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Search of human proteins with 8922913
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922913 hypothetical protein LOC55317 [Homo sapiens]
(200 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922913 hypothetical protein LOC55317 [Homo sapiens] 400 e-112
gi|20357552 cortactin isoform a [Homo sapiens] 35 0.056
gi|20357556 cortactin isoform b [Homo sapiens] 35 0.056
gi|134244281 melanoma-associated antigen p97 isoform 1 precursor... 31 0.80
gi|22907049 aldehyde dehydrogenase 3A1 [Homo sapiens] 31 0.80
gi|206597441 aldehyde dehydrogenase 3A1 [Homo sapiens] 31 0.80
gi|206597439 aldehyde dehydrogenase 3A1 [Homo sapiens] 31 0.80
gi|149999352 forkhead box P2 isoform II [Homo sapiens] 30 1.8
gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ... 30 1.8
gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ... 30 1.8
gi|224586880 Ras protein-specific guanine nucleotide-releasing f... 28 6.8
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa... 28 6.8
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 27 8.9
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 27 8.9
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 27 8.9
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 27 8.9
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 27 8.9
>gi|8922913 hypothetical protein LOC55317 [Homo sapiens]
Length = 200
Score = 400 bits (1029), Expect = e-112
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MVHAFLIHTLRAPNTEDTGLCRVLYSCVFGAEKSPDDPRPHGAERDRLLRKEQILAVARQ 60
MVHAFLIHTLRAPNTEDTGLCRVLYSCVFGAEKSPDDPRPHGAERDRLLRKEQILAVARQ
Sbjct: 1 MVHAFLIHTLRAPNTEDTGLCRVLYSCVFGAEKSPDDPRPHGAERDRLLRKEQILAVARQ 60
Query: 61 VESMCRLQQQASGRPPMDLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRTVVWLGVLSL 120
VESMCRLQQQASGRPPMDLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRTVVWLGVLSL
Sbjct: 61 VESMCRLQQQASGRPPMDLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRTVVWLGVLSL 120
Query: 121 GFALVLDAHENLLLAEGTLRLLTRLLLDHLRLLAPSTSLLLRADRIEGILTRFLPHGQLL 180
GFALVLDAHENLLLAEGTLRLLTRLLLDHLRLLAPSTSLLLRADRIEGILTRFLPHGQLL
Sbjct: 121 GFALVLDAHENLLLAEGTLRLLTRLLLDHLRLLAPSTSLLLRADRIEGILTRFLPHGQLL 180
Query: 181 FLNDQFVQGLEKEFSAAWPR 200
FLNDQFVQGLEKEFSAAWPR
Sbjct: 181 FLNDQFVQGLEKEFSAAWPR 200
>gi|20357552 cortactin isoform a [Homo sapiens]
Length = 550
Score = 34.7 bits (78), Expect = 0.056
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 32 EKSPDDPRPHGAERDRLLRKEQILAVARQVESMCRLQQQASGR---PPMDLQPQSSDEQV 88
EK +D R AER + + KE+ Q E+ +L++QA + PP+ PQ ++E++
Sbjct: 360 EKEQEDRRKAEAERAQRMAKER----QEQEEARRKLEEQARAKTQTPPVSPAPQPTEERL 415
Query: 89 PLHEAPRGAFRLAAENPFQEP 109
P A AE ++ P
Sbjct: 416 PSSPVYEDAASFKAELSYRGP 436
>gi|20357556 cortactin isoform b [Homo sapiens]
Length = 513
Score = 34.7 bits (78), Expect = 0.056
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 32 EKSPDDPRPHGAERDRLLRKEQILAVARQVESMCRLQQQASGR---PPMDLQPQSSDEQV 88
EK +D R AER + + KE+ Q E+ +L++QA + PP+ PQ ++E++
Sbjct: 323 EKEQEDRRKAEAERAQRMAKER----QEQEEARRKLEEQARAKTQTPPVSPAPQPTEERL 378
Query: 89 PLHEAPRGAFRLAAENPFQEP 109
P A AE ++ P
Sbjct: 379 PSSPVYEDAASFKAELSYRGP 399
