+ +
Sbjct: 579 PRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDAL 638
Query: 417 QSYNITLTATDQGSPPLSAETHVWLNVAD 445
+ ++ + D G PPLSA V + VAD
Sbjct: 639 KQ-SLVVAVEDHGQPPLSATFTVTVAVAD 666
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 834 bits (2155), Expect = 0.0
Identities = 411/613 (67%), Positives = 496/613 (80%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
L+LLC+ L L A I YSVPEET+KGSFVGNI+KDLGL+P+ELA GVRIVSRG+
Sbjct: 13 LMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRM 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
LFA+NPRSGSLITA RIDREELC C ++ +LVED +K++ VEVEIIDINDN P
Sbjct: 73 PLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQ 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
FQ +E+E K++E PG R +LP +D DVG+NSLQSYQLS N +FSL ++ DG ++P
Sbjct: 133 FQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
E+VL+ LDRE+EA H L+LTA DGG+P+R G + I + V+D ND+ P FTQ+ Y ++VP
Sbjct: 193 EMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVP 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
EN+ GT++LMVNATDPDEG NGEV YSF N++ + ++IF+LDS TGE+ + LDFE+Y
Sbjct: 253 ENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEY 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
+ Y ME+Q QDG GL +LI V+DVNDNAPE+TITS ++ EN PPGT+IAL++V
Sbjct: 313 KMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVH 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
DQDSG+NG +CFIP +LPFKLEK NYY+L+T R LDREL+ YNIT+TA DQG+P L
Sbjct: 373 DQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPAL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S ETH+ L V D NDN PVF SYSAYIPENNPRGASIFSV A D DS +NA +TYSL
Sbjct: 433 STETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLI 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
+DT+QG PLS+Y+SINS+TGVLYAL+SFDYEQFRD++L+V+ARDSGDPPLSSNVSLSLF+
Sbjct: 493 EDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFL 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDNAPEILYPALPTDGSTGVELAP SAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLF+VG HTGE
Sbjct: 613 EPGLFSVGLHTGE 625
Score = 259 bits (663), Expect = 5e-69
Identities = 125/129 (96%), Positives = 126/129 (97%)
Query: 622 EHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 681
E +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS
Sbjct: 803 EPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 862
Query: 682 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 741
STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK
Sbjct: 863 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 922
Query: 742 KKSGKKEKK 750
KKSGKKEKK
Sbjct: 923 KKSGKKEKK 931
Score = 166 bits (419), Expect = 1e-40
Identities = 167/574 (29%), Positives = 257/574 (44%), Gaps = 47/574 (8%)
Query: 77 AVNPRSGSLITAGRIDREELCETVSSCFLNM----ELLVEDTLKIYGVEVEIIDINDNAP 132
A P+ ++ +DREE E V L E + TL+IY ++++D NDN P
Sbjct: 186 ADGPQHPEMVLQSPLDREE--EAVHHLILTASDGGEPVRSGTLRIY---IQVVDANDNPP 240
Query: 133 SFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKN 192
+F + + I V E+ G + + NA DPD G N +Y ++ Q+ R D
Sbjct: 241 AFTQAQYHINVPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIF-RLDSYTG 299
Query: 193 PELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSV 252
E+ + LD E+ + + + A DG + K V + + VLDVND+ P T + +V
Sbjct: 300 -EISNKEPLDFEEYKMYSMEVQAQDGAGLMAK--VKVLIKVLDVNDNAPEVTITSVTTAV 356
Query: 253 PENISSGTRVLMVNATDPDEGING-EVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFE 311
PEN GT + +++ D D G NG + N+ K ++ +D+ V R +LD E
Sbjct: 357 PENFPPGTIIALISVHDQDSGDNGYTTCFIPGNLPFKLEKL--VDNYYRLVTER-TLDRE 413
Query: 312 KYRFYEMEIQGQDGG--GLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIAL 369
Y + I D G L T T + + V D+NDN+P S I EN+P G I
Sbjct: 414 LISGYNITITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFS 473
Query: 370 LNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNI 421
+ D DS EN Q++ + P + G Y L R D E + +
Sbjct: 474 VRAHDLDSNENAQITYSLIEDTIQGAPLSAYLSINSDTGVLYAL---RSFDYEQFRDMQL 530
Query: 422 TLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGASIFS 474
+ A D G PPLS+ + L + D NDN P ++P S+ P + G +
Sbjct: 531 KVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTK 590
Query: 475 VTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVI 534
V A+D DS QNA ++Y L + G+ S+ +TG + ++ L V
Sbjct: 591 VVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGEVRTARALLDRDALKQSLVVA 645
Query: 535 ARDSGDPPLSSNVSLSLFVLDQ-NDNAPEI--LYP-ALPTDGSTGVELAPRSAEPGYLVT 590
+D G PPLS+ V+L++ V D+ +D ++ L P A P D + L +A +
Sbjct: 646 VQDHGQPPLSATVTLTVAVADRISDILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFL 705
Query: 591 KVVAVDKDSGQNAWLSYRLLKASEPGLFAV-GEH 623
V V W RLL+AS GL ++ G H
Sbjct: 706 AFVIVLLAHRLRRWHKSRLLQASGGGLASMPGSH 739
>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 834 bits (2155), Expect = 0.0
Identities = 411/613 (67%), Positives = 496/613 (80%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
L+LLC+ L L A I YSVPEET+KGSFVGNI+KDLGL+P+ELA GVRIVSRG+
Sbjct: 13 LMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRM 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
LFA+NPRSGSLITA RIDREELC C ++ +LVED +K++ VEVEIIDINDN P
Sbjct: 73 PLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQ 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
FQ +E+E K++E PG R +LP +D DVG+NSLQSYQLS N +FSL ++ DG ++P
Sbjct: 133 FQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
E+VL+ LDRE+EA H L+LTA DGG+P+R G + I + V+D ND+ P FTQ+ Y ++VP
Sbjct: 193 EMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVP 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
EN+ GT++LMVNATDPDEG NGEV YSF N++ + ++IF+LDS TGE+ + LDFE+Y
Sbjct: 253 ENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEY 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
+ Y ME+Q QDG GL +LI V+DVNDNAPE+TITS ++ EN PPGT+IAL++V
Sbjct: 313 KMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVH 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
DQDSG+NG +CFIP +LPFKLEK NYY+L+T R LDREL+ YNIT+TA DQG+P L
Sbjct: 373 DQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPAL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S ETH+ L V D NDN PVF SYSAYIPENNPRGASIFSV A D DS +NA +TYSL
Sbjct: 433 STETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLI 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
+DT+QG PLS+Y+SINS+TGVLYAL+SFDYEQFRD++L+V+ARDSGDPPLSSNVSLSLF+
Sbjct: 493 EDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFL 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDNAPEILYPALPTDGSTGVELAP SAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLF+VG HTGE
Sbjct: 613 EPGLFSVGLHTGE 625
Score = 166 bits (419), Expect = 1e-40
Identities = 167/574 (29%), Positives = 257/574 (44%), Gaps = 47/574 (8%)
Query: 77 AVNPRSGSLITAGRIDREELCETVSSCFLNM----ELLVEDTLKIYGVEVEIIDINDNAP 132
A P+ ++ +DREE E V L E + TL+IY ++++D NDN P
Sbjct: 186 ADGPQHPEMVLQSPLDREE--EAVHHLILTASDGGEPVRSGTLRIY---IQVVDANDNPP 240
Query: 133 SFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKN 192
+F + + I V E+ G + + NA DPD G N +Y ++ Q+ R D
Sbjct: 241 AFTQAQYHINVPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIF-RLDSYTG 299
Query: 193 PELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSV 252
E+ + LD E+ + + + A DG + K V + + VLDVND+ P T + +V
Sbjct: 300 -EISNKEPLDFEEYKMYSMEVQAQDGAGLMAK--VKVLIKVLDVNDNAPEVTITSVTTAV 356
Query: 253 PENISSGTRVLMVNATDPDEGING-EVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFE 311
PEN GT + +++ D D G NG + N+ K ++ +D+ V R +LD E
Sbjct: 357 PENFPPGTIIALISVHDQDSGDNGYTTCFIPGNLPFKLEKL--VDNYYRLVTER-TLDRE 413
Query: 312 KYRFYEMEIQGQDGG--GLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIAL 369
Y + I D G L T T + + V D+NDN+P S I EN+P G I
Sbjct: 414 LISGYNITITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFS 473
Query: 370 LNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNI 421
+ D DS EN Q++ + P + G Y L R D E + +
Sbjct: 474 VRAHDLDSNENAQITYSLIEDTIQGAPLSAYLSINSDTGVLYAL---RSFDYEQFRDMQL 530
Query: 422 TLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGASIFS 474
+ A D G PPLS+ + L + D NDN P ++P S+ P + G +
Sbjct: 531 KVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTK 590
Query: 475 VTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVI 534
V A+D DS QNA ++Y L + G+ S+ +TG + ++ L V
Sbjct: 591 VVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGEVRTARALLDRDALKQSLVVA 645
Query: 535 ARDSGDPPLSSNVSLSLFVLDQ-NDNAPEI--LYP-ALPTDGSTGVELAPRSAEPGYLVT 590
+D G PPLS+ V+L++ V D+ +D ++ L P A P D + L +A +
Sbjct: 646 VQDHGQPPLSATVTLTVAVADRISDILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFL 705
Query: 591 KVVAVDKDSGQNAWLSYRLLKASEPGLFAV-GEH 623
V V W RLL+AS GL ++ G H
Sbjct: 706 AFVIVLLAHRLRRWHKSRLLQASGGGLASMPGSH 739
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 831 bits (2146), Expect = 0.0
Identities = 417/615 (67%), Positives = 496/615 (80%)
Query: 12 RLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRG 71
R L LLC LGTL + QIRYSV EE +KGSFVGNI+ DLGLEPRELA+RGVRIVSRG
Sbjct: 11 RGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRG 70
Query: 72 KTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNA 131
+TQLF++NP+SGSL+TA RIDREELC + C + + +LVED LKI+ VE+EI DINDNA
Sbjct: 71 RTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNA 130
Query: 132 PSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAK 191
P+F +E+EIK+ E +PG RF + A DPDVG+NSLQ+Y+LSPN+YFSL + ++GAK
Sbjct: 131 PNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAK 190
Query: 192 NPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVS 251
PELVLE +LDREK+ H L+L A DGGDP+ G + I+V+VLD ND+ PMFTQ YRVS
Sbjct: 191 YPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVS 250
Query: 252 VPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFE 311
V EN+ GTR+L VNATDPDEG N +V Y M K +EIF L+S +GEV + SLD+E
Sbjct: 251 VWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYE 310
Query: 312 KYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLN 371
FYE++I+ QDG GL + +L+TV+DVNDNAPEITITS +S+ E G IAL++
Sbjct: 311 DAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALID 370
Query: 372 VQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSP 431
V D+DSG+NGQV F+ +LPFKLEK+ YY+L+T+ LDRE + YNI+L A+D GSP
Sbjct: 371 VHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSP 430
Query: 432 PLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYS 491
PLS ETH+ L+V D NDNPP FPH SYSAYIPENNPRGASIFSVTA DPDS NA +TY+
