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Search of human proteins with 14149805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14149805 hypothetical protein LOC84080 [Homo sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14149805 hypothetical protein LOC84080 [Homo sapiens] 704 0.0
gi|22035602 mitogen-activated protein kinase kinase kinase kinas... 39 0.007
gi|154816198 transcription elongation factor B polypeptide 3C-li... 39 0.007
gi|156938279 transcription elongation factor B polypeptide 3C [H... 39 0.007
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 39 0.009
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 39 0.009
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 39 0.009
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 39 0.009
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 39 0.009
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 39 0.009
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 39 0.009
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 39 0.009
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 39 0.009
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 37 0.020
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ... 37 0.020
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 37 0.020
gi|148746195 trichohyalin [Homo sapiens] 37 0.026
gi|150170670 piccolo isoform 2 [Homo sapiens] 37 0.034
gi|150378539 piccolo isoform 1 [Homo sapiens] 37 0.034
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 37 0.034
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 37 0.034
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 37 0.034
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 36 0.044
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 36 0.044
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 36 0.044
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 36 0.044
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa... 36 0.044
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 36 0.058
gi|21450721 enkurin [Homo sapiens] 36 0.058
gi|125628665 hypothetical protein LOC388284 [Homo sapiens] 36 0.058
>gi|14149805 hypothetical protein LOC84080 [Homo sapiens]
Length = 346
Score = 704 bits (1816), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MCEGPSRISGPIPPDPTLCPDNYRRPTSAQGRLEGNALKLDLLTSDRALDTTAPRGPCIG 60
MCEGPSRISGPIPPDPTLCPDNYRRPTSAQGRLEGNALKLDLLTSDRALDTTAPRGPCIG
Sbjct: 1 MCEGPSRISGPIPPDPTLCPDNYRRPTSAQGRLEGNALKLDLLTSDRALDTTAPRGPCIG 60
Query: 61 PGAGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQER 120
PGAGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQER
Sbjct: 61 PGAGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQER 120
Query: 121 SREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHV 180
SREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHV
Sbjct: 121 SREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHV 180
Query: 181 SSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNAT 240
SSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNAT
Sbjct: 181 SSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNAT 240
Query: 241 QKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLR 300
QKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLR
Sbjct: 241 QKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLR 300
Query: 301 ELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD 346
ELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD
Sbjct: 301 ELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD 346
>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
isoform 1 [Homo sapiens]
Length = 1166
Score = 38.9 bits (89), Expect = 0.007
Identities = 65/258 (25%), Positives = 95/258 (36%), Gaps = 52/258 (20%)
Query: 93 KRKDPKDHEKENLRRIREIQKRFRE-------QERSREQGQPRPLKALWRSPKYDKVESR 145
+R+ + +KE RR+ E Q+R RE ++R REQ + R L+ L R K ++ R
Sbjct: 394 ERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERRR 453
Query: 146 --------------VKAQLQEPGPASGT-------ESAHFLRAHSRCGPGLPPPHVSSPQ 184
++ QL+E E A L H R P S Q
Sbjct: 454 AEEEKRRVEREQEYIRRQLEEEQRHLEVLQQQLLQEQAMLLHDHRR------PHPQHSQQ 507
Query: 185 PTPPGPEAKEPGLGVDFIRHNARAAKRA---PRRHSCSLQVLA-QVLEQQRQAQEHYNAT 240
P PP E +P + + A RA P R + VL+ + Q Q++ A
Sbjct: 508 PPPPQQERSKPSFHAPEPKAHYEPADRAREVPVRTTSRSPVLSRRDSPLQGSGQQNSQAG 567
Query: 241 QKGHVPHYLLERRDLWRR-----------EAEARKQSQPDPAMPPG-HTRMPENQRLETL 288
Q+ +E R LW R + S P PG + E R+ +
Sbjct: 568 QRNSTSS--IEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSS 625
Query: 289 TKLLQSQSQLLRELVLLP 306
+K S SQ L V P
Sbjct: 626 SKSEGSPSQRLENAVKKP 643
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 38.9 bits (89), Expect = 0.007
Identities = 47/159 (29%), Positives = 60/159 (37%), Gaps = 27/159 (16%)
Query: 96 DPKDHEKENLRRIREIQKRFRE--QERSREQGQPRPLKALW---RSPKYDKVESRVKAQL 150
DP+D E+ R+ RF E QER + G P A SP++ + R
Sbjct: 86 DPQDPEESASRQ------RFGEALQEREKAWGFPENATAPRSPSHSPEHRRTARRTPPGQ 139
Query: 151 QEPGPASGTESAHFLRAHSRCGPGLPPPHVSSPQ-----PTPPGPEAKEPGLGVDFIRHN 205
Q P P S + R R P PH P P P GPE PG R +
Sbjct: 140 QRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPMPEGPEPAVPGEQPG--RGH 197
Query: 206 ARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNATQKGH 244
A AA+ P +L Q + Q Q E + KGH
Sbjct: 198 AHAAQGGP--------LLGQGCQGQPQG-EAVGSHSKGH 227
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 38.9 bits (89), Expect = 0.007
Identities = 47/159 (29%), Positives = 60/159 (37%), Gaps = 27/159 (16%)
Query: 96 DPKDHEKENLRRIREIQKRFRE--QERSREQGQPRPLKALW---RSPKYDKVESRVKAQL 150
DP+D E+ R+ RF E QER + G P A SP++ + R
Sbjct: 86 DPQDPEESASRQ------RFGEALQEREKAWGFPENATAPRSPSHSPEHRRTARRTPPGQ 139
Query: 151 QEPGPASGTESAHFLRAHSRCGPGLPPPHVSSPQ-----PTPPGPEAKEPGLGVDFIRHN 205
Q P P S + R R P PH P P P GPE PG R +
Sbjct: 140 QRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPMPEGPEPAVPGEQPG--RGH 197
Query: 206 ARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNATQKGH 244
A AA+ P +L Q + Q Q E + KGH
Sbjct: 198 AHAAQGGP--------LLGQGCQGQPQG-EAVGSHSKGH 227
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPG 196
PGP G ++ R H GP +PPP P PPG + PG
Sbjct: 238 PGPGPGPAPPNYSRPHGMGGPNMPPP---GPSGVPPGMPGQPPG 278
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPG 196
PGP G ++ R H GP +PPP P PPG + PG
Sbjct: 238 PGPGPGPAPPNYSRPHGMGGPNMPPP---GPSGVPPGMPGQPPG 278
