Guide to the Human Genome
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Name: PATE2 Sequence: fasta or formatted (113aa) NCBI GI: 47086459
Description:

prostate and testis expressed 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          2           1
 C cysteine            9.7         11           2
 D aspartate           2.7          3           1
 E glutamate           6.2          7           1
 F phenylalanine       4.4          5           1
 G glycine             6.2          7           1
 H histidine           4.4          5           1
 I isoleucine          4.4          5           1
 K lysine              7.1          8           2
 L leucine            13.3         15           2
 M methionine          4.4          5           1
 N asparagine          3.5          4           1
 P proline             2.7          3           1
 Q glutamine           1.8          2           1
 R arginine            1.8          2           1
 S serine              7.1          8           1
 T threonine           5.3          6           1
 V valine              5.3          6           1
 W tryptophan          0.9          1           1
 Y tyrosine            7.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostate and testis expressed 2 
ACRV1                 0.054   acrosomal vesicle protein 1 isoform j precursor [Homo...
ACRV1                 0.054   acrosomal vesicle protein 1 isoform c precursor [Homo...
ACRV1                 0.054   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.054   acrosomal vesicle protein 1 isoform a precursor [Homo...
ACRV1                 0.054   acrosomal vesicle protein 1 isoform f precursor [Homo...
ACRV1                 0.054   acrosomal vesicle protein 1 isoform d precursor [Homo...
ACRV1                 0.054   acrosomal vesicle protein 1 isoform b precursor [Homo...
ACRV1                 0.022   acrosomal vesicle protein 1 isoform k precursor [Homo...
ACRV1                 0.022   acrosomal vesicle protein 1 isoform h precursor [Homo...
EFCAB5                0.022   EF-hand calcium binding domain 5 isoform a 
TRAF3                 0.013   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.013   TNF receptor-associated factor 3 isoform 2 
TRAF3                 0.013   TNF receptor-associated factor 3 isoform 1 
LOC100292052          0.004   PREDICTED: similar to hCG1773661 
LOC100287226          0.004   PREDICTED: similar to hCG1773661 
LOC100287226          0.004   PREDICTED: hypothetical protein XP_002343677 
LYNX1                 0.004   Ly-6 neurotoxin-like protein 1 isoform a 
LYNX1                 0.004   secreted Ly6/uPAR related protein 2 isoform b 
MYO7B                 0.004   myosin VIIB 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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