Sbjct: 431 PLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYA 490
Query: 492 LTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSL 551
LT+DT+QG PLSS+VSINSNTGVLYAL+SFDYEQFRDL+L V A DSG+PPLSSNVSL+L
Sbjct: 491 LTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNL 550
Query: 552 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLK 611
FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLK
Sbjct: 551 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610
Query: 612 ASEPGLFAVGEHTGE 626
ASEPGLF+VG HTGE
Sbjct: 611 ASEPGLFSVGLHTGE 625
Score = 259 bits (662), Expect = 6e-69
Identities = 124/125 (99%), Positives = 125/125 (100%)
Query: 626 EQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 685
+QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG
Sbjct: 808 QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 867
Query: 686 GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG 745
GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG
Sbjct: 868 GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG 927
Query: 746 KKEKK 750
KKEKK
Sbjct: 928 KKEKK 932
Score = 171 bits (433), Expect = 2e-42
Identities = 158/532 (29%), Positives = 233/532 (43%), Gaps = 48/532 (9%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLS--PNN 177
++V ++D NDN P F + E + V E+ G R NA DPD G N+ SY L P
Sbjct: 228 IQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGK 287
Query: 178 YFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVN 237
+ G E+ + SLD E + + + A DG P I V VLDVN
Sbjct: 288 IAEIFHLNSVSG----EVSILKSLDYEDAMFYEIKIEAQDG--PGLLSRAKILVTVLDVN 341
Query: 238 DHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEV-MYSFRNMESKASEIFQLD 296
D+ P T + SVPE + G + +++ D D G NG+V ++ N+ K +
Sbjct: 342 DNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSID-- 399
Query: 297 SQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSI 354
Q + SLD E+ Y + ++ DGG L T T + + V+D+NDN P S
Sbjct: 400 -QYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYS 458
Query: 355 NSILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLI 406
I EN+P G I + QD DS N +++ + P + G Y L
Sbjct: 459 AYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLYAL- 517
Query: 407 TSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYS 459
R D E + + +TA+D G+PPLS+ + L V D NDN P ++P S+
Sbjct: 518 --RSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGV 575
Query: 460 AYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQ 519
P + G + V A+D DS QNA ++Y L + G+ S+ +TG + +
Sbjct: 576 ELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGEVRTAR 630
Query: 520 SFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILY-------PALPTDG 572
+ L V +D G PPLS+ V+L++ V D+ P+IL A P D
Sbjct: 631 ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADR---IPDILADLGSLEPSAKPNDS 687
Query: 573 STGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAV-GEH 623
+ L A + V V W RLL+AS GL + G H
Sbjct: 688 DLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSH 739
>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
[Homo sapiens]
Length = 829
Score = 831 bits (2146), Expect = 0.0
Identities = 417/615 (67%), Positives = 496/615 (80%)
Query: 12 RLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRG 71
R L LLC LGTL + QIRYSV EE +KGSFVGNI+ DLGLEPRELA+RGVRIVSRG
Sbjct: 11 RGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRG 70
Query: 72 KTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNA 131
+TQLF++NP+SGSL+TA RIDREELC + C + + +LVED LKI+ VE+EI DINDNA
Sbjct: 71 RTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNA 130
Query: 132 PSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAK 191
P+F +E+EIK+ E +PG RF + A DPDVG+NSLQ+Y+LSPN+YFSL + ++GAK
Sbjct: 131 PNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAK 190
Query: 192 NPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVS 251
PELVLE +LDREK+ H L+L A DGGDP+ G + I+V+VLD ND+ PMFTQ YRVS
Sbjct: 191 YPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVS 250
Query: 252 VPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFE 311
V EN+ GTR+L VNATDPDEG N +V Y M K +EIF L+S +GEV + SLD+E
Sbjct: 251 VWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYE 310
Query: 312 KYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLN 371
FYE++I+ QDG GL + +L+TV+DVNDNAPEITITS +S+ E G IAL++
Sbjct: 311 DAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALID 370
Query: 372 VQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSP 431
V D+DSG+NGQV F+ +LPFKLEK+ YY+L+T+ LDRE + YNI+L A+D GSP
Sbjct: 371 VHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSP 430
Query: 432 PLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYS 491
PLS ETH+ L+V D NDNPP FPH SYSAYIPENNPRGASIFSVTA DPDS NA +TY+
Sbjct: 431 PLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYA 490
Query: 492 LTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSL 551
LT+DT+QG PLSS+VSINSNTGVLYAL+SFDYEQFRDL+L V A DSG+PPLSSNVSL+L
Sbjct: 491 LTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNL 550
Query: 552 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLK 611
FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLK
Sbjct: 551 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610
Query: 612 ASEPGLFAVGEHTGE 626
ASEPGLF+VG HTGE
Sbjct: 611 ASEPGLFSVGLHTGE 625
Score = 171 bits (433), Expect = 2e-42
Identities = 158/532 (29%), Positives = 233/532 (43%), Gaps = 48/532 (9%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLS--PNN 177
++V ++D NDN P F + E + V E+ G R NA DPD G N+ SY L P
Sbjct: 228 IQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGK 287
Query: 178 YFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVN 237
+ G E+ + SLD E + + + A DG P I V VLDVN
Sbjct: 288 IAEIFHLNSVSG----EVSILKSLDYEDAMFYEIKIEAQDG--PGLLSRAKILVTVLDVN 341
Query: 238 DHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEV-MYSFRNMESKASEIFQLD 296
D+ P T + SVPE + G + +++ D D G NG+V ++ N+ K +
Sbjct: 342 DNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSID-- 399
Query: 297 SQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSI 354
Q + SLD E+ Y + ++ DGG L T T + + V+D+NDN P S
Sbjct: 400 -QYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYS 458
Query: 355 NSILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLI 406
I EN+P G I + QD DS N +++ + P + G Y L
Sbjct: 459 AYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLYAL- 517
Query: 407 TSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYS 459
R D E + + +TA+D G+PPLS+ + L V D NDN P ++P S+
Sbjct: 518 --RSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGV 575
Query: 460 AYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQ 519
P + G + V A+D DS QNA ++Y L + G+ S+ +TG + +
Sbjct: 576 ELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGEVRTAR 630
Query: 520 SFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILY-------PALPTDG 572
+ L V +D G PPLS+ V+L++ V D+ P+IL A P D
Sbjct: 631 ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADR---IPDILADLGSLEPSAKPNDS 687
Query: 573 STGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAV-GEH 623
+ L A + V V W RLL+AS GL + G H
Sbjct: 688 DLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSH 739
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 828 bits (2139), Expect = 0.0
Identities = 418/626 (66%), Positives = 497/626 (79%), Gaps = 1/626 (0%)
Query: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
MA + RS +LLL + LGTL G A QIRYS+PEE EKGSFVGNI KDLGLEP+EL
Sbjct: 1 MAPPQRHPQRSEQVLLLTL-LGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQEL 59
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
A+ GVRIVSRG+ QLF++NPR+GSL+TAGRIDREELC C ++ +LVED L +Y V
Sbjct: 60 AEHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPV 119
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
EVEI+DINDN P F ++E+E+K+ E+A P +RF L DPDVG+NSLQ ++LS N++FS
Sbjct: 120 EVEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFS 179
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
+ ++ G K PELVLEG+LDRE EA + L+LTA+DGGDP+R I V VLDVND+
Sbjct: 180 VDVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNT 239
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
PMFTQ VYRVSVPEN+ GT VL V ATD DEG++GEV YSF + K S+IF L+ TG
Sbjct: 240 PMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTG 299
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
E+ +LD+E FYE+ ++ +DG GL +LIT++DVNDN PE+ +TS +I E+
Sbjct: 300 EISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAES 359
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
+PPGTVIAL V D+DSG NG V+C IP LPF+LEK+ GNYY+L+T+ LDRE V YN
Sbjct: 360 APPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYN 419
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
IT+TATD+G+PPLS ET + LNVAD NDNPP FPHSSYS Y+ ENNPRGASIFSV ALDP
Sbjct: 420 ITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDP 479
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
D QNA V+YSL +DT+QG PLSSYVSINS+TG+LYAL+SFDYEQ RDL+L V A DSGD
Sbjct: 480 DVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGD 539
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSG 599
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
QNAWLSYRLLKASEPGLF+VG HTGE
Sbjct: 600 QNAWLSYRLLKASEPGLFSVGLHTGE 625
Score = 360 bits (924), Expect = 3e-99
Identities = 277/738 (37%), Positives = 378/738 (51%), Gaps = 73/738 (9%)
Query: 33 RYSVPEETEKGSFVGNIS---KDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAG 89
R SVPE G+ V ++ +D G+ E+ V+I + +Q+F +N +G + T+
Sbjct: 248 RVSVPENLPVGTPVLAVTATDQDEGVHG-EVTYSFVKITEK-ISQIFCLNVLTGEISTSA 305
Query: 90 RIDREELCETVSSCFLNMELLVEDTLKIYG---VEVEIIDINDNAPSFQEDEVEIKVSEH 146
+D E+ S F + + D + V + I+D+NDN P ++E
Sbjct: 306 NLDYED------SSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAES 359
Query: 147 AIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKE 206
A PG AL D D G+N L + + + F L+ LV +LDRE+
Sbjct: 360 APPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELE----KSVGNYYRLVTNAALDREEV 415
Query: 207 AAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVN 266
+ + +TA D G P I + V D ND+ P F S Y V V EN G + VN
Sbjct: 416 FLYNITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVN 475
Query: 267 ATDPDEGINGEVMYSFRN---MESKASEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQ 323
A DPD N +V YS + S ++S TG + S D+E+ R ++ +
Sbjct: 476 ALDPDVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTAS 535