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPG 196
PGP G ++ R H GP +PPP P PPG + PG
Sbjct: 238 PGPGPGPAPPNYSRPHGMGGPNMPPP---GPSGVPPGMPGQPPG 278
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPG 196
PGP G ++ R H GP +PPP P PPG + PG
Sbjct: 238 PGPGPGPAPPNYSRPHGMGGPNMPPP---GPSGVPPGMPGQPPG 278
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPG 196
PGP G ++ R H GP +PPP P PPG + PG
Sbjct: 238 PGPGPGPAPPNYSRPHGMGGPNMPPP---GPSGVPPGMPGQPPG 278
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPG 196
PGP G ++ R H GP +PPP P PPG + PG
Sbjct: 238 PGPGPGPAPPNYSRPHGMGGPNMPPP---GPSGVPPGMPGQPPG 278
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.5 bits (88), Expect = 0.009
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPG 196
PGP G ++ R H GP +PPP P PPG + PG
Sbjct: 238 PGPGPGPAPPNYSRPHGMGGPNMPPP---GPSGVPPGMPGQPPG 278
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 38.5 bits (88), Expect = 0.009
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 93 KRKDPKDHEKENLRRIREIQKRFREQERSREQGQPRPLKALWRSPKYDKVESRVKAQLQE 152
+ KD K+ KEN + +I E E REQ PR K + R K ++
Sbjct: 536 EEKDEKEDSKENTKEKDKIDGTAEETEE-REQATPRGRKTA-------NSQGRRKGRITR 587
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPGLGVDFIRHNARAAKRA 212
S T A A + PPP P P PP P + EP + AK+
Sbjct: 588 ----SMTNEAAAASAAAAAATEEPPP----PLPPPPEPISTEPVETSRWTEEEMEVAKKG 639
Query: 213 PRRHSCSLQVLAQVLEQQRQAQ---EHYNATQKGHVPHYLLE-RRDLWRREAEARKQSQ 267
H + +A+++ + +AQ ++N ++ ++ + L + ++ R+ E R SQ
Sbjct: 640 LVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKTSRKPREERDVSQ 698
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 38.5 bits (88), Expect = 0.009
Identities = 53/259 (20%), Positives = 86/259 (33%), Gaps = 24/259 (9%)
Query: 56 GPCIGPGAGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRF 115
GP P + E G G L+ + + +S + ++ ++ E+E E ++ F
Sbjct: 851 GPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDF 910
Query: 116 REQERSREQ------GQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHS 169
E+E E+ + + + + + E + +E E F A
Sbjct: 911 EEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGG 970
Query: 170 RCGPGLPPPHVSSPQPTPPGPEAK-------EPGLGVDFIR---HNARAAKRAPRRHSCS 219
G PPP P PP K EPGL ++ R A AP
Sbjct: 971 EVEEGAPPPPTLPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAP------ 1024
Query: 220 LQVLAQVLEQQRQAQEHYNATQKGHVPHYLLERR-DLWRREAEARKQSQPDPAMPPGHTR 278
+ + L Q + + + G P L+E E + D PP T
Sbjct: 1025 -TLAPEALPSQGEVEREGESPAAGPPPQELVEEEPSAPPTLLEEETEDGSDKVQPPPETP 1083
Query: 279 MPENQRLETLTKLLQSQSQ 297
E ET + LQ + Q
Sbjct: 1084 AEEEMETETEAEALQEKEQ 1102
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 37.4 bits (85), Expect = 0.020
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 123 EQGQPRPLKAL--WRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHV 180
E G P P AL W P E + + Q+PGP+ E R + GP PP
Sbjct: 114 EGGGPPPPPALPTWSVPNGPSPEEVEQQKRQQPGPSEHIER----RVSNAGGPPAPPAGG 169
Query: 181 SSPQPTPPGPEAKEPGLGV 199
P P PP P P G+
Sbjct: 170 PPPPPGPPPPPGPPPPPGL 188
>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
sapiens]
Length = 616
Score = 37.4 bits (85), Expect = 0.020