>gi|134244281 melanoma-associated antigen p97 isoform 1 precursor
[Homo sapiens]
Length = 738
Score = 30.8 bits (68), Expect = 0.80
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 62 ESMCRL-QQQASGRPPMDLQPQSSDEQVPLHEAPRGAFRLAAENP----FQEPRTVV--- 113
ES+CRL + +SG D P + + GAFR AE F + TV+
Sbjct: 183 ESLCRLCRGDSSGEGVCDKSP------LERYYDYSGAFRCLAEGAGDVAFVKHSTVLENT 236
Query: 114 -WLGVLSLGFALVLDAHENLLLAEGTLRLLTRLLLDHLRLLAPSTSLLLRADRIEGILTR 172
+ S G AL+ E LL +G+ +T HL + P+ ++++RAD G++ R
Sbjct: 237 DGKTLPSWGQALLSQDFE-LLCRDGSRADVTEWRQCHLARV-PAHAVVVRADTDGGLIFR 294
Query: 173 FLPHGQLLFLND 184
L GQ LF ++
Sbjct: 295 LLNEGQRLFSHE 306
>gi|22907049 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 30.8 bits (68), Expect = 0.80
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 52 EQILAVARQVESMCRLQQQASGRPPMDLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRT 111
E+++ V ++E M + + + P++ PQ+ +++ +H P G + + T
Sbjct: 62 EEVVYVLEEIEYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNLT 121
Query: 112 V-VWLGVLSLGFALVLDAHENLLLAEGTLRLLTRLLLDHL 150
+ +G ++ G ++VL E L+E LL ++ +L
Sbjct: 122 IQPMVGAIAAGNSVVLKPSE---LSENMASLLATIIPQYL 158
>gi|206597441 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 30.8 bits (68), Expect = 0.80
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 52 EQILAVARQVESMCRLQQQASGRPPMDLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRT 111
E+++ V ++E M + + + P++ PQ+ +++ +H P G + + T
Sbjct: 62 EEVVYVLEEIEYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNLT 121
Query: 112 V-VWLGVLSLGFALVLDAHENLLLAEGTLRLLTRLLLDHL 150
+ +G ++ G ++VL E L+E LL ++ +L
Sbjct: 122 IQPMVGAIAAGNSVVLKPSE---LSENMASLLATIIPQYL 158
>gi|206597439 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 30.8 bits (68), Expect = 0.80
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 52 EQILAVARQVESMCRLQQQASGRPPMDLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRT 111
E+++ V ++E M + + + P++ PQ+ +++ +H P G + + T
Sbjct: 62 EEVVYVLEEIEYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNLT 121
Query: 112 V-VWLGVLSLGFALVLDAHENLLLAEGTLRLLTRLLLDHL 150
+ +G ++ G ++VL E L+E LL ++ +L
Sbjct: 122 IQPMVGAIAAGNSVVLKPSE---LSENMASLLATIIPQYL 158
>gi|149999352 forkhead box P2 isoform II [Homo sapiens]
Length = 740
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 49 LRKEQILAVARQVESMCRLQQQASGRPPMDLQPQSSDEQVPLHE 92
L+++Q L ARQ+ LQQQ SG P+SSD+Q PL E
Sbjct: 52 LQQQQALQAARQL----LLQQQTSGLK----SPKSSDKQRPLQE 87
>gi|40254823 SH2 containing inositol phosphatase isoform b [Homo
sapiens]
Length = 1188
Score = 29.6 bits (65), Expect = 1.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 44 ERDRLLRKEQILAVARQVESMCRLQQQASGRPPMDLQP 81
E++++LRKE + A +++ E C+L QQ + +P
Sbjct: 363 EKEKILRKEYVFADSKKREGFCQLLQQMKNKHSEQPEP 400
>gi|64085167 SH2 containing inositol phosphatase isoform a [Homo
sapiens]
Length = 1189
Score = 29.6 bits (65), Expect = 1.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 44 ERDRLLRKEQILAVARQVESMCRLQQQASGRPPMDLQP 81
E++++LRKE + A +++ E C+L QQ + +P
Sbjct: 364 EKEKILRKEYVFADSKKREGFCQLLQQMKNKHSEQPEP 401
>gi|224586880 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 3 [Homo sapiens]