Query: 324 DGGG--LFTTTTMLITVVDVNDNAPEITI-------TSSINSILENSPPGTVIALLNVQD 374
D G L + ++ + V+D NDNAPEI ++ + ++ PG ++ + D
Sbjct: 536 DSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD 595
Query: 375 QDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSR-VLDRELVQSYNITLTATDQGSPPL 433
+DSG+N +S + L + ++ T+R +LDR+ ++ ++ + D G PPL
Sbjct: 596 RDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQ-SLVVAVQDHGQPPL 654
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
SA V L VA + P + + + +L+P +K N LT
Sbjct: 655 SAT--VTLTVAVADRIPDI-------------------LADLGSLEPSAKPN---DSDLT 690
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
V V S V + + VL AL+ + + R L+ P S V +
Sbjct: 691 LYLVVAVAAVSCVFL-AFVIVLLALRLQRWHKSRLLQAS--GGGLASMPGSHFVGVEGVR 747
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
+ E+ +L D + P +P Y T + + + ++ LL+
Sbjct: 748 AFLQTYSHEV---SLTADSRKSHLIFP---QPNYADTLINQESYEKSEPLLITQDLLETK 801
Query: 614 -EPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA 672
EP +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA
Sbjct: 802 GEPRQL-------QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA 854
Query: 673 SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK 732
SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
Sbjct: 855 SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK 914
Query: 733 APAGGNGNKKKSGKKEKK 750
APAGGNGNKKKSGKKEKK
Sbjct: 915 APAGGNGNKKKSGKKEKK 932
Score = 152 bits (385), Expect = 8e-37
Identities = 159/581 (27%), Positives = 243/581 (41%), Gaps = 61/581 (10%)
Query: 77 AVNPRSGSLITAGRIDREELCETVSSCFLN-MELLVEDTLKIYGVEVEIIDINDNAPSFQ 135
A P+ L+ G +DRE E V L M+ + + V ++D+NDN P F
Sbjct: 186 AHGPKYPELVLEGTLDREG--EAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFT 243
Query: 136 EDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSP-----NNYFSLQLRGRTDGA 190
+ + V E+ G A D D GV+ +Y + F L +
Sbjct: 244 QPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVL------ 297
Query: 191 KNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRV 250
E+ +LD E + + L + A DG P + + + +LDVND++P +
Sbjct: 298 -TGEISTSANLDYEDSSFYELGVEARDG--PGLRDRAKVLITILDVNDNVPEVVVTSGSR 354
Query: 251 SVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGE---VQVRGS 307
++ E+ GT + + D D G+NG V S S F+L+ G + +
Sbjct: 355 TIAESAPPGTVIALFQVFDRDSGLNGLVTCSIPR-----SLPFELEKSVGNYYRLVTNAA 409
Query: 308 LDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGT 365
LD E+ Y + + D G L T T + + V D NDN P +S +LEN+P G
Sbjct: 410 LDREEVFLYNITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGA 469
Query: 366 VIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQ 417
I +N D D +N QVS + P + G Y L R D E ++
Sbjct: 470 SIFSVNALDPDVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYAL---RSFDYEQLR 526
Query: 418 SYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGA 470
+ +TA+D G PPLS+ + L V D NDN P ++P S+ P + G
Sbjct: 527 DLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGY 586
Query: 471 SIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLE 530
+ V A+D DS QNA ++Y L + G+ S+ +TG + ++
Sbjct: 587 LVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGEVRTARALLDRDALKQS 641
Query: 531 LRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILY-------PALPTDGSTGVELAPRSA 583
L V +D G PPLS+ V+L++ V D+ P+IL A P D + L A
Sbjct: 642 LVVAVQDHGQPPLSATVTLTVAVADR---IPDILADLGSLEPSAKPNDSDLTLYLVVAVA 698
Query: 584 EPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAV-GEH 623
+ V V W RLL+AS GL ++ G H
Sbjct: 699 AVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGLASMPGSH 739
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 828 bits (2139), Expect = 0.0
Identities = 418/626 (66%), Positives = 497/626 (79%), Gaps = 1/626 (0%)
Query: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
MA + RS +LLL + LGTL G A QIRYS+PEE EKGSFVGNI KDLGLEP+EL
Sbjct: 1 MAPPQRHPQRSEQVLLLTL-LGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQEL 59
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
A+ GVRIVSRG+ QLF++NPR+GSL+TAGRIDREELC C ++ +LVED L +Y V
Sbjct: 60 AEHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPV 119
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
EVEI+DINDN P F ++E+E+K+ E+A P +RF L DPDVG+NSLQ ++LS N++FS
Sbjct: 120 EVEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFS 179
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
+ ++ G K PELVLEG+LDRE EA + L+LTA+DGGDP+R I V VLDVND+
Sbjct: 180 VDVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNT 239
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
PMFTQ VYRVSVPEN+ GT VL V ATD DEG++GEV YSF + K S+IF L+ TG
Sbjct: 240 PMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTG 299
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
E+ +LD+E FYE+ ++ +DG GL +LIT++DVNDN PE+ +TS +I E+
Sbjct: 300 EISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAES 359
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
+PPGTVIAL V D+DSG NG V+C IP LPF+LEK+ GNYY+L+T+ LDRE V YN
Sbjct: 360 APPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYN 419
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
IT+TATD+G+PPLS ET + LNVAD NDNPP FPHSSYS Y+ ENNPRGASIFSV ALDP
Sbjct: 420 ITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDP 479
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
D QNA V+YSL +DT+QG PLSSYVSINS+TG+LYAL+SFDYEQ RDL+L V A DSGD
Sbjct: 480 DVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGD 539
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSG 599
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
QNAWLSYRLLKASEPGLF+VG HTGE
Sbjct: 600 QNAWLSYRLLKASEPGLFSVGLHTGE 625
Score = 152 bits (385), Expect = 8e-37
Identities = 159/581 (27%), Positives = 243/581 (41%), Gaps = 61/581 (10%)
Query: 77 AVNPRSGSLITAGRIDREELCETVSSCFLN-MELLVEDTLKIYGVEVEIIDINDNAPSFQ 135
A P+ L+ G +DRE E V L M+ + + V ++D+NDN P F
Sbjct: 186 AHGPKYPELVLEGTLDREG--EAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFT 243
Query: 136 EDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSP-----NNYFSLQLRGRTDGA 190
+ + V E+ G A D D GV+ +Y + F L +
Sbjct: 244 QPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVL------ 297
Query: 191 KNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRV 250
E+ +LD E + + L + A DG P + + + +LDVND++P +
Sbjct: 298 -TGEISTSANLDYEDSSFYELGVEARDG--PGLRDRAKVLITILDVNDNVPEVVVTSGSR 354
Query: 251 SVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGE---VQVRGS 307
++ E+ GT + + D D G+NG V S S F+L+ G + +
Sbjct: 355 TIAESAPPGTVIALFQVFDRDSGLNGLVTCSIPR-----SLPFELEKSVGNYYRLVTNAA 409
Query: 308 LDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGT 365
LD E+ Y + + D G L T T + + V D NDN P +S +LEN+P G
Sbjct: 410 LDREEVFLYNITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGA 469
Query: 366 VIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQ 417
I +N D D +N QVS + P + G Y L R D E ++
Sbjct: 470 SIFSVNALDPDVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYAL---RSFDYEQLR 526
Query: 418 SYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGA 470
+ +TA+D G PPLS+ + L V D NDN P ++P S+ P + G
Sbjct: 527 DLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGY 586
Query: 471 SIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLE 530
+ V A+D DS QNA ++Y L + G+ S+ +TG + ++
Sbjct: 587 LVTKVVAVDRDSGQNAWLSYRLLKASEPGL-----FSVGLHTGEVRTARALLDRDALKQS 641
Query: 531 LRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILY-------PALPTDGSTGVELAPRSA 583
L V +D G PPLS+ V+L++ V D+ P+IL A P D + L A
Sbjct: 642 LVVAVQDHGQPPLSATVTLTVAVADR---IPDILADLGSLEPSAKPNDSDLTLYLVVAVA 698
Query: 584 EPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAV-GEH 623
+ V V W RLL+AS GL ++ G H
Sbjct: 699 AVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGLASMPGSH 739
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 822 bits (2122), Expect = 0.0
Identities = 412/620 (66%), Positives = 492/620 (79%)
Query: 7 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 66
RG R LL I LGT A +I YSV EET+KGSFVG+I+KDLGLEPRELA+RGVR
Sbjct: 6 RGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVR 65
Query: 67 IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
I+SRG+TQLFA+N RSGSL+TAGRIDREE+C + C +N +L+ED + +Y ++VEIID
Sbjct: 66 IISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIID 125
Query: 127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
INDN P F +E+ +K+ E+ PG RF L A DPDVG NSLQSYQLSPN +FSL ++
Sbjct: 126 INDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSG 185
Query: 187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
D K PELVLE LDRE+E H L+LTA DGGDP R I+V V+DVNDH P+F+
Sbjct: 186 DDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLP 245
Query: 247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
Y+V+VPEN+ GTR+L V+A D DEG+NGEV YSFR + K ++F L+S TGE+
Sbjct: 246 QYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLE 305
Query: 307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
LD+E+ FYEME+Q QDG G T +LITV+DVNDNAPE+T+TS +SI E++P GTV
Sbjct: 306 GLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTV 365
Query: 367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
IAL +QD+DSG+NG+V+C IP +LPFKLEK+ NYY+L+T++ LDRE + YNITL AT
Sbjct: 366 IALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKAT 425
Query: 427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
D G+PPLS ETH+++ VAD NDNPP FPHSSYS YI ENNPRGASIF VTA D DS+ NA
Sbjct: 426 DGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNA 485
Query: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
+TYSL +DT+QG P+SSYVSINS+TGVLYALQSFDYEQ R+L+LRV A DSGDPPLSSN
Sbjct: 486 QITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSN 545
Query: 547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
+SLSLFVLDQNDN PEILYPALPTDGSTG+ELAPRSAEPGYLVTKVVAVDKDSGQNAWLS
Sbjct: 546 MSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 605
Query: 607 YRLLKASEPGLFAVGEHTGE 626
Y LLKASEPGLFAVG +TGE
Sbjct: 606 YLLLKASEPGLFAVGLYTGE 625
Score = 358 bits (920), Expect = 8e-99
Identities = 277/746 (37%), Positives = 379/746 (50%), Gaps = 77/746 (10%)
Query: 27 FRARQIRYSVPEETEKGS---FVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSG 83
F Q + +VPE G+ V I D G+ R ++ ++F +N +G
Sbjct: 242 FSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGE--VTYSFRKITPKLPKMFHLNSLTG 299
Query: 84 SLITAGRIDREELCETVSSCFLNMELLVED---TLKIYGVEVEIIDINDNAPSFQEDEVE 140
+ T +D EE + F ME+ +D +L V + ++D+NDNAP +
