Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 94538354
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94538354 mitochondrial processing peptidase beta subunit
precursor [Homo sapiens]
(489 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94538354 mitochondrial processing peptidase beta subunit prec... 981 0.0
gi|46593007 ubiquinol-cytochrome c reductase core protein I [Hom... 544 e-155
gi|24308013 peptidase (mitochondrial processing) alpha [Homo sap... 191 1e-48
gi|50592988 ubiquinol-cytochrome c reductase core protein II [Ho... 122 1e-27
gi|156071452 nardilysin isoform b [Homo sapiens] 46 7e-05
gi|156071450 nardilysin isoform a [Homo sapiens] 46 7e-05
gi|155969707 insulin-degrading enzyme [Homo sapiens] 44 3e-04
gi|194294510 kinesin family member C3 isoform 2 [Homo sapiens] 31 2.2
gi|194294508 kinesin family member C3 isoform 3 [Homo sapiens] 31 2.2
gi|94536858 kinesin family member C3 isoform 1 [Homo sapiens] 31 2.2
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 3.8
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 3.8
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 30 5.0
gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo ... 30 6.5
gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens] 30 6.5
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 30 6.5
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 30 6.5
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 29 8.5
gi|226494053 coiled-coil domain containing 42 isoform 1 [Homo sa... 29 8.5
gi|217416392 pleckstrin homology domain containing, family H (wi... 29 8.5
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 29 8.5
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 29 8.5
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 29 8.5
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 29 8.5
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 29 8.5
>gi|94538354 mitochondrial processing peptidase beta subunit
precursor [Homo sapiens]
Length = 489
Score = 981 bits (2536), Expect = 0.0
Identities = 489/489 (100%), Positives = 489/489 (100%)
Query: 1 MAAAAARVVLSSAARRRLWGFSESLLIRGAAGRSLYFGENRLRSTQAATQVVLNVPETRV 60
MAAAAARVVLSSAARRRLWGFSESLLIRGAAGRSLYFGENRLRSTQAATQVVLNVPETRV
Sbjct: 1 MAAAAARVVLSSAARRRLWGFSESLLIRGAAGRSLYFGENRLRSTQAATQVVLNVPETRV 60
Query: 61 TCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 120
TCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE
Sbjct: 61 TCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 120
Query: 121 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 180
LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR
Sbjct: 121 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 180
Query: 181 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIV 240
EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIV
Sbjct: 181 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIV 240
Query: 241 LAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAV 300
LAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAV
Sbjct: 241 LAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAV 300
Query: 301 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDT 360
EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDT
Sbjct: 301 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDT 360
Query: 361 GLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICE 420
GLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICE
Sbjct: 361 GLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICE 420
Query: 421 DIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQI 480
DIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQI
Sbjct: 421 DIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQI 480
Query: 481 RSNMCWLRD 489
RSNMCWLRD
Sbjct: 481 RSNMCWLRD 489
