Guide to the Human Genome
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Name: C20orf29 Sequence: fasta or formatted (200aa) NCBI GI: 8922913
Description:

hypothetical protein LOC55317

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         18           2
 C cysteine            1.5          3           1
 D aspartate           5.0         10           2
 E glutamate           7.0         14           1
 F phenylalanine       4.5          9           1
 G glycine             5.5         11           1
 H histidine           3.5          7           1
 I isoleucine          2.0          4           1
 K lysine              1.5          3           1
 L leucine            18.5         37           3
 M methionine          1.5          3           1
 N asparagine          2.0          4           1
 P proline             7.0         14           2
 Q glutamine           6.0         12           3
 R arginine            9.5         19           1
 S serine              5.0         10           2
 T threonine           4.0          8           1
 V valine              5.5         11           2
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55317 
CTTN                  0.027   cortactin isoform a 
CTTN                  0.027   cortactin isoform b 
MFI2                  0.016   melanoma-associated antigen p97 isoform 1 precursor...
ALDH3A1               0.016   aldehyde dehydrogenase 3A1 
ALDH3A1               0.016   aldehyde dehydrogenase 3A1 
ALDH3A1               0.016   aldehyde dehydrogenase 3A1 
FOXP2                 0.013   forkhead box P2 isoform II 
INPP5D                0.013   SH2 containing inositol phosphatase isoform b 
INPP5D                0.013   SH2 containing inositol phosphatase isoform a 
RASGRF1               0.008   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.008   Ras protein-specific guanine nucleotide-releasing fa...
FAM184A               0.005   hypothetical protein LOC79632 isoform 2 
FAM184A               0.005   hypothetical protein LOC79632 isoform 1 
ZCCHC11               0.005   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.005   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.005   zinc finger, CCHC domain containing 11 isoform c [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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