Guide to the Human Genome
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Name: FAM176B Sequence: fasta or formatted (165aa) NCBI GI: 8922567
Description:

hypothetical protein LOC55194

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         11           2
 C cysteine            1.2          2           1
 D aspartate           7.3         12           3
 E glutamate           9.7         16           2
 F phenylalanine       2.4          4           1
 G glycine             7.9         13           1
 H histidine           1.2          2           1
 I isoleucine          3.0          5           1
 K lysine              0.0          0           0
 L leucine            13.9         23           3
 M methionine          1.8          3           1
 N asparagine          2.4          4           1
 P proline             9.7         16           1
 Q glutamine           1.8          3           1
 R arginine           10.3         17           2
 S serine              6.1         10           2
 T threonine           7.3         12           1
 V valine              3.6          6           1
 W tryptophan          1.2          2           1
 Y tyrosine            2.4          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55194 
FAM176A               0.306   family with sequence similarity 176, member A 
FAM176A               0.306   family with sequence similarity 176, member A [Homo...
C21orf63              0.188   hypothetical protein LOC59271 
HIVEP3                0.038   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.038   human immunodeficiency virus type I enhancer bindin...
PPP1R15A              0.029   protein phosphatase 1, regulatory subunit 15A [Homo...
RTN4                  0.025   reticulon 4 isoform B 
RTN4                  0.025   reticulon 4 isoform D 
RTN4                  0.025   reticulon 4 isoform A 
NLGN2                 0.025   neuroligin 2 
HDGF2                 0.025   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.025   hepatoma-derived growth factor-related protein 2 iso...
SENP3                 0.022   SUMO1/sentrin/SMT3 specific protease 3 
HSF4                  0.022   heat shock transcription factor 4 isoform b 
HSF4                  0.022   heat shock transcription factor 4 isoform a 
NACAD                 0.022   NAC alpha domain containing 
NACAD                 0.022   PREDICTED: NAC alpha domain containing 
NACAD                 0.022   PREDICTED: NAC alpha domain containing 
NACAD                 0.022   PREDICTED: NAC alpha domain containing 
NACAD                 0.022   PREDICTED: NAC alpha domain containing 
FGFR1                 0.022   fibroblast growth factor receptor 1 isoform 6 precur...
FGFR1                 0.022   fibroblast growth factor receptor 1 isoform 4 precur...
KIAA1429              0.022   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.022   hypothetical protein LOC25962 isoform 2 
PRKCSH                0.019   protein kinase C substrate 80K-H isoform 1 
AKT1S1                0.019   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.019   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.019   AKT1 substrate 1 (proline-rich) 
IL28RA                0.019   interleukin 28 receptor, alpha isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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