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Search of human proteins with 14149718
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14149718 akirin 2 [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14149718 akirin 2 [Homo sapiens] 403 e-113
gi|13375791 akirin 1 isoform 1 [Homo sapiens] 211 3e-55
gi|210147487 akirin 1 isoform 2 [Homo sapiens] 124 7e-29
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 34 0.097
gi|24497513 homeobox A3 isoform a [Homo sapiens] 33 0.13
gi|13562112 homeobox A3 isoform a [Homo sapiens] 33 0.13
gi|239752280 PREDICTED: similar to family with sequence similari... 33 0.13
gi|210032463 family with sequence similarity 48, member B2 [Homo... 33 0.13
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens] 33 0.17
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens] 33 0.17
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 33 0.22
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 32 0.28
gi|24497554 homeobox A13 [Homo sapiens] 32 0.37
gi|157364934 fibrosin [Homo sapiens] 32 0.37
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 32 0.48
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 32 0.48
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens] 32 0.48
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens] 32 0.48
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 31 0.63
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|157785645 SPEG complex locus [Homo sapiens] 31 0.63
gi|22538470 eomesodermin [Homo sapiens] 31 0.83
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 31 0.83
gi|113412136 PREDICTED: hypothetical protein [Homo sapiens] 31 0.83
gi|113408483 PREDICTED: hypothetical protein [Homo sapiens] 31 0.83
gi|4557595 forkhead box F2 [Homo sapiens] 31 0.83
gi|58761508 midnolin [Homo sapiens] 31 0.83
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 30 1.1
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 30 1.1
>gi|14149718 akirin 2 [Homo sapiens]
Length = 203
Score = 403 bits (1036), Expect = e-113
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK 60
MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK
Sbjct: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK 60
Query: 61 YLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL 120
YLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL
Sbjct: 61 YLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL 120
Query: 121 SGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYD 180
SGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYD
Sbjct: 121 SGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYD 180
Query: 181 AFVKFTHDQIMRRYGEQPASYVS 203
AFVKFTHDQIMRRYGEQPASYVS
Sbjct: 181 AFVKFTHDQIMRRYGEQPASYVS 203
>gi|13375791 akirin 1 isoform 1 [Homo sapiens]
Length = 192
Score = 211 bits (538), Expect = 3e-55
Identities = 117/204 (57%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 1 MACGATLKRTLDFDP-LLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQ 59
MACGATLKR ++F+ LLSP SPKRRRCAPL PT P A F +P
Sbjct: 1 MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPP---DAEPPPPFQTQ--TPP 55
Query: 60 KYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFL 119
+ L+ +P+P G T EQI NIKQEY R Q+ RHLE Q++ C S++QPH+
Sbjct: 56 QSLQ-QPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSE-ACASESQPHSSA 113
Query: 120 LSGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQY 179
L+ P+SPG SS +KK+QP FTLRQVG+ICERLLK+ E+K+REEYE+ILNTKLAEQY
Sbjct: 114 LTAPSSPG-----SSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQY 168
Query: 180 DAFVKFTHDQIMRRYGEQPASYVS 203
++FVKFTHDQIMRRYG +P SYVS
Sbjct: 169 ESFVKFTHDQIMRRYGTRPTSYVS 192
>gi|210147487 akirin 1 isoform 2 [Homo sapiens]
Length = 147
Score = 124 bits (310), Expect = 7e-29
Identities = 82/204 (40%), Positives = 101/204 (49%), Gaps = 58/204 (28%)
Query: 1 MACGATLKRTLDFDP-LLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQ 59
MACGATLKR ++F+ LLSP SPKRRRCAPL PT P A F +P
Sbjct: 1 MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPP---DAEPPPPFQTQ--TPP 55
Query: 60 KYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFL 119
+ L+ +P+P G T EQI NIKQEY R Q+ RHLE Q++ C S++QPH+
Sbjct: 56 QSLQ-QPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSE-ACASESQPHSSA 113
Query: 120 LSGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQY 179