Length = 1257
Score = 27.7 bits (60), Expect = 6.8
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 139 LRLLTRLLLDHLRLLAPSTSLLLRADRIEGILTRFLPHGQLLFLNDQFVQGLEKEFSAAW 198
L +L L LR+ A S + D + I FL ++FL+ F QGL+ S +W
Sbjct: 259 LHILVNNFLRPLRMAASSKKPPITHDDVSSI---FLNSETIMFLHQIFYQGLKARIS-SW 314
Query: 199 P 199
P
Sbjct: 315 P 315
>gi|24797099 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 1 [Homo sapiens]
Length = 1273
Score = 27.7 bits (60), Expect = 6.8
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 139 LRLLTRLLLDHLRLLAPSTSLLLRADRIEGILTRFLPHGQLLFLNDQFVQGLEKEFSAAW 198
L +L L LR+ A S + D + I FL ++FL+ F QGL+ S +W
Sbjct: 259 LHILVNNFLRPLRMAASSKKPPITHDDVSSI---FLNSETIMFLHQIFYQGLKARIS-SW 314
Query: 199 P 199
P
Sbjct: 315 P 315
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 27.3 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 50 RKEQILAVARQVESMCRLQQQASGRPPMDLQPQSSDEQVPLHEA 93
+K+QIL + ++V R QQ+ R +LQ + +E L+EA
Sbjct: 315 QKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEA 358
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 27.3 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 50 RKEQILAVARQVESMCRLQQQASGRPPMDLQPQSSDEQVPLHEA 93
+K+QIL + ++V R QQ+ R +LQ + +E L+EA
Sbjct: 435 QKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEA 478
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 27.3 bits (59), Expect = 8.9
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 24 LYSCVFGA------EKSPDDPRPHGAERDRLLRKEQILAVARQVESMCRLQQQASGRPPM 77
L C+ G+ K DD + G ++ ++ E + A + S+ + + +P
Sbjct: 537 LLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIAEENKAKADQPKD 596
Query: 78 DLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRTVVWLGVL---SLGFAL 124
D + +D Q + G LA E P + +WL +L +L FAL
Sbjct: 597 DTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDFAL 646
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 27.3 bits (59), Expect = 8.9
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 24 LYSCVFGA------EKSPDDPRPHGAERDRLLRKEQILAVARQVESMCRLQQQASGRPPM 77
L C+ G+ K DD + G ++ ++ E + A + S+ + + +P
Sbjct: 537 LLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIAEENKAKADQPKD 596
Query: 78 DLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRTVVWLGVL---SLGFAL 124
D + +D Q + G LA E P + +WL +L +L FAL
Sbjct: 597 DTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDFAL 646
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 27.3 bits (59), Expect = 8.9
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 24 LYSCVFGA------EKSPDDPRPHGAERDRLLRKEQILAVARQVESMCRLQQQASGRPPM 77
L C+ G+ K DD + G ++ ++ E + A + S+ + + +P
Sbjct: 537 LLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIAEENKAKADQPKD 596
Query: 78 DLQPQSSDEQVPLHEAPRGAFRLAAENPFQEPRTVVWLGVL---SLGFAL 124
D + +D Q + G LA E P + +WL +L +L FAL
Sbjct: 597 DTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDFAL 646
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,105,246
Number of Sequences: 37866
Number of extensions: 363208
Number of successful extensions: 951
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 18
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.