Sbjct: 300 EISTLEGLDYEE------TAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLS 353
Query: 141 IKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGS 200
+ E G AL +D D G N + + N F L+ LV +
Sbjct: 354 SSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLE----KSIDNYYRLVTTKN 409
Query: 201 LDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGT 260
LDRE + + + L A DGG P I + V D ND+ P F S Y V + EN G
Sbjct: 410 LDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGA 469
Query: 261 RVLMVNATDPDEGINGEVMYSFRN---MESKASEIFQLDSQTGEVQVRGSLDFEKYRFYE 317
+ +V A D D N ++ YS + S ++S TG + S D+E+ R +
Sbjct: 470 SIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQ 529
Query: 318 MEIQGQDGGG--LFTTTTMLITVVDVNDNAPEI---TITSSINSILENSP----PGTVIA 368
+ + D G L + ++ + V+D NDN PEI + + ++ +E +P PG ++
Sbjct: 530 LRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVT 589
Query: 369 LLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSR-VLDRELVQSYNITLTATD 427
+ D+DSG+N +S + L ++ T+R +LDR+ ++ ++ + D
Sbjct: 590 KVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQ-SLVVAVQD 648
Query: 428 QGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNAL 487
G PPLSA + + VAD IPE + + +L+P +
Sbjct: 649 HGQPPLSATVTLTVAVADS---------------IPE------VLADLGSLEPS---DGP 684
Query: 488 VTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNV 547
Y LT V V S V + + VL AL+ + + R L+ A + G +NV
Sbjct: 685 YNYDLTLYLVVAVATVSCVFL-AFVLVLLALRLRRWHKSRLLQ----ASEGG----LANV 735
Query: 548 SLSLFVLDQNDNAPEILYP---ALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAW 604
S FV A Y +L D + P+ L+++ DS +
Sbjct: 736 PTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEKNDSLLTS- 794
Query: 605 LSYRLLKASEPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 664
+ ++ K + P + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 795 VDFQECKENLPSI--------QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 846
Query: 665 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 724
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 847 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 906
Query: 725 AAGKRDGKAPAGGNGNKKKSGKKEKK 750
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 AAGKRDGKAPAGGNGNKKKSGKKEKK 932
Score = 165 bits (417), Expect = 2e-40
Identities = 156/529 (29%), Positives = 232/529 (43%), Gaps = 55/529 (10%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSY---QLSPN 176
++V ++D+ND+ P F + ++ V E+ G R +A D D GVN +Y +++P
Sbjct: 228 IQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPK 287
Query: 177 NYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDV 236
L T LEG LD E+ A + + + A DG + K V I VLDV
Sbjct: 288 LPKMFHLNSLTGEIST----LEG-LDYEETAFYEMEVQAQDGPGSLTKAKVLI--TVLDV 340
Query: 237 NDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSF-RNMESKASEIFQL 295
ND+ P T + S+PE+ GT + + D D G NGEV + N+ K + +
Sbjct: 341 NDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEK--SI 398
Query: 296 DSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSS 353
D+ V + +LD E Y + ++ DGG L T + + V D NDN P +S
Sbjct: 399 DNYYRLVTTK-NLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSY 457
Query: 354 INSILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKL 405
I EN+P G I L+ QD DS +N Q++ + P + G Y L
Sbjct: 458 SVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYAL 517
Query: 406 ITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSY 458
+ D E ++ + +TA D G PPLS+ + L V D NDNPP ++P S+
Sbjct: 518 ---QSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTG 574
Query: 459 SAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYAL 518
P + G + V A+D DS QNA ++Y L + G+ ++ TG +
Sbjct: 575 MELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGL-----FAVGLYTGEVRTA 629
Query: 519 QSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVEL 578
++ L V +D G PPLS+ V+L++ V D L P+DG +L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSDGPYNYDL 689
Query: 579 APRSAEPGYLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGL 617
YLV V V W RLL+ASE GL
Sbjct: 690 TL------YLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGL 732
>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
[Homo sapiens]
Length = 817
Score = 822 bits (2122), Expect = 0.0
Identities = 412/620 (66%), Positives = 492/620 (79%)
Query: 7 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 66
RG R LL I LGT A +I YSV EET+KGSFVG+I+KDLGLEPRELA+RGVR
Sbjct: 6 RGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVR 65
Query: 67 IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
I+SRG+TQLFA+N RSGSL+TAGRIDREE+C + C +N +L+ED + +Y ++VEIID
Sbjct: 66 IISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIID 125
Query: 127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
INDN P F +E+ +K+ E+ PG RF L A DPDVG NSLQSYQLSPN +FSL ++
Sbjct: 126 INDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSG 185
Query: 187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
D K PELVLE LDRE+E H L+LTA DGGDP R I+V V+DVNDH P+F+
Sbjct: 186 DDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLP 245
Query: 247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
Y+V+VPEN+ GTR+L V+A D DEG+NGEV YSFR + K ++F L+S TGE+
Sbjct: 246 QYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLE 305
Query: 307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
LD+E+ FYEME+Q QDG G T +LITV+DVNDNAPE+T+TS +SI E++P GTV
Sbjct: 306 GLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTV 365
Query: 367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
IAL +QD+DSG+NG+V+C IP +LPFKLEK+ NYY+L+T++ LDRE + YNITL AT
Sbjct: 366 IALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKAT 425
Query: 427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
D G+PPLS ETH+++ VAD NDNPP FPHSSYS YI ENNPRGASIF VTA D DS+ NA
Sbjct: 426 DGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNA 485
Query: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
+TYSL +DT+QG P+SSYVSINS+TGVLYALQSFDYEQ R+L+LRV A DSGDPPLSSN
Sbjct: 486 QITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSN 545
Query: 547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
+SLSLFVLDQNDN PEILYPALPTDGSTG+ELAPRSAEPGYLVTKVVAVDKDSGQNAWLS
Sbjct: 546 MSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 605
Query: 607 YRLLKASEPGLFAVGEHTGE 626
Y LLKASEPGLFAVG +TGE
Sbjct: 606 YLLLKASEPGLFAVGLYTGE 625
Score = 165 bits (417), Expect = 2e-40
Identities = 156/529 (29%), Positives = 232/529 (43%), Gaps = 55/529 (10%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSY---QLSPN 176
++V ++D+ND+ P F + ++ V E+ G R +A D D GVN +Y +++P
Sbjct: 228 IQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPK 287
Query: 177 NYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDV 236
L T LEG LD E+ A + + + A DG + K V I VLDV
Sbjct: 288 LPKMFHLNSLTGEIST----LEG-LDYEETAFYEMEVQAQDGPGSLTKAKVLI--TVLDV 340
Query: 237 NDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSF-RNMESKASEIFQL 295
ND+ P T + S+PE+ GT + + D D G NGEV + N+ K + +
Sbjct: 341 NDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEK--SI 398
Query: 296 DSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSS 353
D+ V + +LD E Y + ++ DGG L T + + V D NDN P +S
Sbjct: 399 DNYYRLVTTK-NLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSY 457
Query: 354 INSILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKL 405
I EN+P G I L+ QD DS +N Q++ + P + G Y L
Sbjct: 458 SVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYAL 517
Query: 406 ITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSY 458
+ D E ++ + +TA D G PPLS+ + L V D NDNPP ++P S+
Sbjct: 518 ---QSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTG 574
Query: 459 SAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYAL 518
P + G + V A+D DS QNA ++Y L + G+ ++ TG +
Sbjct: 575 MELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGL-----FAVGLYTGEVRTA 629
Query: 519 QSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVEL 578
++ L V +D G PPLS+ V+L++ V D L P+DG +L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSDGPYNYDL 689
Query: 579 APRSAEPGYLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGL 617
YLV V V W RLL+ASE GL
Sbjct: 690 TL------YLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGL 732
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 812 bits (2097), Expect = 0.0
Identities = 405/613 (66%), Positives = 485/613 (79%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
L+LLC LG L RA QIRYSVPEETEKG VGNISKDL LEPRELA+R VRIVSRG+T
Sbjct: 13 LVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRT 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
QLF++NPRSG+L+TAGRIDREELC C +N ++LVED +K+YG+E+E+ DIND+AP
Sbjct: 73 QLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPK 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
FQ + +E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL ++ +GA NP
Sbjct: 133 FQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
ELVLE +LDRE+ AH L+LTA DGG+P R V I V VLD ND+ P+F Q +YRV V
Sbjct: 193 ELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVL 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
EN+ GT +L A+D DEGING+V Y F + K S +FQL+ TGE+ SLD+E+
Sbjct: 253 ENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEEC 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
FYEMEIQ +DGGGL T +LI+V DVNDN PE+TITS + + E++P GTVI L N
Sbjct: 313 SFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAH 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
D+DSG+NGQV C I +L F LE + +YY+L+T+++LDRE YNIT+TATD+G+PPL
Sbjct: 373 DRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S E H+ L V D NDNPP F +SYS Y+PENN RG SIFSV A DPDS +N+ V YSL
Sbjct: 433 STEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLA 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
+DT+QG PLS+YVSINS+TGVLYAL SFDYEQFRDL+++V A DSG PPLSSNVSL LFV
Sbjct: 493 EDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFV 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRL KAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLF+VG HTGE
Sbjct: 613 EPGLFSVGLHTGE 625
Score = 377 bits (967), Expect = e-104
Identities = 269/717 (37%), Positives = 363/717 (50%), Gaps = 102/717 (14%)
Query: 68 VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYG---VEVEI 124
++ ++ LF +N +G + TA +D EE F ME+ ED + G V + +
Sbjct: 284 INEKQSLLFQLNENTGEISTAKSLDYEECS------FYEMEIQAEDGGGLKGWTKVLISV 337
Query: 125 IDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLR 184