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 4 GPSRISGPIPPDPTLCPDNYRRPTSAQGRLEGNALKLDLLTSDRALDTTAPRGPCIGPGA 63
G + SGP P P ++ P + G+ L SD + T AP +GPGA
Sbjct: 278 GTASYSGPKPSTQHGAPGHFAAPGEG---VYGHTLSSSYTYSDASSSTLAPTSFLLGPGA 334
Query: 64 GEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKD 99
+ E GQR L+ + + +G L R +P D
Sbjct: 335 FKAQESGQRSRAGP-LRPQPLGMGAQGRLPRGNPTD 369
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 37.4 bits (85), Expect = 0.020
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 28/191 (14%)
Query: 117 EQERSREQGQPRP--------LKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAH 168
++ SRE+GQ RP K R+PK + + K + G +S +E L
Sbjct: 1063 QERESREKGQKRPSDGNSGLMAKKQKRTPK--RTSAAAKNEKNGTGQSSDSEDLPVLDNS 1120
Query: 169 SRCGPGLPPPHVSSPQPTPPGPEAKEPGL-GVDFIRHNARAAKRAPRRHSCSLQV----- 222
S+C P + +VS PQ P P + + +H + +PR + S Q+
Sbjct: 1121 SKCTP-VKHLNVSKPQKLARSPARISPHIKDGEKDKHREKHPNSSPRTYKWSFQLNELDN 1179
Query: 223 -----LAQVLEQQRQAQEHYNATQKGHVPHYLLERRDLWRREAE------ARKQSQPDPA 271
L+++ Q Y + K V R+ L +++ E + + D
Sbjct: 1180 MNSTERISFLQEKLQEIRKYYMSLKSEVATIDRRRKRLKKKDREVSHAGASMSSASSDTG 1239
Query: 272 MPPGHTRMPEN 282
M P + P+N
Sbjct: 1240 MSPSSSSPPQN 1250
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 37.0 bits (84), Expect = 0.026
Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 45/269 (16%)
Query: 93 KRKDPKDHEKENL--------RRIREIQKRFREQERSREQGQPRPLKALWRSPKYDKVES 144
KR+D K E++ L RR +E ++FRE+E+ ++ + +PL+ R K+ + E
Sbjct: 1308 KRRDRKSQEEKQLLREEREEKRRRQETDRKFREEEQLLQEREEQPLRRQERDRKFREEEL 1367
Query: 145 RVKAQ----LQEPGPASGTE-SAHFLRAHS--RCGPGLPPPHVSSPQPTPPGPEAKEPGL 197
R + Q L+E E FL+ RC Q +E L
Sbjct: 1368 RHQEQGRKFLEEEQRLRRQERERKFLKEEQQLRC----QEREQQLRQDRDRKFREEEQQL 1423
Query: 198 GVDFIRHNARAAKRAPRRHSCSLQVL--AQVLEQQR-----------QAQEHYNATQKGH 244
R ++ RR + L Q L Q+R Q +E ++
Sbjct: 1424 SRQERDRKFREEEQQVRRQERERKFLEEEQQLRQERHRKFREEEQLLQEREEQQLHRQER 1483
Query: 245 VPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRL---ETLTKLLQSQSQLLRE 301
+L E + L R+E + + + Q + P + E Q+L + K LQ + QL R+
Sbjct: 1484 DRKFLEEEQQLRRQERDRKFREQELRSQEPERKFLEEEQQLHRQQRQRKFLQEEQQLRRQ 1543
Query: 302 LVLLPAGADSLRAQSHRAELDRKLVQVEE 330
R Q R + DRK + E+
Sbjct: 1544 ----------ERGQQRRQDRDRKFREEEQ 1562
Score = 35.0 bits (79), Expect = 0.099
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 93 KRKDPKDHEKENLRRIREIQ--------KRFREQERSREQGQPRPLKALWRSPKYDKVES 144
+ +D K E+E LR+ RE Q ++FRE+E+ R++ + + L+ R KY E
Sbjct: 1767 QERDRKFREEEQLRQEREEQQLRSQESDRKFREEEQLRQEREEQQLRPQQRDGKYRWEEE 1826
Query: 145 RVKAQLQE 152
+++ + QE
Sbjct: 1827 QLQLEEQE 1834
Score = 31.2 bits (69), Expect = 1.4
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 18/175 (10%)
Query: 101 EKENLRRIREIQKRFREQERSREQGQPRPLKALWRSPKYDKV--ESRVKAQLQEPGPASG 158
E++ LRR +E++++FRE+E+ R++ + L+ R +Y K+ E +++ + +E
Sbjct: 1712 EEQQLRR-QELERKFREEEQLRQETEQEQLR---RQERYRKILEEEQLRPEREEQQLRRQ 1767
Query: 159 TESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKE--PGLGVDFIRHNARAAKRAPRRH 216
F R + + S + E ++ +R R K
Sbjct: 1768 ERDRKF-REEEQLRQEREEQQLRSQESDRKFREEEQLRQEREEQQLRPQQRDGKYRWEEE 1826
Query: 217 SCSLQVLAQVLEQQR----QAQEHYNATQKGHVPHYLLERRDLWRREAEARKQSQ 267
L+ Q L Q+R +A+E + +K E ++LW+ E + R+Q +
