Guide to the Human Genome
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Name: C2orf7 Sequence: fasta or formatted (188aa) NCBI GI: 14150090
Description:

chromosome 2 open reading frame 7

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         15           2
 C cysteine            2.7          5           2
 D aspartate           5.3         10           1
 E glutamate           4.8          9           1
 F phenylalanine       6.4         12           2
 G glycine             8.0         15           2
 H histidine           3.2          6           1
 I isoleucine          8.5         16           2
 K lysine              1.1          2           1
 L leucine             8.5         16           2
 M methionine          1.6          3           1
 N asparagine          2.1          4           1
 P proline             6.9         13           2
 Q glutamine           4.8          9           1
 R arginine            5.3         10           2
 S serine              5.3         10           1
 T threonine           4.8          9           1
 V valine              6.9         13           2
 W tryptophan          2.7          5           1
 Y tyrosine            3.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 2 open reading frame 7 
EDEM3                 0.070   ER degradation enhancer, mannosidase alpha-like 3 [...
RNF148                0.035   ring finger protein 148 
RNF133                0.030   ring finger protein 133 
SPPL2B                0.022   signal peptide peptidase-like 2B isoform 3 
SPPL2B                0.022   signal peptide peptidase-like 2B isoform 2 
SPPL2A                0.022   signal peptide peptidase-like 2A 
RNF128                0.019   ring finger protein 128 isoform 2 
HMCN2                 0.013   PREDICTED: hemicentin 2 
LOC100289200          0.013   PREDICTED: hypothetical protein XP_002342997 
LOC100292387          0.013   PREDICTED: similar to hemicentin 2 
RNF130                0.013   ring finger protein 130 
C3                    0.011   complement component 3 precursor 
LOC653879             0.011   PREDICTED: similar to complement component 3 
RNF128                0.011   ring finger protein 128 isoform 1 
RNF149                0.011   ring finger protein 149 
IMP5                  0.008   intramembrane protease 5 
MLL3                  0.005   myeloid/lymphoid or mixed-lineage leukemia 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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