Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 8923625

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens]
         (305 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens]           603   e-173
gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens]             603   e-173
gi|19923790 rab3 GTPase-activating protein, non-catalytic subuni...    31   1.2  
gi|94538366 transient receptor potential cation channel, subfami...    31   1.6  
gi|47174859 tripartite motif-containing 46 [Homo sapiens]              30   2.0  
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...    30   2.7  
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...    30   2.7  
gi|89276769 mitogen-activated protein kinase 4 [Homo sapiens]          30   2.7  
gi|13129060 transmembrane protein 38A [Homo sapiens]                   30   3.5  
gi|4504341 histone acetyltransferase 1 [Homo sapiens]                  29   4.5  
gi|154091312 transient receptor potential cation channel, subfam...    29   4.5  
gi|154091308 transient receptor potential cation channel, subfam...    29   4.5  
gi|154091310 transient receptor potential cation channel, subfam...    29   4.5  
gi|154091320 transient receptor potential cation channel, subfam...    29   4.5  
gi|154091318 transient receptor potential cation channel, subfam...    29   4.5  
gi|154091316 transient receptor potential cation channel, subfam...    29   4.5  
gi|154091314 transient receptor potential cation channel, subfam...    29   4.5  
gi|16418391 zinc finger, imprinted 3 [Homo sapiens]                    29   4.5  
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]      29   5.9  
gi|50658082 centrosomal protein 70 kDa [Homo sapiens]                  29   5.9  
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]    29   5.9  
gi|164607124 Fanconi anemia, complementation group I isoform 1 [...    28   7.7  
gi|82830440 Fanconi anemia, complementation group I isoform 2 [H...    28   7.7  

>gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens]
          Length = 305

 Score =  603 bits (1554), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60
           MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
Sbjct: 1   MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60

Query: 61  AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120
           AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
Sbjct: 61  AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120

Query: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180
           LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
Sbjct: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180

Query: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240
           VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
Sbjct: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240

Query: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300
           DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
Sbjct: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300

Query: 301 LRIRD 305
           LRIRD
Sbjct: 301 LRIRD 305


>gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens]
          Length = 305

 Score =  603 bits (1554), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60
           MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
Sbjct: 1   MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60

Query: 61  AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120
           AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
Sbjct: 61  AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120

Query: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180
           LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
Sbjct: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180

Query: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240
           VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
Sbjct: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240

Query: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300
           DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
Sbjct: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300

Query: 301 LRIRD 305
           LRIRD
Sbjct: 301 LRIRD 305


>gi|19923790 rab3 GTPase-activating protein, non-catalytic subunit
           [Homo sapiens]
          Length = 1393

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 68  HAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILL 127
           H+VA + +    E K S  V+G  + A  D W E LS   +Y+    KL  K LE C++L
Sbjct: 845 HSVAAQISNNMTEKKFSQTVLGADSEALTDSW-EALSLDTEYW----KLLLKQLEDCLIL 899

Query: 128 YSKMQEPG 135
            + +   G
Sbjct: 900 QTLLHSKG 907


>gi|94538366 transient receptor potential cation channel, subfamily
           M, member 1 [Homo sapiens]
          Length = 1603

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L  MD W  +  W++  Y V   L  K+ E+       M EPG +   +  WLQ+    N
Sbjct: 850 LVRMDGWPSLQEWIVISYIVSLALE-KIREIL------MSEPGKLSQKIKVWLQE--YWN 900

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A++ F +  +L
Sbjct: 901 ITDLVAISTFMIGAIL 916


>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
          Length = 759

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 176 EAEELVVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGS 224
           E  +LV G  A  EE+R  +LQAI   +Q++    S   +  +  L+GS
Sbjct: 312 EVSQLVRGLGAVLEEKRASLLQAIEECQQERLARLSAQIQEHRSLLDGS 360


>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
           [Homo sapiens]
          Length = 994

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 24/132 (18%)

Query: 48  HLDFRAALETCERAWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVL 107
           H D +  + T    W S AN    +  AG      C     G++A             +L
Sbjct: 562 HFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRAS------------LL 609

