Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 9955945
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9955945 acrosomal vesicle protein 1 isoform k precursor
[Homo sapiens]
(81 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9955945 acrosomal vesicle protein 1 isoform k precursor [Homo... 170 3e-43
gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo... 150 2e-37
gi|9955941 acrosomal vesicle protein 1 isoform h precursor [Homo... 95 1e-20
gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo... 94 2e-20
gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo... 94 2e-20
gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo... 94 2e-20
gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo... 94 2e-20
gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo... 94 2e-20
gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo... 94 2e-20
gi|47086459 prostate and testis expressed 2 [Homo sapiens] 30 0.32
gi|169214821 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|169215021 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|169214546 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] 29 0.92
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 28 2.1
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 28 2.1
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 28 2.1
gi|170016081 XRP2 protein [Homo sapiens] 27 4.6
gi|203098098 shroom family member 3 protein [Homo sapiens] 27 4.6
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 26 6.0
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 26 6.0
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 26 6.0
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 26 7.8
>gi|9955945 acrosomal vesicle protein 1 isoform k precursor [Homo
sapiens]
Length = 81
Score = 170 bits (430), Expect = 3e-43
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPGGKLQFMVQGCENMCPSMNL 60
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPGGKLQFMVQGCENMCPSMNL
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPGGKLQFMVQGCENMCPSMNL 60
Query: 61 FSHGTRMQIICCRNQSFCNKI 81
FSHGTRMQIICCRNQSFCNKI
Sbjct: 61 FSHGTRMQIICCRNQSFCNKI 81
>gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo
sapiens]
Length = 121
Score = 150 bits (379), Expect = 2e-37
Identities = 81/121 (66%), Positives = 81/121 (66%), Gaps = 40/121 (33%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG------------------- 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPGTILNCYTCAYMNDQGKCLR 60
Query: 42 ---------------------GKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNK 80
GKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNK
Sbjct: 61 GEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNK 120
Query: 81 I 81
I
Sbjct: 121 I 121
>gi|9955941 acrosomal vesicle protein 1 isoform h precursor [Homo
sapiens]
Length = 155
Score = 94.7 bits (234), Expect = 1e-20
Identities = 46/64 (71%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Query: 18 GTSSQPNELSGSIDHQTSVQQLPGGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSF 77
G + + SG+ TS GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSF
Sbjct: 96 GEHASGEQASGAPISSTST----GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSF 151
Query: 78 CNKI 81
CNKI
Sbjct: 152 CNKI 155
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
>gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo
sapiens]
Length = 210
Score = 94.0 bits (232), Expect = 2e-20
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 41 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 81
GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI
Sbjct: 170 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 210
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
>gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo
sapiens]
Length = 176
Score = 94.0 bits (232), Expect = 2e-20
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 41 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 81
GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI
Sbjct: 136 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 176
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
>gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo
sapiens]
Length = 265
Score = 94.0 bits (232), Expect = 2e-20
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 41 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 81
GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI
Sbjct: 225 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 265
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
>gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo
sapiens]
Length = 170
Score = 94.0 bits (232), Expect = 2e-20
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 41 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 81
GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI
Sbjct: 130 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 170
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
>gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo
sapiens]
Length = 195
Score = 94.0 bits (232), Expect = 2e-20
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 41 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 81
GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI
Sbjct: 155 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 195
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
>gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo
sapiens]
Length = 246
Score = 94.0 bits (232), Expect = 2e-20
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 41 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 81
GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI
Sbjct: 206 GGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 246
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQLPG 41
>gi|47086459 prostate and testis expressed 2 [Homo sapiens]
Length = 113
Score = 30.4 bits (67), Expect = 0.32
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 51 CENMCPSMNLFSHGTRMQIICCRNQSFCN 79
C C +N R+++ICC + ++CN
Sbjct: 80 CMTSCEDINFLGFTKRVELICCDHSNYCN 108
>gi|169214821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 7 LMSLYLLGSARGTSSQPNELSGSIDH 32
L +L LLGSA T++ PN SG++ H
Sbjct: 24 LDALRLLGSAHATTTHPNPASGTLGH 49
>gi|169215021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 7 LMSLYLLGSARGTSSQPNELSGSIDH 32
L +L LLGSA T++ PN SG++ H
Sbjct: 24 LDALRLLGSAHATTTHPNPASGTLGH 49
>gi|169214546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 7 LMSLYLLGSARGTSSQPNELSGSIDH 32
L +L LLGSA T++ PN SG++ H
Sbjct: 24 LDALRLLGSAHATTTHPNPASGTLGH 49
>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
Length = 1140
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 46 FMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNKI 81
FM + CE CPS + +G R QI C N S C+ I
Sbjct: 780 FMGRHCEQKCPS-GTYGYGCR-QICDCLNNSTCDHI 813
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 40 PGGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNK 80
PGG L +++ C CP+ + S + + CC+ S CN+
Sbjct: 53 PGGIL--VMKSCSPTCPNSTVSSDSRALSVSCCQG-SQCNR 90
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 40 PGGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNK 80
PGG L +++ C CP+ + S + + CC+ S CN+
Sbjct: 53 PGGIL--VMKSCSPTCPNSTVSSDSRALSVSCCQG-SQCNR 90
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 40 PGGKLQFMVQGCENMCPSMNLFSHGTRMQIICCRNQSFCNK 80
PGG L +++ C CP+ + S + + CC+ S CN+
Sbjct: 53 PGGIL--VMKSCSPTCPNSTVSSDSRALSVSCCQG-SQCNR 90
>gi|170016081 XRP2 protein [Homo sapiens]
Length = 350
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 35 SVQQLPG--GKLQFMVQGCENMCPSMNLFSHGTRMQIICCRN 74
+V +LPG QF++Q CEN ++ +F H + I C N
Sbjct: 49 TVGRLPGTVAGQQFLIQDCENC--NIYIFDHSATVTIDDCTN 88
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 16 ARGTSSQPNELSGSIDHQTSVQQLP 40
A G SS P+E G++DHQ + P
Sbjct: 1306 AIGDSSVPSECPGTLDHQRQASRTP 1330
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 25 ELSGSIDHQTSVQQLPGGKLQFMVQGCENMCP 56
E G++ +T QL G K +++GC CP
Sbjct: 1411 EPCGTVTAKTCKDQLVGQKFSSLLEGCYAKCP 1442
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 25 ELSGSIDHQTSVQQLPGGKLQFMVQGCENMCP 56
E G++ +T QL G K +++GC CP
Sbjct: 1595 EPCGTVTAKTCKDQLVGQKFSSLLEGCYAKCP 1626
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 25 ELSGSIDHQTSVQQLPGGKLQFMVQGCENMCP 56
E G++ +T QL G K +++GC CP
Sbjct: 1595 EPCGTVTAKTCKDQLVGQKFSSLLEGCYAKCP 1626
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 12 LLGSARGTSSQPNELSGSIDHQTSVQQ-LPGGKLQFMVQGCENMCPSMNLFSHGTRMQII 70
L+G S P S TS+Q LP LQ+ C P++ L+ M +
Sbjct: 2413 LIGRPPSASQTPVPSSPLQISMTSLQNSLPPQLLQYQCDQCTVAFPTLELWQEHQHMHFL 2472
Query: 71 CCRNQ 75
+NQ
Sbjct: 2473 AAQNQ 2477
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,859,338
Number of Sequences: 37866
Number of extensions: 98094
Number of successful extensions: 324
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 34
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.