L+ P+SP EQY
Sbjct: 114 LTAPSSP--------------------------------------------------EQY 123
Query: 180 DAFVKFTHDQIMRRYGEQPASYVS 203
++FVKFTHDQIMRRYG +P SYVS
Sbjct: 124 ESFVKFTHDQIMRRYGTRPTSYVS 147
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 33.9 bits (76), Expect = 0.097
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 22 PKRRRCAPLSAPTSAAAS-PLSAAAATAASFSAAAASPQKYLRMEPSP 68
P ++ +PL P SAAA+ +AAAA AA+ +AAAA+P L +P
Sbjct: 481 PPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAP 528
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 4 GATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLR 63
G+ LKR ++ A+ A +A +AAA+P A AA AA AAAA+P
Sbjct: 486 GSPLKRPFSAAAAIAAAAA----AAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAA 541
Query: 64 MEPSP 68
P+P
Sbjct: 542 AAPAP 546
Score = 27.3 bits (59), Expect = 9.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 16 LLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPS 67
L + A+P A + +AA +P AAA A+ AAAAS +PS
Sbjct: 522 LAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPS 573
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.5 bits (75), Expect = 0.13
Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 8/169 (4%)
Query: 2 ACGATLKRTLDFDPLLS--PASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQ 59
AC TL P L P P + AP AP +P A AA ++ASP
Sbjct: 70 ACLRTLSAPPSQPPSLGEPPLHPPPPQAAP-PAPQPPQPAPQPPAPTPAAPPPPSSASPP 128
Query: 60 KYLRMEPSPFGDVSS-RLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAF 118
+ P+P S L + + I K ++ +TS + C D P
Sbjct: 129 QNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQ 188
Query: 119 LLSGPASPGTSSAASSPLKKE----QPLFTLRQVGMICERLLKEREEKV 163
S A +SA L+KE + L R+V M L ER+ K+
Sbjct: 189 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 237
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.5 bits (75), Expect = 0.13
Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 8/169 (4%)
Query: 2 ACGATLKRTLDFDPLLS--PASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQ 59
AC TL P L P P + AP AP +P A AA ++ASP
Sbjct: 70 ACLRTLSAPPSQPPSLGEPPLHPPPPQAAP-PAPQPPQPAPQPPAPTPAAPPPPSSASPP 128
Query: 60 KYLRMEPSPFGDVSS-RLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAF 118
+ P+P S L + + I K ++ +TS + C D P
Sbjct: 129 QNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQ 188
Query: 119 LLSGPASPGTSSAASSPLKKE----QPLFTLRQVGMICERLLKEREEKV 163
S A +SA L+KE + L R+V M L ER+ K+
Sbjct: 189 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 237
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 33.5 bits (75), Expect = 0.13
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 15 PLLSP---ASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK 60
PL P A+P AP AP AAA L+AAA AA+ AA + QK
Sbjct: 450 PLKRPFPAAAPAVAAAAPAPAPAPAAAPALAAAAVAAAAGGAAPSHSQK 498
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 33.5 bits (75), Expect = 0.13
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 15 PLLSP---ASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK 60
PL P A+P AP AP AAA L+AAA AA+ AA + QK
Sbjct: 488 PLKRPFPAAAPAVAAAAPAPAPAPAAAPALAAAAVAAAAGGAAPSHSQK 536
>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
Length = 973
Score = 33.1 bits (74), Expect = 0.17
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 29 PLSAPTSAAASPLSAAAATAASFSAAAASP 58
PL+AP + A SP +AAAA AA A A+SP
Sbjct: 358 PLAAPGAPATSPFAAAAAAAALGGADASSP 387
>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
Length = 1070
Score = 33.1 bits (74), Expect = 0.17
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 29 PLSAPTSAAASPLSAAAATAASFSAAAASP 58
PL+AP + A SP +AAAA AA A A+SP
Sbjct: 358 PLAAPGAPATSPFAAAAAAAALGGADASSP 387
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 32.7 bits (73), Expect = 0.22
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 5 ATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAA--ASPLSAAAATA-------ASFSAAA 55
A L TL P + A AP+ A TSA ASPL+ +A+A AS SAAA
Sbjct: 1768 APLPATLTPVPASTSAPVPASTLAPVLASTSAPVPASPLAPVSASASVSASVPASTSAAA 1827
Query: 56 ASPQKYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQP 115
+ P+P ++S T + + TS P +S A P
Sbjct: 1828 ITSSSAPASAPAPTPILASVSTPASVTILASASIPILASAL-ASTSAPTPAPAASSPAAP 1886
Query: 116 HAFLLSGPASPGTSSAASSPL 136
+++ P P ++ AS PL
Sbjct: 1887 ---VITAPTIPASAPTASVPL 1904
