Search of human proteins with 8922549

Search of human proteins with 8922549

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8922549 anti-silencing function 1B [Homo sapiens]
         (202 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8922549 anti-silencing function 1B [Homo sapiens]                  420   e-118
gi|7661592 ASF1 anti-silencing function 1 homolog A [Homo sapiens]    293   5e-80
gi|23397663 alpha/beta hydrolase domain containing protein 3 [Ho...    29   2.4  
gi|4502735 cyclin-dependent kinase 4 [Homo sapiens]                    29   3.1  
gi|126131104 fibrocystin isoform 2 [Homo sapiens]                      29   3.1  
gi|126131102 fibrocystin isoform 1 [Homo sapiens]                      29   3.1  
gi|94538354 mitochondrial processing peptidase beta subunit prec...    28   4.1  
gi|8923842 forkhead box J2 [Homo sapiens]                              28   4.1  
gi|193788560 cerebral endothelial cell adhesion molecule 1 [Homo...    28   5.3  
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso...    28   6.9  
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso...    28   6.9  

>gi|8922549 anti-silencing function 1B [Homo sapiens]
          Length = 202

 Score =  420 bits (1080), Expect = e-118
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV 60
           MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV
Sbjct: 1   MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV 60

Query: 61  LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP 120
           LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP
Sbjct: 61  LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP 120

Query: 121 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP 180
           ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP
Sbjct: 121 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP 180

Query: 181 IKGLGLPGCIPGLLPENSMDCI 202
           IKGLGLPGCIPGLLPENSMDCI
Sbjct: 181 IKGLGLPGCIPGLLPENSMDCI 202


>gi|7661592 ASF1 anti-silencing function 1 homolog A [Homo sapiens]
          Length = 204

 Score =  293 bits (751), Expect = 5e-80
 Identities = 144/204 (70%), Positives = 168/204 (82%), Gaps = 2/204 (0%)

Query: 1   MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV 60
           MAKV V NV VL+NPSPF++PF+FEI+FEC E L++DLEWKIIYVGSAESEE+DQ+LDSV
Sbjct: 1   MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 60

Query: 61  LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP 120
           LVGPVPAGRHMFVFQADAPNP LIP+ DAVGVTVVLITCTY GQEFIRVGYYVNNEY   
Sbjct: 61  LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 120

Query: 121 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP 180
           ELRENPP+KPDFS+LQRNILASNPRVTRFHINW++N ++LE  E+ +P+L   L  +  P
Sbjct: 121 ELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALP 180

Query: 181 --IKGLGLPGCIPGLLPENSMDCI 202
              KG         ++ E+ MDC+
Sbjct: 181 SASKGWSTSENSLNVMLESHMDCM 204


>gi|23397663 alpha/beta hydrolase domain containing protein 3 [Homo
           sapiens]
          Length = 409

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 10/51 (19%)

Query: 27  SFECSEALADDLEWKIIYVGSAESEEFDQILDSVLVGPVPAGRHMFVFQAD 77
           +F CSE+L   L W +          F+  L + L   V   RHMFV Q D
Sbjct: 251 TFACSESLEKPLNWLL----------FNYYLTTCLQSSVNKHRHMFVKQVD 291


>gi|4502735 cyclin-dependent kinase 4 [Homo sapiens]
          Length = 303

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 41  KIIYVGSAESEEFDQILDSVLVGP-------VPAGRHMFVFQADAPNPSLIPETDAVGVT 93
           K ++ G++E+++  +I D + + P       V   R  F  +   P  S++PE +  G  
Sbjct: 211 KPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQ 270

Query: 94  VVLITCTYHGQEFIRVGYYVNNEYLNPE 121
           ++L   T++  + I     + + YL+ +
Sbjct: 271 LLLEMLTFNPHKRISAFRALQHSYLHKD 298


>gi|126131104 fibrocystin isoform 2 [Homo sapiens]
          Length = 3396

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 85  PETDAVGVTVVLITCTYHG---QEFIRVGYYVNNEYLNPE-----LRENPPMKPDFSQLQ 136
           P+ + +G  +  +   +HG      +R+G  ++N +LNP+     LRE   ++    +L 
Sbjct: 442 PKLELLGGAMYYLEAEHHGIAPSRGMRIGVQIHNTWLNPDVVTTYLREKHQIRVRAQRLP 501

Query: 137 RNILASNPRVTRFHINWDN 155
              + +      F + WDN
Sbjct: 502 EVQVLNVSGRGNFFLTWDN 520


>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
          Length = 4074

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 85  PETDAVGVTVVLITCTYHG---QEFIRVGYYVNNEYLNPE-----LRENPPMKPDFSQLQ 136
           P+ + +G  +  +   +HG      +R+G  ++N +LNP+     LRE   ++    +L 
Sbjct: 442 PKLELLGGAMYYLEAEHHGIAPSRGMRIGVQIHNTWLNPDVVTTYLREKHQIRVRAQRLP 501

Query: 137 RNILASNPRVTRFHINWDN 155
              + +      F + WDN
Sbjct: 502 EVQVLNVSGRGNFFLTWDN 520


>gi|94538354 mitochondrial processing peptidase beta subunit
           precursor [Homo sapiens]
          Length = 489

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 14/74 (18%)

Query: 68  GRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNPELRENPP 127
           GR M  +    P P L    DAV    +   CT           Y+ N   +P +    P
Sbjct: 423 GRQMLCYNRRIPIPELEARIDAVNAETIREVCT----------KYIYNR--SPAIAAVGP 470

Query: 128 MK--PDFSQLQRNI 139
           +K  PDF Q++ N+
Sbjct: 471 IKQLPDFKQIRSNM 484


>gi|8923842 forkhead box J2 [Homo sapiens]
          Length = 574

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 13  ENPSPFHSPFRFEISFECSEALADDLEWKI--IYVGSAE-SEEFDQILDSVLVGPVPAGR 69
           E P P ++    +  F  SE    DL W    +Y    E S    Q   S L+G +P   
Sbjct: 227 EGPPPLYNT-NHDFKFSYSEINFQDLSWSFRNLYKSMLEKSSSSSQHGFSSLLGDIPPSN 285

Query: 70  HMFVFQADAPNP 81
           + +++Q   P P
Sbjct: 286 NYYMYQQQQPPP 297


>gi|193788560 cerebral endothelial cell adhesion molecule 1 [Homo
           sapiens]
          Length = 595

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 9   VAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSVLVGPVPAG 68
           V V E+   F S FR  +     +  A+ L W +IY+G  +     +     L G V AG
Sbjct: 410 VLVFEDDVRFESNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKETAVEGLPGLVVAG 469


>gi|55956904 mitogen-activated protein kinase kinase kinase 4
           isoform a [Homo sapiens]
          Length = 1608

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)

Query: 142 SNPRVTRFHINWDNNMD---------RLEAIETQDPSLGCGLP 175
           S+PRV       DN+ D         +LE +E++D SLG G P
Sbjct: 467 SDPRVPEIRQPIDNSFDIQSRDCISKKLERLESEDDSLGWGAP 509


>gi|55956902 mitogen-activated protein kinase kinase kinase 4
           isoform b [Homo sapiens]
          Length = 1558

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)

Query: 142 SNPRVTRFHINWDNNMD---------RLEAIETQDPSLGCGLP 175
           S+PRV       DN+ D         +LE +E++D SLG G P
Sbjct: 467 SDPRVPEIRQPIDNSFDIQSRDCISKKLERLESEDDSLGWGAP 509


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,910,944
Number of Sequences: 37866
Number of extensions: 409630
Number of successful extensions: 866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 11
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.