>gi|46593007 ubiquinol-cytochrome c reductase core protein I [Homo
sapiens]
Length = 480
Score = 544 bits (1402), Expect = e-155
Identities = 258/448 (57%), Positives = 341/448 (76%), Gaps = 1/448 (0%)
Query: 42 LRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAH 101
LRST Q + VPET+V+ L++GLRVASE S TCTVG+WID GSR+E EKNNG +
Sbjct: 32 LRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGY 91
Query: 102 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 161
FLEH+AFKGTK R LE E+E+MGAHLNAY++RE T YY KA SKDLP+AVE+L DI+
Sbjct: 92 FLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIV 151
Query: 162 QNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSI 221
QN +L +++IE+ER VILREMQE + ++++VVF+YLHATA+Q T L + + GP+EN++ +
Sbjct: 152 QNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKL 211
Query: 222 SRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTH-KGEIPALPPCKFT 280
SR DL +Y++THYK PR+VLAAAGGV H +LLDLA+ H G T+ + +P L PC+FT
Sbjct: 212 SRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQKHLGGIPWTYAEDAVPTLTPCRFT 271
Query: 281 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQL 340
GSEIR RDD +P AH+AIAVE GWA PD + L VAN +IG++D ++GGG++LSS LA
Sbjct: 272 GSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLASG 331
Query: 341 TCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARA 400
LC SFQ+F+ Y +TGL G + VC+ + DM+ V+Q +WMRLCTS TESEVAR
Sbjct: 332 AVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARG 391
Query: 401 RNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYN 460
+N+L+ ++ LDG+TP+CEDIGR +L Y RRIP+ E E+RI V+A +RE+C+KYIY+
Sbjct: 392 KNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYD 451
Query: 461 RSPAIAAVGPIKQLPDFKQIRSNMCWLR 488
+ PA+A GPI+QLPD+ +IRS M WLR
Sbjct: 452 QCPAVAGYGPIEQLPDYNRIRSGMFWLR 479
>gi|24308013 peptidase (mitochondrial processing) alpha [Homo
sapiens]
Length = 525
Score = 191 bits (485), Expect = 1e-48
Identities = 135/445 (30%), Positives = 233/445 (52%), Gaps = 21/445 (4%)
Query: 57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RS 115
ET+VT L++GLRVAS++ CTVG+ I++GSRYE + +G AHFLE +AF T + S
Sbjct: 66 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDS 125
Query: 116 QLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERER 175
+ ++ L +E G + TSR+ T+Y A SK L V +LAD++ L + E+E R
Sbjct: 126 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTR 185
Query: 176 GVILREMQE--VETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTH 233
+ E+++ + + + ++ + +H AY+ +G PTEN+ I+R+ L Y+ +
Sbjct: 186 MAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHSYLRNY 245
Query: 234 YKGPRIVLAAAGGVSHDELLDLA-KFHFGDSLCTHKGEIPAL--PPCKFTGSEIRVRDDK 290
Y R+VLA GV H+ L+D A K+ G E + ++TG ++ D
Sbjct: 246 YTPDRMVLAGV-GVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKLERDM 304
Query: 291 M----------PLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDR-SFGG-GMNLSSKL- 337
L H+ + +E+ + D I V N ++G S GG G + S+L
Sbjct: 305 SNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLY 364
Query: 338 AQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 397
+ + ++ S++ SY DTGL ++ + V +M+ ++ KE++ + +V E+
Sbjct: 365 LNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVDTVEL 424
Query: 398 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKY 457
RA+ L + +++ L+ I ED+GRQ+L R EL I V E ++ V +K
Sbjct: 425 ERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKM 484
Query: 458 IYNRSPAIAAVGPIKQLPDFKQIRS 482
+ + PA+AA+G + LP ++ I++
Sbjct: 485 LRGK-PAVAALGDLTDLPTYEHIQT 508
>gi|50592988 ubiquinol-cytochrome c reductase core protein II [Homo
sapiens]
Length = 453
Score = 122 bits (305), Expect = 1e-27
Identities = 107/437 (24%), Positives = 189/437 (43%), Gaps = 11/437 (2%)
Query: 41 RLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 100
++++T A + T L +GL +AS ++ +GL+I AGSRYE+ N GT