Score = 31.2 bits (69), Expect = 0.63
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 18 SPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDVSSRLT 77
SPA+P ++APT A++P ++ AS SA A +P P+P ++
Sbjct: 1882 SPAAPV------ITAPTIPASAPTASVPLAPASASAPAPAPTPVSAPNPAPPAPAQTQAQ 1935
Query: 78 TEQILYNIKQEYKRMQKR 95
T + + N Q + K+
Sbjct: 1936 THKPVQNPLQTTSQSSKQ 1953
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 32.3 bits (72), Expect = 0.28
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 31 SAPTSAAASPLSAAAATAASFSAAAASP 58
S+ +SA+AS SAAAA AA+ +AAA+SP
Sbjct: 126 SSSSSASASSASAAAAAAAAAAAAASSP 153
Score = 28.1 bits (61), Expect = 5.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 PLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAA-AASPQKYLRMEPSP 68
P SP+ + SA +++AA+ +AAAA AAS A A ++ + P P
Sbjct: 116 PSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPP 170
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.37
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 17 LSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAAS 57
L+P + AP AP SAAA+ AAAA AA+ +AAAAS
Sbjct: 97 LAPGAASAYSSAPGEAPPSAAAA---AAAAAAAAAAAAAAS 134
Score = 27.7 bits (60), Expect = 7.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 33 PTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSP 68
P +AAA + AA AA+ +AAAA+ + L P+P
Sbjct: 61 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAP 96
Score = 27.3 bits (59), Expect = 9.1
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 28 APLSAPTSAAA-------SPLSAAAATAASFSAAAASPQKYLRMEPSPFG 70
APL AP +A+A +P SAAAA AA+ +AAAA+ P P G
Sbjct: 95 APL-APGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAG 143
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 17 LSPASPKRRRCAPLSAPTSA-----------AASPLSAAAATAASFSAAAASPQ----KY 61
+SPA+PK R PT AA+ +AAAA AA+ +AAA PQ +
Sbjct: 280 VSPATPKARAGEEGPRPTKESVRVKEERKEEAAAAAAAAAAAAAAAAAAATGPQGLHLLF 339
Query: 62 LRMEPSPF 69
R P PF
Sbjct: 340 ERPRPPPF 347
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 31.6 bits (70), Expect = 0.48
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 19 PASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDVSSRLTT 78
P ++ P + P P S AA AA A + +R + R T
Sbjct: 263 PGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVK-ESSIRSVQETVLPIKKRKTR 321
Query: 79 EQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLLSGPASP-GTSSAASSPLK 137
E + +K+ K + E S + C + + S +SP G SS+ASSP K
Sbjct: 322 ETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRK------SKESSPKGRSSSASSPPK 375
Query: 138 KE 139
KE
Sbjct: 376 KE 377
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 31.6 bits (70), Expect = 0.48
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 19 PASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDVSSRLTT 78
P ++ P + P P S AA AA A + +R + R T
Sbjct: 251 PGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVK-ESSIRSVQETVLPIKKRKTR 309
Query: 79 EQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLLSGPASP-GTSSAASSPLK 137
E + +K+ K + E S + C + + S +SP G SS+ASSP K
Sbjct: 310 ETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRK------SKESSPKGRSSSASSPPK 363
Query: 138 KE 139
KE
Sbjct: 364 KE 365
>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
Length = 485
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 19 PASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAAS 57
P+S R A L+A T+AAA+ SAAAATAA +A AA+
Sbjct: 34 PSSDDSPRSA-LAAATAAAAAAASAAAATAAFTTAKAAA 71
>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
Length = 501
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 19 PASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAAS 57
P+S R A L+A T+AAA+ SAAAATAA +A AA+
Sbjct: 34 PSSDDSPRSA-LAAATAAAAAAASAAAATAAFTTAKAAA 71
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 31.2 bits (69), Expect = 0.63
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 18 SPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAAS 57
+P SP A +A +S A P AAAA+AAS S+A++S
Sbjct: 53 APPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSS 92
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 31.2 bits (69), Expect = 0.63
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 8 KRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAA--ATAASFSAAAASPQ-KYLRM 64
