Search of human proteins with 94721340

Search of human proteins with 94721340

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]
         (832 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]       1679   0.0  
gi|116812584 SID1 transmembrane family, member 1 [Homo sapiens]       947   0.0  
gi|17017967 barttin [Homo sapiens]                                     35   0.37 
gi|39995086 solute carrier family 24 member 6 [Homo sapiens]           34   0.49 
gi|4505205 matrix metalloproteinase 10 preproprotein [Homo sapiens]    31   4.1  
gi|206597509 HIV-1 Rev binding protein isoform 4 [Homo sapiens]        31   5.4  
gi|206597507 HIV-1 Rev binding protein isoform 3 [Homo sapiens]        31   5.4  
gi|206597505 HIV-1 Rev binding protein isoform 1 [Homo sapiens]        31   5.4  
gi|38570132 HIV-1 Rev binding protein isoform 2 [Homo sapiens]         31   5.4  
gi|5729986 processing of precursor 4 [Homo sapiens]                    30   7.1  

>gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]
          Length = 832

 Score = 1679 bits (4348), Expect = 0.0
 Identities = 832/832 (100%), Positives = 832/832 (100%)

Query: 1   MFALGLPFLVLLVASVESHLGVLGPKNVSQKDAEFERTYVDEVNSELVNIYTFNHTVTRN 60
           MFALGLPFLVLLVASVESHLGVLGPKNVSQKDAEFERTYVDEVNSELVNIYTFNHTVTRN
Sbjct: 1   MFALGLPFLVLLVASVESHLGVLGPKNVSQKDAEFERTYVDEVNSELVNIYTFNHTVTRN 60

Query: 61  RTEGVRVSVNVLNKQKGAPLLFVVRQKEAVVSFQVPLILRGMFQRKYLYQKVERTLCQPP 120
           RTEGVRVSVNVLNKQKGAPLLFVVRQKEAVVSFQVPLILRGMFQRKYLYQKVERTLCQPP
Sbjct: 61  RTEGVRVSVNVLNKQKGAPLLFVVRQKEAVVSFQVPLILRGMFQRKYLYQKVERTLCQPP 120

Query: 121 TKNESEIQFFYVDVSTLSPVNTTYQLRVSRMDDFVLRTGEQFSFNTTAAQPQYFKYEFPE 180
           TKNESEIQFFYVDVSTLSPVNTTYQLRVSRMDDFVLRTGEQFSFNTTAAQPQYFKYEFPE
Sbjct: 121 TKNESEIQFFYVDVSTLSPVNTTYQLRVSRMDDFVLRTGEQFSFNTTAAQPQYFKYEFPE 180

Query: 181 GVDSVIVKVTSNKAFPCSVISIQDVLCPVYDLDNNVAFIGMYQTMTKKAAITVQRKDFPS 240
           GVDSVIVKVTSNKAFPCSVISIQDVLCPVYDLDNNVAFIGMYQTMTKKAAITVQRKDFPS
Sbjct: 181 GVDSVIVKVTSNKAFPCSVISIQDVLCPVYDLDNNVAFIGMYQTMTKKAAITVQRKDFPS 240

Query: 241 NSFYVVVVVKTEDQACGGSLPFYPFAEDEPVDQGHRQKTLSVLVSQAVTSEAYVSGMLFC 300
           NSFYVVVVVKTEDQACGGSLPFYPFAEDEPVDQGHRQKTLSVLVSQAVTSEAYVSGMLFC
Sbjct: 241 NSFYVVVVVKTEDQACGGSLPFYPFAEDEPVDQGHRQKTLSVLVSQAVTSEAYVSGMLFC 300

Query: 301 LGIFLSFYLLTVLLACWENWRQKKKTLLVAIDRACPESGHPRVLADSFPGSSPYEGYNYG 360
           LGIFLSFYLLTVLLACWENWRQKKKTLLVAIDRACPESGHPRVLADSFPGSSPYEGYNYG
Sbjct: 301 LGIFLSFYLLTVLLACWENWRQKKKTLLVAIDRACPESGHPRVLADSFPGSSPYEGYNYG 360

Query: 361 SFENVSGSTDGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDK 420
           SFENVSGSTDGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDK
Sbjct: 361 SFENVSGSTDGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDK 420

Query: 421 NVIRTKQYLYVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGN 480
           NVIRTKQYLYVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGN
Sbjct: 421 NVIRTKQYLYVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGN 480

Query: 481 QDICYYNFLCAHPLGNLSAFNNILSNLGYILLGLLFLLIILQREINHNRALLRNDLCALE 540
           QDICYYNFLCAHPLGNLSAFNNILSNLGYILLGLLFLLIILQREINHNRALLRNDLCALE
Sbjct: 481 QDICYYNFLCAHPLGNLSAFNNILSNLGYILLGLLFLLIILQREINHNRALLRNDLCALE 540

Query: 541 CGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHP 600
           CGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHP
Sbjct: 541 CGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHP 600