Query: 108 QYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQ-------NLPEYGALA 160
             YQ+PE L   + ELC+ +  K+   G +   +   +  P+N+       +L E  AL 
Sbjct: 610 DDYQLPEILRTPLEELCLQI--KILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALD 667

Query: 161 EFHVQRVLLPLG 172
           +   Q  L PLG
Sbjct: 668 K---QEELTPLG 676


>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
           [Homo sapiens]
          Length = 1008

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 24/132 (18%)

Query: 48  HLDFRAALETCERAWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVL 107
           H D +  + T    W S AN    +  AG      C     G++A             +L
Sbjct: 576 HFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRAS------------LL 623

Query: 108 QYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQ-------NLPEYGALA 160
             YQ+PE L   + ELC+ +  K+   G +   +   +  P+N+       +L E  AL 
Sbjct: 624 DDYQLPEILRTPLEELCLQI--KILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALD 681

Query: 161 EFHVQRVLLPLG 172
           +   Q  L PLG
Sbjct: 682 K---QEELTPLG 690


>gi|89276769 mitogen-activated protein kinase 4 [Homo sapiens]
          Length = 587

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 183 GSAAFGEERRLDVLQAIHTARQQ-QKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLWD 241
           GSA   E+ ++D  +  H++ ++  +Q HS  E A + +   S  +K  S   L + LW 
Sbjct: 385 GSAPLAEDVQVDPRKDSHSSSERFLEQSHSSMERAFEADYGRSCDYKVGSPSYLDKLLWR 444

Query: 242 SAVSHFFSLP 251
               H +S P
Sbjct: 445 DNKPHHYSEP 454


>gi|13129060 transmembrane protein 38A [Homo sapiens]
          Length = 299

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 221 LEGSVSHKFLSLPMLVRQLWDSAVSHFF--SLPFKKSLLAALILCLLVVRFDPASPSSLH 278
           ++GS      +   L+R +W    +     S P K SL  A++  L   R+ P S +SL 
Sbjct: 154 VKGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTRWLPVSKASLI 213

Query: 279 FLYKL 283
           F++ L
Sbjct: 214 FIFTL 218


>gi|4504341 histone acetyltransferase 1 [Homo sapiens]
          Length = 419

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 106 VLQYYQVPEKLPPKVLELCILLYSKMQEPGA-VLDVVGAW-------LQDPANQNLPEYG 157
           V  YY  P+K  P+V ++ IL   + Q  GA +L+ V  +       L   A      Y 
Sbjct: 224 VYNYYVYPDKTRPRVSQMLILTPFQGQGHGAQLLETVHRYYTEFPTVLDITAEDPSKSYV 283

Query: 158 ALAEFHVQRVLLPLGCLSEAEELVVGSAAFGEERRLDVLQAIHTARQQQKQ 208
            L +F + ++   L C S  E+L+ G   F E+  ++  Q     +Q  ++
Sbjct: 284 KLRDFVLVKLCQDLPCFSR-EKLMQG---FNEDMAIEAQQKFKINKQHARR 330


>gi|154091312 transient receptor potential cation channel, subfamily
           M, member 3 isoform b [Homo sapiens]
          Length = 1566

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L +M+RW     W++  Y     +  K+ E+       M EPG +L  V  WLQ+    N
Sbjct: 751 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 801

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A+  F V  +L
Sbjct: 802 VTDLIAILLFSVGMIL 817


>gi|154091308 transient receptor potential cation channel, subfamily
           M, member 3 isoform f [Homo sapiens]
          Length = 1579

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L +M+RW     W++  Y     +  K+ E+       M EPG +L  V  WLQ+    N
Sbjct: 764 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 814

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A+  F V  +L
Sbjct: 815 VTDLIAILLFSVGMIL 830


>gi|154091310 transient receptor potential cation channel, subfamily
           M, member 3 isoform g [Homo sapiens]
          Length = 1569

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L +M+RW     W++  Y     +  K+ E+       M EPG +L  V  WLQ+    N
Sbjct: 754 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 804