KR L F PL SPA+ A SAP++ ++S S+A+ A+ A +A ASP R
Sbjct: 177 KRRL-FTPL-SPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSART 234
Query: 65 EPSPFGDVSSR 75
+P P G + R
Sbjct: 235 QPPPAGSRTGR 245
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 31.2 bits (69), Expect = 0.63
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 8 KRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAA--ATAASFSAAAASPQ-KYLRM 64
KR L F PL SPA+ A SAP++ ++S S+A+ A+ A +A ASP R
Sbjct: 177 KRRL-FTPL-SPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSART 234
Query: 65 EPSPFGDVSSR 75
+P P G + R
Sbjct: 235 QPPPAGSRTGR 245
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 31.2 bits (69), Expect = 0.63
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 18 SPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDVSSRLT 77
+P + + R P +PTS A PL+ AA T S + + +SP P +SS
Sbjct: 2785 APVTSRPARARPPDSPTSLAP-PLAPAAPTPPSVTVSPSSP------PTPPSQALSSLKA 2837
Query: 78 TEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL-SGPASPGTSSAASSPL 136
+ ++ +Q R E + T + ++P F+L +G P ++ P+
Sbjct: 2838 VGPPPQTPPRRHRGLQAARPAEPTLPSTH---VTPSEPKPFVLDTGTPIPASTPQGVKPV 2894
Query: 137 KKEQPLFTL 145
P++ +
Sbjct: 2895 SSSTPVYVV 2903
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 30.8 bits (68), Expect = 0.83
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 19 PASPKRRRCAPLSAP----TSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFG 70
P P R+ +P +AAA+ +AAAA A +S + S ++Y P P G
Sbjct: 98 PGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSSERYYLQSPGPQG 153
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 0.83
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 15 PLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDVSS 74
PLL+ R RCAP A AS L A + + + A + L +P GD +
Sbjct: 185 PLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALT 244
Query: 75 RLTT 78
+ T
Sbjct: 245 EVRT 248
>gi|113412136 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.8 bits (68), Expect = 0.83
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 15 PLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDVSS 74
PLL+ R RCAP A AS L A + + + A + L +P GD +
Sbjct: 52 PLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALT 111
Query: 75 RLTT 78
+ T
Sbjct: 112 EVRT 115
>gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.8 bits (68), Expect = 0.83
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 15 PLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDVSS 74
PLL+ R RCAP A AS L A + + + A + L +P GD +
Sbjct: 52 PLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALT 111
Query: 75 RLTT 78
+ T
Sbjct: 112 EVRT 115
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 30.8 bits (68), Expect = 0.83
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 19 PASPKRRRCAP---------LSAPTSAAASPLSAAAATAASFSAAAAS 57
P +P RR C+P +S P +AAA+ +A T++S S+++AS
Sbjct: 8 PPAPLRRACSPVPGALQAALMSPPPAAAAAAAAAPETTSSSSSSSSAS 55
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 30.8 bits (68), Expect = 0.83
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 18 SPASPKRRRCAPLSA-----PTSAAASPLSAAAATAASFSAAAASPQKYLRMEPSPFGDV 72
S ASP C P+S+ P + SP S + TA SF + AAS +M+ SP
Sbjct: 183 SIASPVSSPCRPVSSAARVPPVPTSPSPASPSPITAGSFRSHAASTTCPEQMDCSPTASS 242
Query: 73 SS 74
S+
Sbjct: 243 SA 244
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 4 GATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLR 63
GA +D P+ P + A ++ PT +A+P +A +AT+ + ++
Sbjct: 406 GAPSPPAVDLSPVSEPEEQAKEVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEE 465
Query: 64 MEPSPFGDVSSRLTTEQIL 82
E G+ S E++L
Sbjct: 466 GEAGEAGEAESEKGGEELL 484
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 4 GATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQKYLR 63
GA +D P+ P + A ++ PT +A+P +A +AT+ + ++
Sbjct: 319 GAPSPPAVDLSPVSEPEEQAKEVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEE 378
Query: 64 MEPSPFGDVSSRLTTEQIL 82
E G+ S E++L
Sbjct: 379 GEAGEAGEAESEKGGEELL 397
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.126 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,133,758
Number of Sequences: 37866
Number of extensions: 367793
Number of successful extensions: 4396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 3722
Number of HSP's gapped (non-prelim): 631
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.