Guide to the Human Genome
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Name: PMPCA Sequence: fasta or formatted (525aa) NCBI GI: 24308013
Description:

peptidase (mitochondrial processing) alpha

Referenced in:

Mitochondria
Oxidative Phosphorylation
Peptide-processing Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         39           2
 C cysteine            1.7          9           1
 D aspartate           5.0         26           1
 E glutamate           6.9         36           2
 F phenylalanine       3.6         19           1
 G glycine             7.6         40           4
 H histidine           2.9         15           2
 I isoleucine          3.8         20           2
 K lysine              4.0         21           1
 L leucine            11.2         59           2
 M methionine          3.6         19           3
 N asparagine          3.0         16           1
 P proline             5.1         27           2
 Q glutamine           2.3         12           1
 R arginine            7.0         37           2
 S serine              6.9         36           2
 T threonine           6.5         34           2
 V valine              7.6         40           2
 W tryptophan          0.6          3           1
 Y tyrosine            3.2         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peptidase (mitochondrial processing) alpha 
PMPCB                 0.162   mitochondrial processing peptidase beta subunit prec...
UQCRC1                0.137   ubiquinol-cytochrome c reductase core protein I [Hom...
UQCRC2                0.111   ubiquinol-cytochrome c reductase core protein II [Ho...
NRD1                  0.016   nardilysin isoform b 
NRD1                  0.016   nardilysin isoform a 
IDE                   0.015   insulin-degrading enzyme 
SEPT12                0.006   septin 12 isoform 1 
SEPT12                0.006   septin 12 isoform 2 
NARG1L                0.005   NMDA receptor regulated 1-like protein isoform 1 [Ho...
NARG1L                0.005   NMDA receptor regulated 1-like protein isoform 3 [H...
NARG1L                0.005   NMDA receptor regulated 1-like protein isoform 2 [Ho...
TRPM4                 0.005   transient receptor potential cation channel, subfami...
ACOX2                 0.004   acyl-Coenzyme A oxidase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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