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Search of human proteins with 14165280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14165280 normal mucosa of esophagus specific 1 [Homo
sapiens]
(83 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens] 169 3e-43
gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens] 169 3e-43
gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens] 47 3e-06
gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens] 47 3e-06
gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo ... 47 3e-06
gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog ... 45 2e-05
gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4... 42 1e-04
gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 34 0.029
gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo ... 34 0.029
gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo ... 34 0.029
gi|188536004 zinc finger protein 469 [Homo sapiens] 30 0.32
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 30 0.54
gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo sapi... 27 4.6
gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo sapi... 27 4.6
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 26 7.8
gi|21314662 zinc finger protein 10 [Homo sapiens] 26 7.8
>gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 169 bits (429), Expect = 3e-43
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MSFFQLLMKRKELIPLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQ 60
MSFFQLLMKRKELIPLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQ
Sbjct: 1 MSFFQLLMKRKELIPLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQ 60
Query: 61 KLITINQQWKPIEELQNVQRVTK 83
KLITINQQWKPIEELQNVQRVTK
Sbjct: 61 KLITINQQWKPIEELQNVQRVTK 83
>gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 169 bits (429), Expect = 3e-43
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MSFFQLLMKRKELIPLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQ 60
MSFFQLLMKRKELIPLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQ
Sbjct: 1 MSFFQLLMKRKELIPLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQ 60
Query: 61 KLITINQQWKPIEELQNVQRVTK 83
KLITINQQWKPIEELQNVQRVTK
Sbjct: 61 KLITINQQWKPIEELQNVQRVTK 83
>gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 47.0 bits (110), Expect = 3e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 KRKELIPLVVFMTVAAGGASSFAVY-SLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
K L+PL VF+ V GA+ + ++ +L+ DV DRK N EPW +DP K ++N
Sbjct: 29 KHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSVNV 88
Query: 68 QWKPIEE 74
+ +++
Sbjct: 89 DYSKLKK 95
>gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 47.0 bits (110), Expect = 3e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 KRKELIPLVVFMTVAAGGASSFAVY-SLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
K L+PL VF+ V GA+ + ++ +L+ DV DRK N EPW +DP K ++N
Sbjct: 29 KHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSVNV 88
Query: 68 QWKPIEE 74
+ +++
Sbjct: 89 DYSKLKK 95
>gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo
sapiens]
Length = 100
Score = 47.0 bits (110), Expect = 3e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 KRKELIPLVVFMTVAAGGASSFAVY-SLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
K L+PL VF+ V GA+ + ++ +L+ DV DRK N EPW +DP K ++N
Sbjct: 29 KHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSVNV 88
Query: 68 QWKPIEE 74
+ +++
Sbjct: 89 DYSKLKK 95
>gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog
[Homo sapiens]
Length = 87
Score = 44.7 bits (104), Expect = 2e-05
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 3 FFQLLMKRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQK 61
F++ + + +IP++ + + G A+ + + +L DV DRK NPEPW + P K
Sbjct: 10 FYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYK 69
Query: 62 LITINQQWKPIEE 74
+ ++ +K +++
Sbjct: 70 FLAVSTDYKKLKK 82
>gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4,
9kDa [Homo sapiens]
Length = 81
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
K LIPL VF+ A GA+ + + +L+ DV DR NPEPW + P K ++N
Sbjct: 11 KHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRN-NPEPWNKLGPNDQYKFYSVNV 69
Query: 68 QWKPIEE 74
+ +++
Sbjct: 70 DYSKLKK 76
>gi|239755555 PREDICTED: similar to NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 4 [Homo sapiens]
Length = 82
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
K LI +F+ + GA+ + + + + DV R NPEPW + P K ++N
Sbjct: 11 KNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYSVNV 70
Query: 68 QWKPIEE 74
+ +++
Sbjct: 71 DYSKLKK 77
>gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo
sapiens]
Length = 82
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
K LI +F+ + GA+ + + + + DV R NPEPW + P K ++N
Sbjct: 11 KNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYSVNV 70
Query: 68 QWKPIEE 74
+ +++
Sbjct: 71 DYSKLKK 77
>gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo
sapiens]
Length = 82
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
K LI +F+ + GA+ + + + + DV R NPEPW + P K ++N
Sbjct: 11 KNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYSVNV 70
Query: 68 QWKPIEE 74
+ +++
Sbjct: 71 DYSKLKK 77
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 30.4 bits (67), Expect = 0.32
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 55 DPTVPQKLITINQQWKPIEELQNVQRVT 82
DP PQ+L+ + W P+EE VQ T
Sbjct: 2130 DPPGPQQLLACSPAWAPLEEADGVQATT 2157
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 43 DRKKNPEPWETVDPTVPQKL---ITINQQWKPIEELQNVQRVTK 83
+ KKNP+P E P +PQ++ + Q KP E++ + TK
Sbjct: 368 NEKKNPQPPEETGPVLPQEINPQVEEKTQTKPTEKILELPDETK 411
>gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo
sapiens]
Length = 931
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 15 PLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQQWKP 71
P+ + + V SFA ++ R+K PE W V L T QW P
Sbjct: 645 PMFLCIKVGKPMRKSFATHTAAMVQQYGKRRKQPEYWFAVPRERVDHLYTFFVQWSP 701
>gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo
sapiens]
Length = 942
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 15 PLVVFMTVAAGGASSFAVYSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQQWKP 71
P+ + + V SFA ++ R+K PE W V L T QW P
Sbjct: 656 PMFLCIKVGKPMRKSFATHTAAMVQQYGKRRKQPEYWFAVPRERVDHLYTFFVQWSP 712
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 39 DVILDRKKNPEPWETVDPTVPQKLITINQQWKPIEELQNVQRV 81
D+ L+ ++N + WE + P ++ + ++ K +EE+ + R+
Sbjct: 1031 DIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRM 1073
>gi|21314662 zinc finger protein 10 [Homo sapiens]
Length = 573
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 33 YSLWKTDVILDRKKNPEPW 51
Y L K DVIL +K EPW
Sbjct: 55 YQLTKPDVILRLEKGEEPW 73
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,124,675
Number of Sequences: 37866
Number of extensions: 111824
Number of successful extensions: 360
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 16
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.