Query: 601 DINASAYSAYACLAIVIFFSVLGVVFGKGNTAFWIVFSIIHIIATLLLSTQLYYMGRWKL 660
           DINASAYSAYACLAIVIFFSVLGVVFGKGNTAFWIVFSIIHIIATLLLSTQLYYMGRWKL
Sbjct: 601 DINASAYSAYACLAIVIFFSVLGVVFGKGNTAFWIVFSIIHIIATLLLSTQLYYMGRWKL 660

Query: 661 DSGIFRRILHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRPNDFASYLLA 720
           DSGIFRRILHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRPNDFASYLLA
Sbjct: 661 DSGIFRRILHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRPNDFASYLLA 720

Query: 721 IGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAES 780
           IGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAES
Sbjct: 721 IGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAES 780

Query: 781 REHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF 832
           REHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF
Sbjct: 781 REHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF 832


>gi|116812584 SID1 transmembrane family, member 1 [Homo sapiens]
          Length = 827

 Score =  947 bits (2447), Expect = 0.0
 Identities = 475/804 (59%), Positives = 600/804 (74%), Gaps = 22/804 (2%)

Query: 31  KDAEFERTYVDEVNSELVNIYTFNHTVTRNRTEGVRVSVNVLNKQKGAPLLFVVRQKEAV 90
           + A+F+  Y   VN    NIY+FN+T   ++   VRV VN  ++    P+L VVRQ++ V
Sbjct: 44  RGADFDHVYSGVVNLSTENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEV 103

Query: 91  VSFQVPLILRGMFQRKYLYQKVERTLCQPPTKNESEI--QFFYVDVSTLSPVNTTYQLRV 148
           +S+QVPL+ +G++QR Y YQ+V RTLC     NE+    Q  +VDV++++P+   Y+L V
Sbjct: 104 LSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLV 163

Query: 149 SRMDDFVLRTGEQFSFNTTAAQPQYFKYEFPEGVDSVIVKVTSNKAFPCSVISIQDVLCP 208
           +++  F LRT   F F  + +QPQYF Y+FP+ VDSVI+KV S  A+PCSV+S+Q+++CP
Sbjct: 164 TKLKHFQLRTNVAFHFTASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCP 223

Query: 209 VYDLDNNVAFIGMYQTMTKKAAITVQRKDFPSNSFYVVVVVKTEDQACGGSLPFYPFAED 268
           VYDLD+NV F G+YQ+MTKKAAIT+Q+KDFP   F+VV V+K ED ACGGS  F+   ++
Sbjct: 224 VYDLDHNVEFNGVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGS--FFIQEKE 281

Query: 269 EPVDQGHRQKTLSVLVSQAVTSEAYVSGMLFCLGIFLSFYLLTVLLACWENWRQKKKTLL 328
                  R+K L V +  ++    YV   LF + IFLSFYL  +L+      R ++K++ 
Sbjct: 282 NQTWNLQRKKNLEVTIVPSIKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSID 341

Query: 329 VAIDRACPESGHPRVLADSFPGSSPYEGYNYGSFENVSGSTDGLVDSAGTGDLSYGYQGR 388
            +        G   ++A     +S  EG NYG+ +  S S    + S+  G         
Sbjct: 342 GSFGS---NDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGG--------- 389

Query: 389 SFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDKNVIRTKQYLYVADLARKDKRVLRKKYQI 448
              P G   + D+ SSVEE D+DT+ DI+SDKN+IRTK +LY++DL+RKD+R++ KKY+I
Sbjct: 390 ---PPG---QSDTDSSVEESDFDTMPDIESDKNIIRTKMFLYLSDLSRKDRRIVSKKYKI 443

Query: 449 YFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLG 508
           YFWNI TIAVFYALPV+QLVITYQTVVNVTGNQDICYYNFLCAHPLG LSAFNNILSNLG
Sbjct: 444 YFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLG 503

Query: 509 YILLGLLFLLIILQREINHNRALLRNDLCALECGIPKHFGLFYAMGTALMMEGLLSACYH 568
           ++LLG LFLLI+L+R+I H RAL   D+ A+E GIPKHFGLFYAMG ALMMEG+LSACYH
Sbjct: 504 HVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSACYH 563

Query: 569 VCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLAIVIFFSVLGVVFGK 628
           VCPNY+NFQFDTSFMYMIAGLCMLKLYQ RHPDINASAYSAYA  A+VI  +VLGVVFGK
Sbjct: 564 VCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVIMVTVLGVVFGK 623

Query: 629 GNTAFWIVFSIIHIIATLLLSTQLYYMGRWKLDSGIFRRILHVLYTDCIRQCSGPLYVDR 688
            +  FW++FS IH++A+L LSTQ+YYMGR+K+D GIFRR   V YTDCI+QCS PLY+DR
Sbjct: 624 NDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDLGIFRRAAMVFYTDCIQQCSRPLYMDR 683

Query: 689 MVLLVMGNVINWSLAAYGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIP 748
           MVLLV+GN++NWS A +GLI RP DFASY+L I ICNLLLY AFYIIMKLRS E++  +P
Sbjct: 684 MVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVP 743