D+NDN P + V E A G L NA D D G N + N F+L+
Sbjct: 338 EDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLE-- 395
Query: 185 GRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFT 244
L+ LDREK + + + +TA D G P + I + V D+ND+ P F+
Sbjct: 396 --NSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLSTEIHITLQVTDINDNPPAFS 453
Query: 245 QSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRN---MESKASEIFQLDSQTGE 301
Q+ Y V +PEN + GT + V A DPD N V+YS S S ++S TG
Sbjct: 454 QASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAEDTIQGSPLSTYVSINSDTGV 513
Query: 302 VQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITI-------TS 352
+ S D+E++R +M++ D G L + ++ + V+D NDNAPEI ++
Sbjct: 514 LYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVLDQNDNAPEILYPALPTDGST 573
Query: 353 SINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSR-VL 411
+ ++ PG ++ + D+DSG+N +S + L + ++ T+R +L
Sbjct: 574 GVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASEPGLFSVGLHTGEVRTARALL 633
Query: 412 DRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPEN-NPRGA 470
DR+ ++ ++ + D G PPLSA + + +A D+ P S IP +
Sbjct: 634 DRDALKQ-SLVVAVQDHGQPPLSATVTLTVAIA---DSIPDILADLGSLQIPADLEASDL 689
Query: 471 SIFSVTALDPDSKQNALVTYSL----------------TDDTVQGVPLSSYVSINSNTGV 514
+++ V A+ S +L T D + GVP S +V ++ GV
Sbjct: 690 TLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDGLAGVPTSHFVGVD---GV 746
Query: 515 LYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGST 574
LQ++ E F L + +++P
Sbjct: 747 RAFLQTYSQE---------------------------FSLTADSRKSHLIFP-------- 771
Query: 575 GVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGEHT-GEQAPPNTD 633
+P Y T + Q + L S F + + QAPPNTD
Sbjct: 772 ---------QPNYADTLI-------SQQSCEKNEPLCVSVDSKFPIEDTPLVPQAPPNTD 815
Query: 634 WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL 693
WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL
Sbjct: 816 WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL 875
Query: 694 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 750
SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 876 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
Score = 155 bits (392), Expect = 1e-37
Identities = 160/559 (28%), Positives = 248/559 (44%), Gaps = 64/559 (11%)
Query: 33 RYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAGRID 92
RY +PE + V ++ + L P V+ G A+NP L+ +D
Sbjct: 151 RYPLPEAIDPDVGVNSL-QSYQLSPNHHFSLNVQTGDNG-----AINPE---LVLERALD 201
Query: 93 REELC--ETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQEDEVEIKVSEHAIPG 150
REE V + E T++I+ V ++D NDNAP F + +KV E+ PG
Sbjct: 202 REEATAHHLVLTASDGGEPRRSSTVRIH---VTVLDTNDNAPVFAQRIYRVKVLENVPPG 258
Query: 151 ARFALPNARDPDVGVNSLQSYQ---LSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEA 207
A D D G+N +Y+ ++ QL T E+ SLD E+ +
Sbjct: 259 TWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTG-----EISTAKSLDYEECS 313
Query: 208 AHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNA 267
+ + + A DGG KG + + V DVND+ P T + V E+ GT +L+ NA
Sbjct: 314 FYEMEIQAEDGGG--LKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371
Query: 268 TDPDEGINGEVMYSFRN-----MESKASEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQG 322
D D G NG+V+ S + +E+ + ++L T ++ LD EK Y + +
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRL--LTAQI-----LDREKASEYNITVTA 424
Query: 323 QDGGGLFTTTTMLIT--VVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQDSGEN 380
D G +T + IT V D+NDN P + S + EN+ GT I + D DS EN
Sbjct: 425 TDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNEN 484
Query: 381 GQVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPP 432
+V + P + G Y L + D E + + +TA+D GSPP
Sbjct: 485 SRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCS---FDYEQFRDLQMQVTASDSGSPP 541
Query: 433 LSAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGASIFSVTALDPDSKQN 485
LS+ + L V D NDN P ++P S+ P + G + V A+D DS QN
Sbjct: 542 LSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQN 601
Query: 486 ALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSS 545
A ++Y L + G+ S+ +TG + ++ L V +D G PPLS+
Sbjct: 602 AWLSYRLFKASEPGL-----FSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSA 656
Query: 546 NVSLSLFVLDQNDNAPEIL 564
V+L++ + D+ P+IL
Sbjct: 657 TVTLTVAIA---DSIPDIL 672
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 812 bits (2097), Expect = 0.0
Identities = 405/613 (66%), Positives = 485/613 (79%)
Query: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
L+LLC LG L RA QIRYSVPEETEKG VGNISKDL LEPRELA+R VRIVSRG+T
Sbjct: 13 LVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRT 72
Query: 74 QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
QLF++NPRSG+L+TAGRIDREELC C +N ++LVED +K+YG+E+E+ DIND+AP
Sbjct: 73 QLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPK 132
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
FQ + +E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL ++ +GA NP
Sbjct: 133 FQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINP 192
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
ELVLE +LDRE+ AH L+LTA DGG+P R V I V VLD ND+ P+F Q +YRV V
Sbjct: 193 ELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVL 252
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
EN+ GT +L A+D DEGING+V Y F + K S +FQL+ TGE+ SLD+E+
Sbjct: 253 ENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEEC 312
Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
FYEMEIQ +DGGGL T +LI+V DVNDN PE+TITS + + E++P GTVI L N
Sbjct: 313 SFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAH 372
Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
D+DSG+NGQV C I +L F LE + +YY+L+T+++LDRE YNIT+TATD+G+PPL
Sbjct: 373 DRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPL 432
Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
S E H+ L V D NDNPP F +SYS Y+PENN RG SIFSV A DPDS +N+ V YSL
Sbjct: 433 STEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLA 492
Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
+DT+QG PLS+YVSINS+TGVLYAL SFDYEQFRDL+++V A DSG PPLSSNVSL LFV
Sbjct: 493 EDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFV 552
Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRL KAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKAS 612
Query: 614 EPGLFAVGEHTGE 626
EPGLF+VG HTGE
Sbjct: 613 EPGLFSVGLHTGE 625
Score = 155 bits (392), Expect = 1e-37
Identities = 160/559 (28%), Positives = 248/559 (44%), Gaps = 64/559 (11%)
Query: 33 RYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAGRID 92
RY +PE + V ++ + L P V+ G A+NP L+ +D
Sbjct: 151 RYPLPEAIDPDVGVNSL-QSYQLSPNHHFSLNVQTGDNG-----AINPE---LVLERALD 201
Query: 93 REELC--ETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQEDEVEIKVSEHAIPG 150
REE V + E T++I+ V ++D NDNAP F + +KV E+ PG
Sbjct: 202 REEATAHHLVLTASDGGEPRRSSTVRIH---VTVLDTNDNAPVFAQRIYRVKVLENVPPG 258
Query: 151 ARFALPNARDPDVGVNSLQSYQ---LSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEA 207
A D D G+N +Y+ ++ QL T E+ SLD E+ +
Sbjct: 259 TWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTG-----EISTAKSLDYEECS 313
Query: 208 AHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNA 267
+ + + A DGG KG + + V DVND+ P T + V E+ GT +L+ NA
Sbjct: 314 FYEMEIQAEDGGG--LKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371
Query: 268 TDPDEGINGEVMYSFRN-----MESKASEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQG 322
D D G NG+V+ S + +E+ + ++L T ++ LD EK Y + +
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRL--LTAQI-----LDREKASEYNITVTA 424
Query: 323 QDGGGLFTTTTMLIT--VVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQDSGEN 380
D G +T + IT V D+NDN P + S + EN+ GT I + D DS EN
Sbjct: 425 TDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNEN 484
Query: 381 GQVSCFI--------PNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPP 432
+V + P + G Y L + D E + + +TA+D GSPP
Sbjct: 485 SRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCS---FDYEQFRDLQMQVTASDSGSPP 541
Query: 433 LSAETHVWLNVADDNDNPP--VFPH-----SSYSAYIPENNPRGASIFSVTALDPDSKQN 485
LS+ + L V D NDN P ++P S+ P + G + V A+D DS QN
Sbjct: 542 LSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQN 601
Query: 486 ALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSS 545
A ++Y L + G+ S+ +TG + ++ L V +D G PPLS+
Sbjct: 602 AWLSYRLFKASEPGL-----FSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSA 656
Query: 546 NVSLSLFVLDQNDNAPEIL 564
V+L++ + D+ P+IL
Sbjct: 657 TVTLTVAIA---DSIPDIL 672
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 798 bits (2061), Expect = 0.0
Identities = 403/622 (64%), Positives = 479/622 (77%)
Query: 5 LQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRG 64
LQ+ R L+LLC L TL RA QIRYSV EE ++GSFVGNI+KDLGLEP LA++G
Sbjct: 4 LQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQG 63
Query: 65 VRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEI 124
VRIVSRG++QLFA+NPRSGSL+TA RIDREELC + C LN +L+ED L IY VEVEI
Sbjct: 64 VRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEI 123
Query: 125 IDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLR 184
DINDNAP F +E+E+K+SE PG R L NA D DVG N+LQ Y L+PN++FSL +R
Sbjct: 124 TDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVR 183
Query: 185 GRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFT 244
DG K PELVLE SLDRE+EA H L+L A DGGDP+ G I V VLD ND+ P+FT
Sbjct: 184 RGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFT 243
Query: 245 QSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQV 304
Q YR+S+PEN GTR+L V ATD DEG +V+Y + SE+F+L S +GE+ +
Sbjct: 244 QPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTI 303
Query: 305 RGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPG 364
LD+E F+E++I+ QDG GL T +++TV+DVNDNAPE +TS+ +S+ E+S PG
Sbjct: 304 IKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPG 363
Query: 365 TVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLT 424
T+I L NV D+DSG+N +C +P LPFKLEK+ NYY+L+T+R LDRE YNITLT
Sbjct: 364 TIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLT 423
Query: 425 ATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQ 484
A D G+P LS + H+ L VAD NDN P F +SYS YIPENNPRGAS+FSVTA DPDS
Sbjct: 424 AKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSND 483
Query: 485 NALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLS 544
NA VTYS +DTVQG PLSSY+SINS+TGVLYAL+SFDYEQ RDL++ VIARDSG+PPLS
Sbjct: 484 NAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLS 543