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A+  F V  +L
Sbjct: 805 VTDLIAILLFSVGMIL 820


>gi|154091320 transient receptor potential cation channel, subfamily
           M, member 3 isoform a [Homo sapiens]
          Length = 1554

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L +M+RW     W++  Y     +  K+ E+       M EPG +L  V  WLQ+    N
Sbjct: 739 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 789

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A+  F V  +L
Sbjct: 790 VTDLIAILLFSVGMIL 805


>gi|154091318 transient receptor potential cation channel, subfamily
           M, member 3 isoform d [Homo sapiens]
          Length = 1544

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L +M+RW     W++  Y     +  K+ E+       M EPG +L  V  WLQ+    N
Sbjct: 729 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 779

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A+  F V  +L
Sbjct: 780 VTDLIAILLFSVGMIL 795


>gi|154091316 transient receptor potential cation channel, subfamily
           M, member 3 isoform e [Homo sapiens]
          Length = 1556

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L +M+RW     W++  Y     +  K+ E+       M EPG +L  V  WLQ+    N
Sbjct: 741 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 791

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A+  F V  +L
Sbjct: 792 VTDLIAILLFSVGMIL 807


>gi|154091314 transient receptor potential cation channel, subfamily
           M, member 3 isoform k [Homo sapiens]
          Length = 1707

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 93  LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
           L +M+RW     W++  Y     +  K+ E+       M EPG +L  V  WLQ+    N
Sbjct: 892 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 942

Query: 153 LPEYGALAEFHVQRVL 168
           + +  A+  F V  +L
Sbjct: 943 VTDLIAILLFSVGMIL 958


>gi|16418391 zinc finger, imprinted 3 [Homo sapiens]
          Length = 472

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 186 AFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNL 221
           AFGE+ +LD  Q  H   +  K E+ G+   QK NL
Sbjct: 203 AFGEKWKLDKHQKTHAEERPYKCENCGNAYKQKSNL 238


>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
          Length = 1544

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 31   RAPAVDLLEEAADL---LVVHLDFRAALETCE---RAWQSLA-NHAVAEEPAGTSLEVKC 83
            R P +D L E       + VHL+    LET     +AW+  A N  + E    + LEV C
Sbjct: 1032 RVPVLDTLIELVTRGRSIPVHLNSLPRLETLVAEVQAWKECAVNTFLTENSPYSLLEVLC 1091

Query: 84   SLCVVGIQALAEMDR 98
              C +G+  L    R
Sbjct: 1092 PRCDIGLLGLKRKQR 1106


>gi|50658082 centrosomal protein 70 kDa [Homo sapiens]
          Length = 597

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 196 LQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLWDS 242
           ++ IHT RQ ++ E    EE    NL+ S ++K L L  L  QL +S
Sbjct: 224 IRKIHTQRQYKEDESQSEEENDYRNLDASPTYKGL-LMSLQNQLKES 269


>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
          Length = 1009

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 20  RSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCERA 61
           +S+ PV A P RA ++DLLE+    +  +LD  AAL+   +A
Sbjct: 553 KSTGPVPAPPDRAASIDLLED----VFSNLDMEAALQPLGQA 590


>gi|164607124 Fanconi anemia, complementation group I isoform 1
           [Homo sapiens]
          Length = 1328

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 100 QEVLSWVLQYYQV-PEKLPPKVLELCILLYS---KMQEP 134
           Q +LS + Q+Y+  P+ LPP  LE CIL       +QEP
Sbjct: 625 QTLLSQLKQFYEPKPDLLPPLKLEACILTQGDKISLQEP 663


>gi|82830440 Fanconi anemia, complementation group I isoform 2 [Homo
           sapiens]
          Length = 1268

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 100 QEVLSWVLQYYQV-PEKLPPKVLELCILLYS---KMQEP 134
           Q +LS + Q+Y+  P+ LPP  LE CIL       +QEP
Sbjct: 625 QTLLSQLKQFYEPKPDLLPPLKLEACILTQGDKISLQEP 663


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,874,316
Number of Sequences: 37866
Number of extensions: 521993
Number of successful extensions: 1685
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 23
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press