Query: 749 LLCIVCTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMF 808
           L CIV T+V+W  AL+FFFQ LS+W+ TPAESRE NR+CILLDFFDDHDIWHFLS+ A+F
Sbjct: 744 LFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALF 803

Query: 809 GSFLVLLTLDDDLDTVQRDKIYVF 832
            SFLVLLTLDDDLD V+RD+I VF
Sbjct: 804 FSFLVLLTLDDDLDVVRRDQIPVF 827


>gi|17017967 barttin [Homo sapiens]
          Length = 320

 Score = 34.7 bits (78), Expect = 0.37
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 15/85 (17%)

Query: 507 LGYILLGLLFLLIILQREINHNRALLRNDLCALECGIPKHFGLFYAMGTALMMEGLLSAC 566
           +G+I+LGL FLL +    ++H+R              P+ +G FYAMG+ +++ G++ + 
Sbjct: 9   IGFIVLGL-FLLALGTFLMSHDR--------------PQVYGTFYAMGSVMVIGGIIWSM 53

Query: 567 YHVCPNYTNFQFDTSFMYMIAGLCM 591
               P  T    D+ F  +++   M
Sbjct: 54  CQCYPKITFVPADSDFQGILSPKAM 78


>gi|39995086 solute carrier family 24 member 6 [Homo sapiens]
          Length = 584

 Score = 34.3 bits (77), Expect = 0.49
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 301 LGIFLSFYLLTVLLACWENWRQKKKTLLVAIDRACPESGHPRVLADSFPG--SSPYEGYN 358
           LG+++ FY++TV+L  W   RQ++ +L       CP    P +L+DS     SS    Y+
Sbjct: 234 LGLYV-FYVVTVILCTWIYQRQRRGSLF------CPMPVTPEILSDSEEDRVSSNTNSYD 286

Query: 359 YG 360
           YG
Sbjct: 287 YG 288


>gi|4505205 matrix metalloproteinase 10 preproprotein [Homo sapiens]
          Length = 476

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 8/41 (19%)

Query: 321 RQKKKTLLVAIDR--------ACPESGHPRVLADSFPGSSP 353
           ++KKKT   A D+           E G PR++AD FPG  P
Sbjct: 394 KEKKKTYFFAADKYWRFDENSQSMEQGFPRLIADDFPGVEP 434


>gi|206597509 HIV-1 Rev binding protein isoform 4 [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 18/63 (28%), Positives = 26/63 (41%)

Query: 370 DGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDKNVIRTKQYL 429
           D +  +   GD   G+      PVG+   V S SS   D Y  L ++DS  +   T    
Sbjct: 294 DNIFSAGQGGDQGSGFGTTGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNA 353

Query: 430 YVA 432
           Y +
Sbjct: 354 YTS 356


>gi|206597507 HIV-1 Rev binding protein isoform 3 [Homo sapiens]
          Length = 560

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 18/63 (28%), Positives = 26/63 (41%)

Query: 370 DGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDKNVIRTKQYL 429
           D +  +   GD   G+      PVG+   V S SS   D Y  L ++DS  +   T    
Sbjct: 334 DNIFSAGQGGDQGSGFGTTGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNA 393

Query: 430 YVA 432
           Y +
Sbjct: 394 YTS 396


>gi|206597505 HIV-1 Rev binding protein isoform 1 [Homo sapiens]
          Length = 584

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 18/63 (28%), Positives = 26/63 (41%)

Query: 370 DGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDKNVIRTKQYL 429
           D +  +   GD   G+      PVG+   V S SS   D Y  L ++DS  +   T    
Sbjct: 358 DNIFSAGQGGDQGSGFGTTGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNA 417

Query: 430 YVA 432
           Y +
Sbjct: 418 YTS 420


>gi|38570132 HIV-1 Rev binding protein isoform 2 [Homo sapiens]
          Length = 562

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 18/63 (28%), Positives = 26/63 (41%)

Query: 370 DGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDKNVIRTKQYL 429
           D +  +   GD   G+      PVG+   V S SS   D Y  L ++DS  +   T    
Sbjct: 334 DNIFSAGQGGDQGSGFGTTGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNA 393

Query: 430 YVA 432
           Y +
Sbjct: 394 YTS 396


>gi|5729986 processing of precursor 4 [Homo sapiens]
          Length = 220

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 669 LHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRPNDFASYLLAIGICNLLL 728
           LH L+   IR     L  D    ++   ++   L    + +  +   SY   +GI  +LL
Sbjct: 102 LHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISVTKSKCPSY---VGITGILL 158

Query: 729 YFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFF 766
               +I   +   +R+K+IP L  V T    GF  + +
Sbjct: 159 QETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIY 196


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,459,048
Number of Sequences: 37866
Number of extensions: 1262011
Number of successful extensions: 3510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3500
Number of HSP's gapped (non-prelim): 11
length of query: 832
length of database: 18,247,518
effective HSP length: 111
effective length of query: 721
effective length of database: 14,044,392
effective search space: 10126006632
effective search space used: 10126006632
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.