Query: 545 SNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAW 604
SNVSLSLFVLDQNDNAPEILYPA PTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAW
Sbjct: 544 SNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAW 603
Query: 605 LSYRLLKASEPGLFAVGEHTGE 626
LSY LLKASEPGLF+VG HTGE
Sbjct: 604 LSYHLLKASEPGLFSVGLHTGE 625
Score = 259 bits (663), Expect = 5e-69
Identities = 125/129 (96%), Positives = 126/129 (97%)
Query: 622 EHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 681
E +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS
Sbjct: 804 ETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 863
Query: 682 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 741
STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK
Sbjct: 864 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 923
Query: 742 KKSGKKEKK 750
KKSGKKEKK
Sbjct: 924 KKSGKKEKK 932
Score = 163 bits (413), Expect = 5e-40
Identities = 152/519 (29%), Positives = 225/519 (43%), Gaps = 47/519 (9%)
Query: 122 VEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL--SPNNYF 179
V+++D NDNAP F + E I + E+ + G R A D D G + Y L SP
Sbjct: 230 VKVLDANDNAPVFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETS 289
Query: 180 SLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDH 239
+ T G EL + LD E H + + A DG + + V V VLDVND+
Sbjct: 290 EVFELKSTSG----ELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVI--VTVLDVNDN 343
Query: 240 IPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSF-RNMESKASEIFQLDSQ 298
P F + SV E+ GT + + N D D G N S ++ K + +D+
Sbjct: 344 APEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEK--SVDNY 401
Query: 299 TGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINS 356
V R +LD E++ FY + + +DGG L T +L+ V D+NDNAP + TS
Sbjct: 402 YRLVTTR-ALDREQFSFYNITLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTY 460
Query: 357 ILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITS 408
I EN+P G + + D DS +N V+ P + G Y L
Sbjct: 461 IPENNPRGASVFSVTAHDPDSNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYAL--- 517
Query: 409 RVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSA-------Y 461
R D E ++ + + A D G+PPLS+ + L V D NDN P + ++
Sbjct: 518 RSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVEL 577
Query: 462 IPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSF 521
P + G + V A+D DS QNA ++Y L + G+ S+ +TG + ++
Sbjct: 578 APRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGL-----FSVGLHTGEVRTARAL 632
Query: 522 DYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILY-------PALPTDGST 574
L V +D G PPLS+ V+L++ V D+ P+IL A+P D
Sbjct: 633 LDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADR---IPDILADLGSLEPSAIPNDSDL 689
Query: 575 GVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
+ L A + V V W RLL+AS
Sbjct: 690 TLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 728
>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 798 bits (2061), Expect = 0.0
Identities = 403/622 (64%), Positives = 479/622 (77%)
Query: 5 LQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRG 64
LQ+ R L+LLC L TL RA QIRYSV EE ++GSFVGNI+KDLGLEP LA++G
Sbjct: 4 LQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQG 63
Query: 65 VRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEI 124
VRIVSRG++QLFA+NPRSGSL+TA RIDREELC + C LN +L+ED L IY VEVEI
Sbjct: 64 VRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEI 123
Query: 125 IDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLR 184
DINDNAP F +E+E+K+SE PG R L NA D DVG N+LQ Y L+PN++FSL +R
Sbjct: 124 TDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVR 183
Query: 185 GRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFT 244
DG K PELVLE SLDRE+EA H L+L A DGGDP+ G I V VLD ND+ P+FT
Sbjct: 184 RGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFT 243
Query: 245 QSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQV 304
Q YR+S+PEN GTR+L V ATD DEG +V+Y + SE+F+L S +GE+ +
Sbjct: 244 QPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTI 303
Query: 305 RGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPG 364
LD+E F+E++I+ QDG GL T +++TV+DVNDNAPE +TS+ +S+ E+S PG
Sbjct: 304 IKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPG 363
Query: 365 TVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLT 424
T+I L NV D+DSG+N +C +P LPFKLEK+ NYY+L+T+R LDRE YNITLT
Sbjct: 364 TIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLT 423
Query: 425 ATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQ 484
A D G+P LS + H+ L VAD NDN P F +SYS YIPENNPRGAS+FSVTA DPDS
Sbjct: 424 AKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSND 483
Query: 485 NALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLS 544
NA VTYS +DTVQG PLSSY+SINS+TGVLYAL+SFDYEQ RDL++ VIARDSG+PPLS
Sbjct: 484 NAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLS 543
Query: 545 SNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAW 604
SNVSLSLFVLDQNDNAPEILYPA PTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAW
Sbjct: 544 SNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAW 603
Query: 605 LSYRLLKASEPGLFAVGEHTGE 626
LSY LLKASEPGLF+VG HTGE
Sbjct: 604 LSYHLLKASEPGLFSVGLHTGE 625
Score = 163 bits (413), Expect = 5e-40
Identities = 152/519 (29%), Positives = 225/519 (43%), Gaps = 47/519 (9%)
Query: 122 VEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL--SPNNYF 179
V+++D NDNAP F + E I + E+ + G R A D D G + Y L SP
Sbjct: 230 VKVLDANDNAPVFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETS 289
Query: 180 SLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDH 239
+ T G EL + LD E H + + A DG + + V V VLDVND+
Sbjct: 290 EVFELKSTSG----ELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVI--VTVLDVNDN 343
Query: 240 IPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSF-RNMESKASEIFQLDSQ 298
P F + SV E+ GT + + N D D G N S ++ K + +D+
Sbjct: 344 APEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEK--SVDNY 401
Query: 299 TGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINS 356
V R +LD E++ FY + + +DGG L T +L+ V D+NDNAP + TS
Sbjct: 402 YRLVTTR-ALDREQFSFYNITLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTY 460
Query: 357 ILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYGNYYKLITS 408
I EN+P G + + D DS +N V+ P + G Y L
Sbjct: 461 IPENNPRGASVFSVTAHDPDSNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYAL--- 517
Query: 409 RVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSA-------Y 461
R D E ++ + + A D G+PPLS+ + L V D NDN P + ++
Sbjct: 518 RSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVEL 577
Query: 462 IPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSF 521
P + G + V A+D DS QNA ++Y L + G+ S+ +TG + ++
Sbjct: 578 APRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGL-----FSVGLHTGEVRTARAL 632
Query: 522 DYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILY-------PALPTDGST 574
L V +D G PPLS+ V+L++ V D+ P+IL A+P D
Sbjct: 633 LDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADR---IPDILADLGSLEPSAIPNDSDL 689
Query: 575 GVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
+ L A + V V W RLL+AS
Sbjct: 690 TLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 728
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 613 bits (1582), Expect = e-175
Identities = 318/626 (50%), Positives = 425/626 (67%), Gaps = 7/626 (1%)
Query: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
A R + G R L LLL +F TL IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 6 AQRRRAGPRQVLFPLLLPLFYPTL----CEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
+ R +R VS K F+V+ +SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 62 SARELR-VSAEKLH-FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHV 119
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
V I D+ND+AP F++DE+ +++SE G L +A DPD+ +NSL YQLSPN YFS
Sbjct: 120 IVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFS 179
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
L + DG K PELVL+ +LDRE ++AH L+LTALDGGDP R G IR++V+D ND+
Sbjct: 180 LVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNP 239
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
P+F+Q VYRVS+ E++ GT +L V ATD DEGIN E+ YSF + KA +F LD TG
Sbjct: 240 PVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTG 299
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
+ + LDFE+ Y + I+ +D G L T +++ VVD NDN+PEI ITS + I+E+
Sbjct: 300 NILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMED 359
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
SPPG V+AL +DQDSGENG+V C + +PFK+ + NYYKL+T LDRE YN
Sbjct: 360 SPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYN 419
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
+T+ ATD+G PPLS+ + L++ D NDN PVF S+Y ++PENN GASI V+A DP
Sbjct: 420 VTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDP 479
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
D N V+YSL ++ LSSYVS+++ +GV++A ++FD+EQ R EL + ARD G
Sbjct: 480 DFGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGS 539
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
P LS+NVSL + V D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG
Sbjct: 540 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSG 599
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
NAWLSY +++ASEPGLF++G TGE
Sbjct: 600 HNAWLSYHVVQASEPGLFSLGLRTGE 625
Score = 148 bits (373), Expect = 2e-35
Identities = 132/483 (27%), Positives = 213/483 (44%), Gaps = 46/483 (9%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-----S 174
+ + +ID NDN P F +D + + E PG A D D G+NS +Y
Sbjct: 228 IRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADK 287
Query: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
+ FSL T G ++ + LD E+ + + + A D G + V + VV
Sbjct: 288 AQHVFSLDY---TTG----NILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVV-- 338
Query: 235 DVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRN-----MESKA 289
D ND+ P + + E+ G V + D D G NGEV S + S +
Sbjct: 339 DENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSS 398
Query: 290 SEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPE 347
+ ++L + +LD E+ Y + I D G L ++ T+ + + DVNDNAP
Sbjct: 399 NNYYKLVTDE-------ALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPV 451
Query: 348 ITITSSINSILENSPPGTVIALLNVQDQDSGENGQVS-CFIPNHLPFKLEKTYGNYYK-- 404
++ + + EN+ PG IA ++ D D G NG+VS I + L + +Y +
Sbjct: 452 FGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYVSVSAQS 511