Sbjct: 1827 QLQLEEQEQRLRQERDRQYRAEEQFATQEKSR-----REEQELWQEEEQKRRQER 1876
Score = 30.4 bits (67), Expect = 2.4
Identities = 49/261 (18%), Positives = 97/261 (37%), Gaps = 48/261 (18%)
Query: 92 LKRKDPKDHEKENL-----------RRIREIQKRFREQERSREQGQPRPLKALWRSPKYD 140
LKR++P++ ++ L +++R Q+ REQ RE+ + R + L R + +
Sbjct: 620 LKREEPEEERRQQLLKSEEQEERRQQQLRREQQERREQRLKREEEEERLEQRLKREHEEE 679
Query: 141 KVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLP--PPHVSSPQPTPPGPEAKEPGLG 198
+ E + + QE +A R +P + S P
Sbjct: 680 RREQELAEEEQE-------------QARERIKSRIPKWQWQLESEADARQSKVYSRPRKQ 726
Query: 199 VDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNATQKGHVPHYLLERRDLWRR 258
R + KR R Q + QQ++ ++ + T + W+
Sbjct: 727 EGQRRRQEQEEKRRRRESELQWQEEERAHRQQQEEEQRRDFTWQ-------------WQA 773
Query: 259 EAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLRELVLLPAGADSLRAQSHR 318
E ++ + Q A PP E + L+++ + RE LP + + + R
Sbjct: 774 EEKSERGRQRLSARPP---------LREQRERQLRAEERQQREQRFLPEEEEKEQRRRQR 824
Query: 319 AELDRKLVQVEEAIKIFSRPK 339
E +++L +EE ++ R +
Sbjct: 825 REREKELQFLEEEEQLQRRER 845
Score = 30.0 bits (66), Expect = 3.2
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 92 LKRKDPKDHEKENLRRIREIQKRFREQERSREQGQPRPLKALWRSPKYDKVESRVKAQLQ 151
L+ + ++ +R ++ ++FRE+E+ R++ + + L R K+ E +V+ Q Q
Sbjct: 1534 LQEEQQLRRQERGQQRRQDRDRKFREEEQLRQEREEQQLSRQERDRKFRLEEQKVRRQEQ 1593
Query: 152 E 152
E
Sbjct: 1594 E 1594
Score = 29.6 bits (65), Expect = 4.1
Identities = 14/59 (23%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 95 KDPKDHEKENLRRIR-EIQKRFREQERSREQGQPRPLKALWRSPKYDKVESRVKAQLQE 152
++P+ +E +++R + ++FRE+E+ ++G+ + L+ R K+ + E +++ Q +E
Sbjct: 1648 EEPQLRRQEREQQLRHDRDRKFREEEQLLQEGEEQQLRRQERDRKFREEEQQLRRQERE 1706
Score = 28.9 bits (63), Expect = 7.1
Identities = 57/241 (23%), Positives = 93/241 (38%), Gaps = 50/241 (20%)
Query: 101 EKENLRRIREIQKRFREQERS----REQGQPRPLKALWRS-PKYDKVESRVKAQLQEPGP 155
E+E RR RE + +++E+ER+ +E+ Q R W++ K ++ R+ A+ P
Sbjct: 734 EQEEKRRRRESELQWQEEERAHRQQQEEEQRRDFTWQWQAEEKSERGRQRLSAR-----P 788
Query: 156 ASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRR 215
+ LRA R Q P E KE +R RR
Sbjct: 789 PLREQRERQLRAEER---------QQREQRFLPEEEEKE--------------QRRRQRR 825
Query: 216 HSCSLQVLAQVLEQQRQAQEHYNATQKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPG 275
+ Q LE++ Q Q A Q L+ + +E + R++SQ
Sbjct: 826 ER---EKELQFLEEEEQLQRRERAQQ--------LQEEEDGLQEDQERRRSQEQRRDQKW 874
Query: 276 HTRMPE--NQRLETLTKLLQSQSQLLRELVLLPAGADSL----RAQSHRAELDRKLVQVE 329
++ E +R TL Q QL +E LL + L R + R E +R+ + E
Sbjct: 875 RWQLEEERKRRRHTLYAKPALQEQLRKEQQLLQEEEEELQREEREKRRRQEQERQYREEE 934
Query: 330 E 330
+
Sbjct: 935 Q 935
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 36.6 bits (83), Expect = 0.034
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 109 REIQKRFREQERSREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAH 168
+ I + E+ +S+ G +P++ ++P+ D K LQ T+ A +R
Sbjct: 237 KSISSQQPEKIKSQPPGTGKPIQGPTQTPQTD----HAKLPLQRDASRPQTKQADIVRGE 292
Query: 169 SRCGPGLPPPHVSSP---QPTPPGPEAKEPG 196
S P LP P S P QPTP P A++PG
Sbjct: 293 S-VKPSLPSP--SKPPIQQPTPGKPPAQQPG 320
