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Search of human proteins with 89060983
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... 403 e-113
gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 403 e-113
gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 403 e-113
gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo... 332 2e-91
gi|157384994 hypothetical protein LOC136157 [Homo sapiens] 268 2e-72
gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens] 33 0.15
gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens] 33 0.15
gi|197927203 ADP-ribosylation factor related protein 1 isoform b... 29 2.2
gi|4507449 ADP-ribosylation factor related protein 1 isoform a [... 29 2.2
gi|4504851 potassium channel, subfamily K, member 5 [Homo sapiens] 29 2.2
gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo ... 28 3.7
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor... 28 6.4
gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor... 28 6.4
gi|55770834 centromere protein F [Homo sapiens] 27 8.4
>gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 403 bits (1036), Expect = e-113
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 KKRGQAFLHTVCFY 194
KKRGQAFLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 403 bits (1036), Expect = e-113
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 KKRGQAFLHTVCFY 194
KKRGQAFLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 403 bits (1036), Expect = e-113
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 KKRGQAFLHTVCFY 194
KKRGQAFLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo
sapiens]
Length = 194
Score = 332 bits (850), Expect = 2e-91
Identities = 152/194 (78%), Positives = 177/194 (91%)
Query: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
M SPLRVAVVC +NQN+SMEAH +L+KRGFSV+SFG HVKLPGPAP+KPN+YDFKTT
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
Query: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
YD+MYNDL+ KD+E YTQNG+L+MLDRNKRIK RPERFQ+CKD+FDLI+TCEE +YDQVV
Sbjct: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
Query: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
EDLNSREQETC+PVHVVN+DIQDN E+A +GAFLICELCQCIQ +EDMENEID+LLQ+ E
Sbjct: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
Query: 181 KKRGQAFLHTVCFY 194
+K G+ FLHTVCFY
Sbjct: 181 EKSGRTFLHTVCFY 194
>gi|157384994 hypothetical protein LOC136157 [Homo sapiens]
Length = 194
Score = 268 bits (686), Expect = 2e-72
Identities = 123/194 (63%), Positives = 158/194 (81%)
Query: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
M SPLRVAVVC +N N+SMEAH +L ++G SV+SFG HV+LPG PN P +YDF TT
Sbjct: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
Query: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Y EMYNDL+ KD E YT NG+L++L RN+RIK PERFQ+C + FD+I TCEE +YD VV
Sbjct: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Query: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
EDL SREQ+T +PVHV+NMDI+D E AI+GAFLICE+CQC+Q+S+DME+ +++LL ++E
Sbjct: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
Query: 181 KKRGQAFLHTVCFY 194
+K G++FLHTVCFY
Sbjct: 181 EKAGKSFLHTVCFY 194
>gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens]
Length = 458
Score = 33.1 bits (74), Expect = 0.15
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 175 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 234
Query: 178 KL 179
L
Sbjct: 235 DL 236
>gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens]
Length = 469
Score = 33.1 bits (74), Expect = 0.15
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 186 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 245
Query: 178 KL 179
L
Sbjct: 246 DL 247
>gi|197927203 ADP-ribosylation factor related protein 1 isoform b
[Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 73 EEFYTQ-NGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVVEDLNSREQETC 131
+++Y + +GV+Y++D ER + K F+ ++T E V+ N ++ ETC
Sbjct: 87 DKYYAECHGVIYVIDSTDE-----ERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETC 141
Query: 132 RPVHVVNMDIQD 143
+ + D
Sbjct: 142 LSIPDIKTAFSD 153
>gi|4507449 ADP-ribosylation factor related protein 1 isoform a
[Homo sapiens]
Length = 201
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 73 EEFYTQ-NGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVVEDLNSREQETC 131
+++Y + +GV+Y++D ER + K F+ ++T E V+ N ++ ETC
Sbjct: 87 DKYYAECHGVIYVIDSTDE-----ERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETC 141
Query: 132 RPVHVVNMDIQD 143
+ + D
Sbjct: 142 LSIPDIKTAFSD 153
>gi|4504851 potassium channel, subfamily K, member 5 [Homo sapiens]
Length = 499
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 20 MEAHRVLNKRGFS-VQSFGITPH----VKLPGPAPNKP-NIYDFKTTYDEMYNDLI 69
+E H+ + KR +SF +PH +++ G +K NI+ F + +E YNDLI
Sbjct: 250 VEVHKAIKKRRRRRKESFESSPHSRKALQVKGSTASKDVNIFSFLSKKEETYNDLI 305
>gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo
sapiens]
Length = 324
Score = 28.5 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 25 VLNKRGFSVQSFGITPHVKLPGPAPNKP 52
+ +KR +S SF + H +LP PA +P
Sbjct: 196 IADKRYYSTMSFQTSDHTRLPPPAAGRP 223
>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 1 [Homo sapiens]
Length = 956
Score = 27.7 bits (60), Expect = 6.4
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 5 PLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTTYDEM 64
PL VC+N Q + R+++ S G+T + +L G AP PN + + TY
Sbjct: 689 PLSRLTVCFNIDGQPGDILRLVSDHRDS----GVTVNGELIG-APAPPNGHKKQRTYLRT 743
Query: 65 YNDLITKDEEFYTQ 78
LI K E Y +
Sbjct: 744 ITILINKPERSYLE 757
>gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 2 [Homo sapiens]
Length = 742
Score = 27.7 bits (60), Expect = 6.4
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 5 PLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTTYDEM 64
PL VC+N Q + R+++ S G+T + +L G AP PN + + TY
Sbjct: 475 PLSRLTVCFNIDGQPGDILRLVSDHRDS----GVTVNGELIG-APAPPNGHKKQRTYLRT 529
Query: 65 YNDLITKDEEFYTQ 78
LI K E Y +
Sbjct: 530 ITILINKPERSYLE 543
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 27.3 bits (59), Expect = 8.4
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 67 DLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVVEDLNSR 126
+LI K E F Y+ +R K I ++++ K + L+ CEE+ EDL+ +
Sbjct: 992 NLIQKSESFAN-----YIDEREKSISELSDQYKQEKLI--LLQRCEET--GNAYEDLSQK 1042
Query: 127 EQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLEKKRGQA 186
+ QE + L C L +C E+ +NE++QL + K+ Q
Sbjct: 1043 YKAA--------------QEK---NSKLECLLNECTSLCENRKNELEQLKEAFAKEH-QE 1084
Query: 187 FLHTVCF 193
FL + F
Sbjct: 1085 FLTKLAF 1091
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,617,244
Number of Sequences: 37866
Number of extensions: 330541
Number of successful extensions: 1043
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 16
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.