Query: 405 --LITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH----- 455
+ R D E ++++ +TL A DQGSP LSA + + V D NDN P ++P
Sbjct: 512 GVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDG 571
Query: 456 SSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVL 515
S+ +P G + V A+D DS NA ++Y + + G+ S+ TG +
Sbjct: 572 SALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGL-----FSLGLRTGEV 626
Query: 516 YALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQ-NDNAPEILYPALPTDGST 574
+++ + L V RD G PPLS+ +L L D + P+ P+D
Sbjct: 627 RMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPSDSQA 686
Query: 575 GVE 577
++
Sbjct: 687 EMQ 689
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 613 bits (1582), Expect = e-175
Identities = 318/626 (50%), Positives = 425/626 (67%), Gaps = 7/626 (1%)
Query: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
A R + G R L LLL +F TL IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 6 AQRRRAGPRQVLFPLLLPLFYPTL----CEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
+ R +R VS K F+V+ +SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 62 SARELR-VSAEKLH-FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHV 119
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
V I D+ND+AP F++DE+ +++SE G L +A DPD+ +NSL YQLSPN YFS
Sbjct: 120 IVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFS 179
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
L + DG K PELVL+ +LDRE ++AH L+LTALDGGDP R G IR++V+D ND+
Sbjct: 180 LVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNP 239
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
P+F+Q VYRVS+ E++ GT +L V ATD DEGIN E+ YSF + KA +F LD TG
Sbjct: 240 PVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTG 299
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
+ + LDFE+ Y + I+ +D G L T +++ VVD NDN+PEI ITS + I+E+
Sbjct: 300 NILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMED 359
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
SPPG V+AL +DQDSGENG+V C + +PFK+ + NYYKL+T LDRE YN
Sbjct: 360 SPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYN 419
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
+T+ ATD+G PPLS+ + L++ D NDN PVF S+Y ++PENN GASI V+A DP
Sbjct: 420 VTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDP 479
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
D N V+YSL ++ LSSYVS+++ +GV++A ++FD+EQ R EL + ARD G
Sbjct: 480 DFGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGS 539
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
P LS+NVSL + V D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG
Sbjct: 540 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSG 599
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
NAWLSY +++ASEPGLF++G TGE
Sbjct: 600 HNAWLSYHVVQASEPGLFSLGLRTGE 625
Score = 371 bits (953), Expect = e-102
Identities = 270/697 (38%), Positives = 365/697 (52%), Gaps = 79/697 (11%)
Query: 75 LFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIY-GVEVEIIDINDNAPS 133
+F+++ +G+++T +D EE V +N+E +L V VE++D NDN+P
Sbjct: 291 VFSLDYTTGNILTQQPLDFEE----VERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPE 346
Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
+ ++ E + PG AL RD D G N LS F + +
Sbjct: 347 IIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIH----SSSNNYY 402
Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
+LV + +LDRE+ + + + A D G P + I + + DVND+ P+F QS Y V VP
Sbjct: 403 KLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVP 462
Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSF--RNMESKA-SEIFQLDSQTGEVQVRGSLDF 310
EN G + V+A+DPD G+NG V YS ++ES+ S + +Q+G V + + D
Sbjct: 463 ENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDH 522
Query: 311 EKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITI-------TSSINSILENS 361
E+ R +E+ +Q +D G L ++ + V D NDNAP + ++ +++ +
Sbjct: 523 EQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAA 582
Query: 362 PPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVL-DRELVQSYN 420
PG ++ + D DSG N +S + L ++ R L D++ V+
Sbjct: 583 QPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQ-R 641
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
+ + D G PPLSA + L AD V P S P ++ + V AL
Sbjct: 642 LLVAVRDGGQPPLSATATLHLVFADSLQE--VLPDFSDHP-TPSDSQAEMQFYLVVAL-- 696
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
AL++ + + L S + G D V+ SG
Sbjct: 697 -----ALISVLFLLAVILAIALRLRQSFSPTAG--------------DCFESVLCSKSGP 737
Query: 541 --PPLSSNVSLSL---FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAV 595
PP S +L F + + PE + T V+ P + + +
Sbjct: 738 VGPPNYSEGTLPYAYNFCVPGDQMNPEFNF-------FTSVDHCPATQDN---------L 781
Query: 596 DKDSGQNAWLSYRLLKAS--EPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDT 653
+KDS +L AS P + A + +QAPPNTDWRFSQAQRPGTSGSQNGDDT
Sbjct: 782 NKDS---------MLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDT 832
Query: 654 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 713
GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV
Sbjct: 833 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 892
Query: 714 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 750
YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
Score = 148 bits (373), Expect = 2e-35
Identities = 132/483 (27%), Positives = 213/483 (44%), Gaps = 46/483 (9%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-----S 174
+ + +ID NDN P F +D + + E PG A D D G+NS +Y
Sbjct: 228 IRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADK 287
Query: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
+ FSL T G ++ + LD E+ + + + A D G + V + VV
Sbjct: 288 AQHVFSLDY---TTG----NILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVV-- 338
Query: 235 DVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRN-----MESKA 289
D ND+ P + + E+ G V + D D G NGEV S + S +
Sbjct: 339 DENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSS 398
Query: 290 SEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPE 347
+ ++L + +LD E+ Y + I D G L ++ T+ + + DVNDNAP
Sbjct: 399 NNYYKLVTDE-------ALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPV 451
Query: 348 ITITSSINSILENSPPGTVIALLNVQDQDSGENGQVS-CFIPNHLPFKLEKTYGNYYK-- 404
++ + + EN+ PG IA ++ D D G NG+VS I + L + +Y +
Sbjct: 452 FGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYVSVSAQS 511
Query: 405 --LITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH----- 455
+ R D E ++++ +TL A DQGSP LSA + + V D NDN P ++P
Sbjct: 512 GVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDG 571
Query: 456 SSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVL 515
S+ +P G + V A+D DS NA ++Y + + G+ S+ TG +
Sbjct: 572 SALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGL-----FSLGLRTGEV 626
Query: 516 YALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQ-NDNAPEILYPALPTDGST 574
+++ + L V RD G PPLS+ +L L D + P+ P+D
Sbjct: 627 RMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPSDSQA 686
Query: 575 GVE 577
++
Sbjct: 687 EMQ 689
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 602 bits (1552), Expect = e-172
Identities = 310/619 (50%), Positives = 415/619 (67%), Gaps = 6/619 (0%)
Query: 8 GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
G RL +L L QIRY +PEE KGS VGN++ DLG +EL R +R+
Sbjct: 9 GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68
Query: 68 VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
S + F V+ SG L+ + R+DREE+C +C L E + E+ L Y V VEI DI
Sbjct: 69 SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126
Query: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
ND+ P F ++ E+++SE A PG RF L A D D+G+NSLQ Y+LS N FSL ++ +
Sbjct: 127 NDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQ 186
Query: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
DG+K PEL LE +LDRE+++ H L+LTALDGG P G +R+ V D ND+ P+F + V
Sbjct: 187 DGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDV 246
Query: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGS 307
YRVS+ EN+ GT VL V+ATD DEGIN E+ YSF + +IF L+S++GE+ +
Sbjct: 247 YRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKK 302
Query: 308 LDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVI 367
LDFE+ + Y M ++G+DGGGL T+ I + D NDN+PE+T S + ILEN+ PGT+I
Sbjct: 303 LDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLI 362
Query: 368 ALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATD 427
AL+ + DQDSGENG+V+C + +PFK+ + N YKL+T LDRE YN+T+TATD
Sbjct: 363 ALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATD 422
Query: 428 QGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNAL 487
+G PPLS+ V L++ D NDN PVF +SY +PENNP GASI V A D D N
Sbjct: 423 RGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQ 482
Query: 488 VTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNV 547
V+YS+ ++ + L+SYVS+++ +GV++A ++FDYEQ R EL + ARD G P LS+NV
Sbjct: 483 VSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANV 542
Query: 548 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSY 607
SL + V D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 543 SLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSY 602
Query: 608 RLLKASEPGLFAVGEHTGE 626
+L+ASEPGLF++G TGE
Sbjct: 603 HVLQASEPGLFSLGLRTGE 621
Score = 167 bits (424), Expect = 3e-41
Identities = 153/550 (27%), Positives = 242/550 (44%), Gaps = 59/550 (10%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-SPNNY 178
+ +++ D NDN P F D + + E+ PG +A D D G+NS +Y
Sbjct: 228 LRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI 287
Query: 179 FSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVND 238
FSL +K+ E+ + LD E+ + +++ DGG + + V I + D ND
Sbjct: 288 FSLN-------SKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQ--DEND 338
Query: 239 HIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQ 298
+ P T + EN GT + ++ D D G NGEV + +I
Sbjct: 339 NSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQG--EVPFKIISSSKN 396
Query: 299 TGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINS 356
+ ++ G+LD E+ Y + I D G L ++ ++++ + DVNDNAP S + S
Sbjct: 397 SYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVS 456
Query: 357 ILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEK-TYGNYYKL-------ITS 408
+ EN+PPG IA + D D G NGQVS I + LE +Y +
Sbjct: 457 VPENNPPGASIAQVCASDLDLGLNGQVSYSI---MASDLEPLALASYVSMSAQSGVVFAQ 513
Query: 409 RVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAY 461
R D E ++++ +TL A DQGSP LSA + + V D NDN P ++P S+