Score = 30.4 bits (67), Expect = 2.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 121 SREQGQPRPLKALW--RSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPP 178
+++ G P KA ++P ++ AQ PG S ++ GP PPP
Sbjct: 422 AQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPP 481
Query: 179 HVSSPQPTPPGPEAKEPG 196
QP P P ++PG
Sbjct: 482 Q----QPGPAKPPPQQPG 495
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 36.6 bits (83), Expect = 0.034
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 109 REIQKRFREQERSREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAH 168
+ I + E+ +S+ G +P++ ++P+ D K LQ T+ A +R
Sbjct: 237 KSISSQQPEKIKSQPPGTGKPIQGPTQTPQTD----HAKLPLQRDASRPQTKQADIVRGE 292
Query: 169 SRCGPGLPPPHVSSP---QPTPPGPEAKEPG 196
S P LP P S P QPTP P A++PG
Sbjct: 293 S-VKPSLPSP--SKPPIQQPTPGKPPAQQPG 320
Score = 30.4 bits (67), Expect = 2.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 121 SREQGQPRPLKALW--RSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPP 178
+++ G P KA ++P ++ AQ PG S ++ GP PPP
Sbjct: 422 AQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPP 481
Query: 179 HVSSPQPTPPGPEAKEPG 196
QP P P ++PG
Sbjct: 482 Q----QPGPAKPPPQQPG 495
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 36.6 bits (83), Expect = 0.034
Identities = 46/171 (26%), Positives = 63/171 (36%), Gaps = 39/171 (22%)
Query: 125 GQPRPLKALWRSPKY-------DKVESRVKAQLQEP---GPASGTESAHFLRAHSRCGPG 174
G+ P + W SPK D + S+ A L +P GP SG S C P
Sbjct: 868 GEAGPTRRTWASPKLRASVSPLDLLPSKSTASLTKPHSTGPGSGRSS---------CQPR 918
Query: 175 LPPPHVSSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRR---------HSCSLQVLAQ 225
P +SSP T PE K G A + R PR+ S +
Sbjct: 919 KPALDLSSPPATSQSPEVKG---GTWSQAEKATSLYRQPRKAIAWHHSGPPSGQNRTSES 975
Query: 226 VLEQQRQAQEHYNATQKGHVPHYLLERRDLWRREAEARKQSQPD---PAMP 273
L + RQ++E + P R W +A+ R++S P PA P
Sbjct: 976 SLARPRQSRERSPPVGRKASP-----TRTHWVPQADKRRRSLPSSYRPAQP 1021
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 36.6 bits (83), Expect = 0.034
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 92 LKRKDPKDHEKENLRRIREIQ-KRFREQER-------SREQGQPRPLKALWRSPKYDKVE 143
LK K EK RR REI+ KR RE+ER R++ LK + R P+ DK++
Sbjct: 204 LKNKQRMREEKREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKLK 263
Query: 144 SRVKAQLQEPGPASGTESAHFLRAHSR------------CGPGLPPPHVSSPQPTPPGPE 191
K +L + P G E R ++ G P S + P+
Sbjct: 264 DEPKIKLLKK-PEKGDEKELDKREKAKKLDKENLSDERASGQSCTLPKRSDSELKDEKPK 322
Query: 192 AKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHY 237
E G D+ R R +R R + L + E++R+ +E Y
Sbjct: 323 RPEDESGRDY-REREREYERDQERILRERERLKRQEEERRRQKERY 367
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 36.6 bits (83), Expect = 0.034
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 120 RSREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTE-----SAHFLRAHSRCG-- 172
R++ G R ++++ P + VE R +++L+ P P+ G E S R S
Sbjct: 73 RAQAAGSSREVRSVAPVPLEEPVEGRSESRLRPPPPSEGEEDEELESQELPRGSSGAAAL 132
Query: 173 -PGLP----PPHVSSPQPTPPGPEAKEP 195
PG P PP P P+PP + EP
Sbjct: 133 SPGAPASWQPPPPPQPPPSPPPAQHAEP 160
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 36.2 bits (82), Expect = 0.044
Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 37/244 (15%)
Query: 63 AGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQERSR 122