Sbjct: 21 KVKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTT 80
Query: 101 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 160
H L + TK S + IE +G L+ +RE Y + D+ +E L ++
Sbjct: 81 HLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNV 140
Query: 161 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 220
E+ + + + N Q V + LHA AY+N AL + P I
Sbjct: 141 TTAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRN-ALANPLYCPDYRIGK 199
Query: 221 ISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFT 280
++ ++L ++ H+ R+ L GVSH L +A+ L G + +
Sbjct: 200 VTSEELHYFVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNMRGGLGLSGAKANYR 254
Query: 281 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQL 340
G EIR ++ L H A E+ + V ++G G N +S L Q
Sbjct: 255 GGEIREQNGD-SLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPH-VKRGSNTTSHLHQA 312
Query: 341 TCHG-NLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCT-SVTESEVA 398
+FN SY+D+GL+G+Y + +++ D++ + + +++ ++V
Sbjct: 313 VAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQ 372
Query: 399 RARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYI 458
A+N LK L+ ++ S E++G Q L +P + +ID+V I K++
Sbjct: 373 AAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFV 432
Query: 459 YNRSPAIAAVGPIKQLP 475
+ ++AA G + P
Sbjct: 433 SGQK-SMAASGNLGHTP 448
>gi|156071452 nardilysin isoform b [Homo sapiens]
Length = 1151
Score = 46.2 bits (108), Expect = 7e-05
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 83 LWIDAGSRYENEKNNGTAHFLEHMAFKGT-KKRSQLDLELEIENMGAHLNAYTSREQTVY 141
L + GS + + G AHFLEHM F G+ K + + ++ G NA T E+TV+
Sbjct: 215 LCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCERTVF 274
Query: 142 YAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQ---EVETNLQEVVFDYLH 198
K A++ A + + I+RE + E Q + N +E++F L
Sbjct: 275 QFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLARPSDANRKEMLFGSL- 333
Query: 199 ATAYQNTALGRTILGPTENIKSISRKDLVD-----------YITTHY 234
A +G+ G E +K RK+ +D Y ++HY
Sbjct: 334 --ARPGHPMGKFFWGNAETLKHEPRKNNIDTHARLREFWMRYYSSHY 378
>gi|156071450 nardilysin isoform a [Homo sapiens]
Length = 1219
Score = 46.2 bits (108), Expect = 7e-05
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 83 LWIDAGSRYENEKNNGTAHFLEHMAFKGT-KKRSQLDLELEIENMGAHLNAYTSREQTVY 141
L + GS + + G AHFLEHM F G+ K + + ++ G NA T E+TV+
Sbjct: 283 LCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCERTVF 342
Query: 142 YAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQ---EVETNLQEVVFDYLH 198
K A++ A + + I+RE + E Q + N +E++F L
Sbjct: 343 QFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLARPSDANRKEMLFGSL- 401
Query: 199 ATAYQNTALGRTILGPTENIKSISRKDLVD-----------YITTHY 234
A +G+ G E +K RK+ +D Y ++HY
Sbjct: 402 --ARPGHPMGKFFWGNAETLKHEPRKNNIDTHARLREFWMRYYSSHY 446
>gi|155969707 insulin-degrading enzyme [Homo sapiens]
Length = 1019
Score = 43.9 bits (102), Expect = 3e-04
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 9/202 (4%)
Query: 63 LESGLRVAS-EDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RSQLDLE 120
L +G++V D + L + GS + G +HF EHM F GTKK + +
Sbjct: 69 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKKYPKENEYS 128
Query: 121 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 180
+ NA+TS E T YY + L A++ A E+ +RE +
Sbjct: 129 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDS 188
Query: 181 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSIS-------RKDLVDYITTH 233
E ++ N +F AT + G +++ R++L+ + + +
Sbjct: 189 EHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAY 248
Query: 234 YKGPRIVLAAAGGVSHDELLDL 255
Y + + G S D+L +L
Sbjct: 249 YSSNLMAVCVLGRESLDDLTNL 270
>gi|194294510 kinesin family member C3 isoform 2 [Homo sapiens]
Length = 826
Score = 31.2 bits (69), Expect = 2.2