Sbjct: 514 RAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDM 573
Query: 462 IPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSF 521
+P G + V A+D DS NA ++Y + + G+ S+ TG + ++
Sbjct: 574 VPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL-----FSLGLRTGEVRTARAL 628
Query: 522 DYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQ-NDNAPEILYPALPTDGSTGVE--- 577
L V RD G PPLS+ +L L D + P+I +P+D ++
Sbjct: 629 GDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYL 688
Query: 578 -LAPRSAEPGYLVTKVVAV----DKDSGQNAWLSYRLLKASEPGLFAVGEHTGEQAPPNT 632
+A +L+ ++AV + S AW + +PGL +G PPN
Sbjct: 689 VVALALISVLFLLAVILAVALRLRRSSSPAAWSCF------QPGLCV---KSGPVVPPN- 738
Query: 633 DWRFSQAQRP 642
+SQ P
Sbjct: 739 ---YSQGTLP 745
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 602 bits (1552), Expect = e-172
Identities = 310/619 (50%), Positives = 415/619 (67%), Gaps = 6/619 (0%)
Query: 8 GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
G RL +L L QIRY +PEE KGS VGN++ DLG +EL R +R+
Sbjct: 9 GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68
Query: 68 VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
S + F V+ SG L+ + R+DREE+C +C L E + E+ L Y V VEI DI
Sbjct: 69 SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126
Query: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
ND+ P F ++ E+++SE A PG RF L A D D+G+NSLQ Y+LS N FSL ++ +
Sbjct: 127 NDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQ 186
Query: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
DG+K PEL LE +LDRE+++ H L+LTALDGG P G +R+ V D ND+ P+F + V
Sbjct: 187 DGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDV 246
Query: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGS 307
YRVS+ EN+ GT VL V+ATD DEGIN E+ YSF + +IF L+S++GE+ +
Sbjct: 247 YRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKK 302
Query: 308 LDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVI 367
LDFE+ + Y M ++G+DGGGL T+ I + D NDN+PE+T S + ILEN+ PGT+I
Sbjct: 303 LDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLI 362
Query: 368 ALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATD 427
AL+ + DQDSGENG+V+C + +PFK+ + N YKL+T LDRE YN+T+TATD
Sbjct: 363 ALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATD 422
Query: 428 QGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNAL 487
+G PPLS+ V L++ D NDN PVF +SY +PENNP GASI V A D D N
Sbjct: 423 RGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQ 482
Query: 488 VTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNV 547
V+YS+ ++ + L+SYVS+++ +GV++A ++FDYEQ R EL + ARD G P LS+NV
Sbjct: 483 VSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANV 542
Query: 548 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSY 607
SL + V D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 543 SLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSY 602
Query: 608 RLLKASEPGLFAVGEHTGE 626
+L+ASEPGLF++G TGE
Sbjct: 603 HVLQASEPGLFSLGLRTGE 621
Score = 321 bits (823), Expect = 1e-87
Identities = 249/724 (34%), Positives = 343/724 (47%), Gaps = 121/724 (16%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-SPNNY 178
+ +++ D NDN P F D + + E+ PG +A D D G+NS +Y
Sbjct: 228 LRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI 287
Query: 179 FSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVND 238
FSL +K+ E+ + LD E+ + +++ DGG + + V I + D ND
Sbjct: 288 FSLN-------SKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQ--DEND 338
Query: 239 HIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQ 298
+ P T + EN GT + ++ D D G NGEV + +I
Sbjct: 339 NSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQG--EVPFKIISSSKN 396
Query: 299 TGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINS 356
+ ++ G+LD E+ Y + I D G L ++ ++++ + DVNDNAP S + S
Sbjct: 397 SYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVS 456
Query: 357 ILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEK-TYGNYYKL-------ITS 408
+ EN+PPG IA + D D G NGQVS I + LE +Y +
Sbjct: 457 VPENNPPGASIAQVCASDLDLGLNGQVSYSI---MASDLEPLALASYVSMSAQSGVVFAQ 513
Query: 409 RVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAY 461
R D E ++++ +TL A DQGSP LSA + + V D NDN P ++P S+
Sbjct: 514 RAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDM 573
Query: 462 IPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSF 521
+P G + V A+D DS NA ++Y + + G+ S+ TG + ++
Sbjct: 574 VPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL-----FSLGLRTGEVRTARAL 628
Query: 522 DYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQ-NDNAPEILYPALPTDGSTGVE--- 577
L V RD G PPLS+ +L L D + P+I +P+D ++
Sbjct: 629 GDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYL 688
Query: 578 -LAPRSAEPGYLVTKVVAV----DKDSGQNAWLSYRLLKASEPGLFAVGEHTGEQAPPN- 631
+A +L+ ++AV + S AW + +PGL +G PPN
Sbjct: 689 VVALALISVLFLLAVILAVALRLRRSSSPAAWSCF------QPGLCV---KSGPVVPPNY 739
Query: 632 ------------------TDWRFSQAQRPGTSGSQ--NGDDTGT---------------- 655
T++ F + +SG GD +G
Sbjct: 740 SQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSSESTSHPEL 799
Query: 656 -------WPNNQ----------------------FDTEMLQAMILASASEAADGSSTLGG 686
W +Q FDTEMLQAMILASASEAADGSSTLGG
Sbjct: 800 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 859
Query: 687 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 746
GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 860 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 919
Query: 747 KEKK 750
KEKK
Sbjct: 920 KEKK 923
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 596 bits (1536), Expect = e-170
Identities = 309/626 (49%), Positives = 418/626 (66%), Gaps = 7/626 (1%)
Query: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
A R + G R L LLL +F TL + IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 6 AQRRRAGPRQVLFPLLLPLFYPTL----SEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
Query: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
+ R +R VS K F+V+ SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 62 SARKLR-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHV 119
Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
V I D+ND+AP F + E+ +++ E A G R +L A DPD+ +NS++ Y+++ N YFS
Sbjct: 120 IVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFS 179
Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
L +R +DG K PEL LE LDRE++ +H L+LTALDGGDP R I + V D ND+
Sbjct: 180 LMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNP 239
Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
P+F++ YR+S+ EN+ G+ VL V ATD DEG+N E+ Y FR+ +F LD +TG
Sbjct: 240 PVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTG 299
Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
++ S DFE Y ME++ +DGGGL T ++I ++D NDN+PEI ITS + ILEN
Sbjct: 300 MIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILEN 359
Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
SPPG V+AL +D D G NG+V C I +PFK+ + NYYKL+T LDRE YN
Sbjct: 360 SPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYN 419
Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
+T+ ATD+G PPLS+ + L VAD NDN PVF +SY ++ ENNP GASI V+A DP
Sbjct: 420 VTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDP 479
Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
D N ++YS+ ++ + +SSYVS+++ +GV++A ++FD+EQ R L + ARD G
Sbjct: 480 DLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGS 539
Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
P LS+NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG
Sbjct: 540 PTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSG 599
Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
NAWLSY +L+ASEPGLF++G TGE
Sbjct: 600 HNAWLSYHVLQASEPGLFSLGLRTGE 625
Score = 258 bits (660), Expect = 1e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 627 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 686
QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 807 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 866
Query: 687 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 746
GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 867 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 926
Query: 747 KEKK 750
KEKK
Sbjct: 927 KEKK 930
Score = 161 bits (407), Expect = 2e-39
Identities = 142/468 (30%), Positives = 215/468 (45%), Gaps = 46/468 (9%)
Query: 120 VEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-----S 174
+E+ + D NDN P F DE I +SE+ PG+ A D D GVN+ +Y S
Sbjct: 228 IEISVKDTNDNPPVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQS 287
Query: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
+ FSL +T KN + S D E + + + A DGG + V I + L
Sbjct: 288 TKHMFSLD--EKTGMIKNNQ-----SFDFEDVERYTMEVEAKDGGGLSTQCKVIIEI--L 338
Query: 235 DVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKAS-EIF 293
D ND+ P + + EN G V + D D G NGEV N+E+ +I+
Sbjct: 339 DENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFGGNGEVRC---NIETDIPFKIY 395
Query: 294 QLDSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITIT 351
+ ++ G+LD E+ Y + I D G L ++ ++ + V D+NDNAP T
Sbjct: 396 SSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQT 455
Query: 352 SSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITS--- 408
S + + EN+PPG IA ++ D D G NG +S I + LE + Y +++
Sbjct: 456 SYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSI---VASDLEPLAVSSYVSVSAQSG 512
Query: 409 -----RVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----S 456
R D E ++++ +TL A D GSP LSA + + V D NDN P ++P S
Sbjct: 513 VVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRNDNAPRVLYPALGPDGS 572
Query: 457 SYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLY 516
++ +P + G + V A+D DS NA ++Y + + G+ S+ TG +
Sbjct: 573 AFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL-----FSLGLRTGEVR 627
Query: 517 ALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEIL 564
++ L V RD G PPLS+ +L L DN EIL
Sbjct: 628 TARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFA---DNLQEIL 672
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,129,963
Number of Sequences: 37866
Number of extensions: 1340378
Number of successful extensions: 9242
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2680
Number of HSP's gapped (non-prelim): 779
length of query: 750
length of database: 18,247,518
effective HSP length: 110
effective length of query: 640
effective length of database: 14,082,258
effective search space: 9012645120
effective search space used: 9012645120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.