A ++L RGQ + L ++G PG +++ + +++ ++ ++ Q+ ++ + +
Sbjct: 188 AYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQ 247
Query: 123 EQGQPRPLKALWRSPKYDKVESRVKAQLQE-PGPASGTESAHFLRAHSRCGPGLPPPHVS 181
Q Q +P + P E + Q+ P PA G R P PP
Sbjct: 248 TQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPG----------GRPSPA-PPAAAQ 296
Query: 182 SPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNATQ 241
P PGP +P AP + S LQ+ QQ+Q++
Sbjct: 297 PPAAAVPGPSVPQP----------------APGQPSPVLQL------QQKQSRISPIQKP 334
Query: 242 KGHVPHYLLERRD--LWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLL 299
+G P +L+ R+ L R A ++ + P P R L+ L +LL Q QL
Sbjct: 335 QGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKAL-RLLNFQRQLR 393
Query: 300 RELV 303
+E+V
Sbjct: 394 QEVV 397
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPGL 197
PGP+ G+ HS GP PP VS P PT + + G+
Sbjct: 33 PGPSPGS-------VHSMMGPSPGPPSVSHPMPTMGSTDFPQEGM 70
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 36.2 bits (82), Expect = 0.044
Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 37/244 (15%)
Query: 63 AGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQERSR 122
A ++L RGQ + L ++G PG +++ + +++ ++ ++ Q+ ++ + +
Sbjct: 188 AYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQ 247
Query: 123 EQGQPRPLKALWRSPKYDKVESRVKAQLQE-PGPASGTESAHFLRAHSRCGPGLPPPHVS 181
Q Q +P + P E + Q+ P PA G R P PP
Sbjct: 248 TQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPG----------GRPSPA-PPAAAQ 296
Query: 182 SPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNATQ 241
P PGP +P AP + S LQ+ QQ+Q++
Sbjct: 297 PPAAAVPGPSVPQP----------------APGQPSPVLQL------QQKQSRISPIQKP 334
Query: 242 KGHVPHYLLERRD--LWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLL 299
+G P +L+ R+ L R A ++ + P P R L+ L +LL Q QL
Sbjct: 335 QGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKAL-RLLNFQRQLR 393
Query: 300 RELV 303
+E+V
Sbjct: 394 QEVV 397
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 153 PGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPGL 197
PGP+ G+ HS GP PP VS P PT + + G+
Sbjct: 33 PGPSPGS-------VHSMMGPSPGPPSVSHPMPTMGSTDFPQEGM 70
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 36.2 bits (82), Expect = 0.044
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 249 LLERRDLWRREAEARKQSQPD-PAMPPGHTR-MPENQRLETLTKLLQSQSQLLRELVLLP 306
LL+R+ R+E EAR+Q PD PA PPG R P+ R ++ ++Q L +
Sbjct: 10 LLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAA 69
Query: 307 AG 308
AG
Sbjct: 70 AG 71
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 36.2 bits (82), Expect = 0.044
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Query: 73 GVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQERSREQGQPRPLKA 132
G+ D+ L+ E +LG +D + LRR+R + R R++ER RE+ +PR +
Sbjct: 3 GLSDLELRRELQALGFQPGPITDTTRDVYRNKLRRLRG-EARLRDEERLREEARPRGEER 61
Query: 133 LWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTP 187
L R +A+L+E P +A A R P L P S TP
Sbjct: 62 L-----------REEARLREDAPLRARPAA----ASPRAEPWLSQPASGSAYATP 101
>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
sapiens]
Length = 1819
Score = 36.2 bits (82), Expect = 0.044