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 122 EIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILRE 181
E + HL + ++ V K + L + ++ A + + E+E+ER G +L E
Sbjct: 274 ESQARNQHLQEQVAMQRQVL--KEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEE 331
Query: 182 MQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKG 236
MQ +E + + + + A+ + G N+ ++ + + +T Y G
Sbjct: 332 MQSLEEDKNRAIEEAFARAQVEMKAVHENLAGVRTNL--LTLQPALRTLTNDYNG 384
>gi|194294508 kinesin family member C3 isoform 3 [Homo sapiens]
Length = 687
Score = 31.2 bits (69), Expect = 2.2
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 122 EIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILRE 181
E + HL + ++ V K + L + ++ A + + E+E+ER G +L E
Sbjct: 135 ESQARNQHLQEQVAMQRQVL--KEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEE 192
Query: 182 MQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKG 236
MQ +E + + + + A+ + G N+ ++ + + +T Y G
Sbjct: 193 MQSLEEDKNRAIEEAFARAQVEMKAVHENLAGVRTNL--LTLQPALRTLTNDYNG 245
>gi|94536858 kinesin family member C3 isoform 1 [Homo sapiens]
Length = 833
Score = 31.2 bits (69), Expect = 2.2
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 122 EIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILRE 181
E + HL + ++ V K + L + ++ A + + E+E+ER G +L E
Sbjct: 274 ESQARNQHLQEQVAMQRQVL--KEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEE 331
Query: 182 MQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKG 236
MQ +E + + + + A+ + G N+ ++ + + +T Y G
Sbjct: 332 MQSLEEDKNRAIEEAFARAQVEMKAVHENLAGVRTNL--LTLQPALRTLTNDYNG 384
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 30.4 bits (67), Expect = 3.8
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 119 LELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVI 178
L LE EN + ++T+ +AK +L ++ +L D I S + + ++ + G++
Sbjct: 2719 LHLEAENQIKKCDIRNKMKETILWAKNLLGELNPSIPLLPDDIL-SQIRKCKVTHD-GIL 2776
Query: 179 LREMQEVETNLQEVVFDYLHATAYQNTALGRTI 211
R+ Q VE+ +EV T Y+ + L T+
Sbjct: 2777 ARQ-QSVESLAEEVKDKVPSLTTYEGSDLNNTL 2808
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 30.4 bits (67), Expect = 3.8
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 119 LELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVI 178
L LE EN + ++T+ +AK +L ++ +L D I S + + ++ + G++
Sbjct: 2719 LHLEAENQIKKCDIRNKMKETILWAKNLLGELNPSIPLLPDDIL-SQIRKCKVTHD-GIL 2776
Query: 179 LREMQEVETNLQEVVFDYLHATAYQNTALGRTI 211
R+ Q VE+ +EV T Y+ + L T+
Sbjct: 2777 ARQ-QSVESLAEEVKDKVPSLTTYEGSDLNNTL 2808
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 30.0 bits (66), Expect = 5.0
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 114 RSQLDLELEIENMG-AHLNAYTSREQTV-YYAKAFSKDLPRAVEILADIIQNSTLGEAEI 171
+ QLD +LE + ++L + EQ V + K+L +E L + I+ A+
Sbjct: 1076 KQQLDEKLEKKEFEISNLISKIEDEQAVEIQLQKKIKELQARIEELGEEIEAERASRAKA 1135
Query: 172 ERERGVILREMQEVETNLQE 191
E++R + RE++E+ L+E
Sbjct: 1136 EKQRSDLSRELEEISERLEE 1155
>gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo
sapiens]
Length = 1140
Score = 29.6 bits (65), Expect = 6.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 30 AAGRSLYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLST-CTVGLWIDAG 88
A GR+LY+ + Q Q+ E V CL+ + + +GLS C +GLW D
Sbjct: 511 AVGRALYYLQIH---PQELRQISHTEMEHEVACLD--ITPLGDSNGLSPLCAIGLWTDIS 565
Query: 89 SR 90
+R
Sbjct: 566 AR 567
>gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens]
Length = 1140
Score = 29.6 bits (65), Expect = 6.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 30 AAGRSLYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLST-CTVGLWIDAG 88
A GR+LY+ + Q Q+ E V CL+ + + +GLS C +GLW D
Sbjct: 511 AVGRALYYLQIH---PQELRQISHTEMEHEVACLD--ITPLGDSNGLSPLCAIGLWTDIS 565
Query: 89 SR 90
+R
Sbjct: 566 AR 567
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 29.6 bits (65), Expect = 6.5