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 24/126 (19%)
Query: 94 RKDPKDHEKENLRRIREIQKRFR--EQERSREQGQP--------------RPLKALWRSP 137
R++ D + R +R+ ++R + E+E R+ Q R KALWR
Sbjct: 724 RQEELDDDFSYARELRDRERRLKSLEEELERKARQALVDHYSKLSAEAARREQKALWRIQ 783
Query: 138 KYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHVS---SPQPTPPGPEAKE 194
++ +R++ L++ L+A S PP V PQ T PGPE E
Sbjct: 784 RHRLESARLRFLLEDE-----KHIQEMLKAVSEAHQPQEPPDVLLSVHPQVTSPGPEHPE 838
Query: 195 PGLGVD 200
G G D
Sbjct: 839 GGQGCD 844
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 35.8 bits (81), Expect = 0.058
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 88 PGASLKRKDPKDHEKENLRRIREIQKRFREQERSREQGQPRPLKALWRSPKYDKVESRVK 147
P K K PK EK++ + R+ +K+ +E+E+ + P+P K R K ++ + + K
Sbjct: 835 PMVEKKSKKPKKKEKKHKEKERDKEKK-KEKEKKKS---PKPKKKKHRKEKEERTKGKKK 890
Query: 148 AQLQEPG 154
++ Q PG
Sbjct: 891 SKKQPPG 897
>gi|21450721 enkurin [Homo sapiens]
Length = 256
Score = 35.8 bits (81), Expect = 0.058
Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 11/225 (4%)
Query: 127 PRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPT 186
PR + + K D +++ + P FL+ HS+ P + P
Sbjct: 25 PRYISIFKATVKDDMQKAKTAMKTMGPAKVEVPSPKDFLKKHSKEKTLPPKKNFDRNVPK 84
Query: 187 PPGPEAK--EPGLGV----DFIRHNARAAKRAPRRHSCSLQVLAQV-----LEQQRQAQE 235
P K P +G+ +FI NA + + V + LE +
Sbjct: 85 KPAVPLKTDHPVMGIQSGKNFINTNAADIIMGVAKKPKPIYVDKRTGDKHDLEPSGLVPK 144
Query: 236 HYNATQKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQ 295
+ N G P Y+ +R + ++ E + + R+ + +R L L ++
Sbjct: 145 YINKKDYGVTPEYICKRNEEIKKAQEDYDRYIQENLKKAAMKRLSDEEREAVLQGLKKNW 204
Query: 296 SQLLRELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKV 340
++ +E L DS+ + + L+ ++ Q+E I I + K+
Sbjct: 205 EEVHKEFQSLSVFIDSIPKKIRKQRLEEEMKQLEHDIGIIEKHKI 249
>gi|125628665 hypothetical protein LOC388284 [Homo sapiens]
Length = 317
Score = 35.8 bits (81), Expect = 0.058
Identities = 60/262 (22%), Positives = 100/262 (38%), Gaps = 62/262 (23%)
Query: 112 QKRFREQERSREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRC 171
++R + + E+ PRP+ ++ R P++ VK+ L PG LRAH +
Sbjct: 77 EERPKPHAGALEERGPRPVVSIVR-PRHGPKRKPVKS-LSLPG----------LRAHLKA 124
Query: 172 GPGLPP--------PHVSSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVL 223
LPP P S +P+P + K+ R + AP H+ + V
Sbjct: 125 EAELPPKLPLQEEEPEDSQSEPSPSAKQHKKA---------KKRKSLGAPVLHAVASMVS 175
Query: 224 A--QVLEQQRQAQEHYNATQKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPE 281
A + L +R+AQ Q + + L + EAE +++ P +PE
Sbjct: 176 APLETLRLERKAQRLRPLYQYVNYCNPELNQAGKGDGEAEVEAEAELAP--------VPE 227
Query: 282 NQRLETLTKLLQSQSQLLRELVLL----------------------PAGADSLRAQSHRA 319
+E L LL +L L L P G SL H+A
Sbjct: 228 EGGVEQLQALLPLAGELGPGLALPCPSPLVTPTHALAPLGEEAGEEPGGLPSLGVSDHKA 287
Query: 320 ELDRKL-VQVEEAIKIFSRPKV 340
E+D+ V +++ + + + P V
Sbjct: 288 EVDKSTQVDIDKMLSVCTAPLV 309
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,268,191
Number of Sequences: 37866
Number of extensions: 1034097
Number of successful extensions: 9372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 8219
Number of HSP's gapped (non-prelim): 1357
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.