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 89 SRYENEKNNGTAHFLEH-----MAFKGTKKRSQLDLELEIENMGAHLNAYTSREQT 139
S+ E++KN+ LE + +G + R DLE E+E M A LNA RE+T
Sbjct: 74 SKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNA-ALREKT 128
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 29.6 bits (65), Expect = 6.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQE 191
K+L +E L + I+ A+IE++R + RE++E+ L+E
Sbjct: 1113 KELQARIEELEEEIEAEHTLRAKIEKQRSDLARELEEISERLEE 1156
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 29.3 bits (64), Expect = 8.5
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 114 RSQLDLELEIENMGAH-LNAYTSREQTV-YYAKAFSKDLPRAVEILADIIQNSTLGEAEI 171
+ QLD L+ ++ + LNA EQ + + K+L +E L + ++ A++
Sbjct: 1073 KQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAKV 1132
Query: 172 ERERGVILREMQEVETNLQE 191
E+ R + RE++E+ L+E
Sbjct: 1133 EKLRSDLSRELEEISERLEE 1152
>gi|226494053 coiled-coil domain containing 42 isoform 1 [Homo
sapiens]
Length = 316
Score = 29.3 bits (64), Expect = 8.5
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 36/162 (22%)
Query: 104 EHMAFKGTKKRSQLDLELEIENMGAHLNAY------------TSREQTVYYAKAFSKDLP 151
+HM +K+ + L LE + + A L Y S + ++ A K L
Sbjct: 120 QHMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSEFEEIHEVIARYKTL- 178
Query: 152 RAVEILADIIQNSTLGEAEIERERGVILREMQEVETNL------------------QEVV 193
V + D++Q++ G+ +IER + + R M+E + + V+
Sbjct: 179 --VSMRHDLMQSAQEGQEKIERAKARLARYMEEKDDEILQQNNELARLQMRFDRARSNVI 236
Query: 194 FDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYK 235
F QNTA +T+L T + ++ +L ++ H K
Sbjct: 237 FWESRWAHIQNTAAKKTLLLGTIKMATL---NLFQIVSKHLK 275
>gi|217416392 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 2 [Homo sapiens]
Length = 1493
Score = 29.3 bits (64), Expect = 8.5
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 131 NAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILRE---MQEVET 187
N TS +T Y K +DL ++ D+IQN E ++E ++ + ++E ++E
Sbjct: 74 NIQTSESETRLYNKC--QDLESLIQEKDDVIQNL---ELQLEEQKQIRIQEAKIIEEKAA 128
Query: 188 NLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRK 224
++E V L+ +N L TE I+++ K
Sbjct: 129 KIKEWVTVKLNELELENQNLRLINQNQTEEIRTMQSK 165
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQE 191
K+L +E L + I+ A+ E++R + RE++E+ L+E
Sbjct: 1113 KELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEE 1156
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQE 191
K+L +E L + I+ A+ E++R + RE++E+ L+E
Sbjct: 1115 KELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEE 1158
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQE 191
K+L +E L + I+ A+ E++R + RE++E+ L+E
Sbjct: 1115 KELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEE 1158
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 29.3 bits (64), Expect = 8.5
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 103 LEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQ 162
LE K + SQL L +E E + L A ++ K+L E L + ++
Sbjct: 1125 LEEKLKKKDSELSQLSLRVEDEQL---LGAQMQKK---------IKELQARAEELEEELE 1172
Query: 163 NSTLGEAEIERERGVILREMQEVETNLQE 191
A +E++R RE++E+ L+E
Sbjct: 1173 AERAARARVEKQRAEAARELEELSERLEE 1201
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQE 191
K+L +E L + I+ A+ E++R + RE++E+ L+E
Sbjct: 1113 KELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEE 1156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,240,981
Number of Sequences: 37866
Number of extensions: 720062
Number of successful extensions: 1776
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1733
Number of HSP's gapped (non-prelim): 40
length of query: 489
length of database: 18,247,518
effective HSP length: 106
effective length of query: 383
effective length of database: 14,233,722
effective search space: 5451515526
effective search space used: 5451515526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.