Search of human proteins with 89033538

Search of human proteins with 89033538

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens]          239   4e-64
gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]           239   4e-64
gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo sapi...   236   2e-63
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa...   203   2e-53
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ...   187   1e-48
gi|7657315 Lsm3 protein [Homo sapiens]                                 35   0.013
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]    28   1.2  
gi|46370057 ring finger protein 216 isoform b [Homo sapiens]           28   1.2  
gi|46358403 ring finger protein 216 isoform a [Homo sapiens]           28   1.2  
gi|7661960 Rough Deal homolog, centromere/kinetochore protein [H...    27   3.5  
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ...    27   3.5  
gi|63998898 Yeast Sps1/Ste20-related kinase 4 isoform 2 [Homo sa...    26   7.7  
gi|24429588 zinc finger protein 532 [Homo sapiens]                     26   7.7  

>gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens]
          Length = 117

 Score =  239 bits (609), Expect = 4e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH
Sbjct: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60

Query: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK
Sbjct: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117


>gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]
          Length = 117

 Score =  239 bits (609), Expect = 4e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH
Sbjct: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60

Query: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK
Sbjct: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117


>gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo
           sapiens]
          Length = 117

 Score =  236 bits (603), Expect = 2e-63
 Identities = 116/117 (99%), Positives = 116/117 (99%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNKSKSEMTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH
Sbjct: 1   MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60

Query: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK
Sbjct: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117


>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
           sapiens]
          Length = 118

 Score =  203 bits (517), Expect = 2e-53
 Identities = 105/118 (88%), Positives = 107/118 (90%), Gaps = 1/118 (0%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNK KSEMTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCR+N KLLG VKAF 
Sbjct: 1   MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60

Query: 61  RHCNMVLENVKETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 61  RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118


>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
           sapiens]
          Length = 108

 Score =  187 bits (476), Expect = 1e-48
 Identities = 96/108 (88%), Positives = 98/108 (90%), Gaps = 1/108 (0%)

Query: 11  MTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENV 70
           MTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCR+N KLLG VKAF RHCNMVLENV
Sbjct: 1   MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60

Query: 71  KETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           KE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 61  KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108


>gi|7657315 Lsm3 protein [Homo sapiens]
          Length = 102

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 18/68 (26%), Positives = 38/68 (55%)

Query: 41  QVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFL 100
           ++ +  R++ +L G + A+ +H NM+L +V+ET T +    +  +    +    I  +F+
Sbjct: 28  RIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 87

Query: 101 HGDLVIVV 108
            GD V++V
Sbjct: 88  RGDGVVLV 95


>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
          Length = 1684

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 5    NKSKSEMTPEEL-QKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHC 63
            NKS S+   E   Q+RE  E    QL +  Q  +NN Q+ ++    T    H     RH 
Sbjct: 1336 NKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVS-ELQTLQSEHDTLLERHN 1394

Query: 64   NMVLENVKE 72
             M+ E V +
Sbjct: 1395 KMLQETVSK 1403


>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
          Length = 866

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 53  LGHVKAFHRHCNMVLENVKETWTEVPK--SGKGKKSKPVNKDCYISRMFLHGDLVI 106
           L  +K  +      L +  + W E+    SGK KK K +N+  YI   F  GD+ I
Sbjct: 394 LHELKGHYAITRKALSDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKI 449


>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
          Length = 923

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 53  LGHVKAFHRHCNMVLENVKETWTEVPK--SGKGKKSKPVNKDCYISRMFLHGDLVI 106
           L  +K  +      L +  + W E+    SGK KK K +N+  YI   F  GD+ I
Sbjct: 451 LHELKGHYAITRKALSDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKI 506


>gi|7661960 Rough Deal homolog, centromere/kinetochore protein [Homo
            sapiens]
          Length = 2209

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 23/110 (20%)

Query: 13   PEELQKREEEEFNTGQLSVLTQSVK----NNTQVLINCRH-----NTKLLGHVKAFHRHC 63
            P+ + K+ EE  NTGQL+  +  ++    NN   +IN +       TK    +K    + 
Sbjct: 2101 PQVILKQLEEHMNTGQLAGFSHQIRSLILNN---IINKKEFGILAKTKYFQMLKMHAMNT 2157

Query: 64   NMVLE---------NVKETWTEVPKSGK--GKKSKPVNKDCYISRMFLHG 102
            N + E         ++ E    + +  K  GK   P    C I +MFL G
Sbjct: 2158 NNITELVNYLANDLSLDEASVLITEYSKHCGKPVPPDTAPCEILKMFLSG 2207


>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
          sapiens]
          Length = 186

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 10/54 (18%)

Query: 52 LLGHVKAF-HRHCNM---------VLENVKETWTEVPKSGKGKKSKPVNKDCYI 95
          LL +V+++  +HC           VLEN K  + E P++GK ++   +N  C I
Sbjct: 3  LLEYVQSYAEKHCKKETMCSNPKNVLENNKVIYWECPETGKAEEDATMNPCCPI 56


>gi|63998898 Yeast Sps1/Ste20-related kinase 4 isoform 2 [Homo
           sapiens]
          Length = 510

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 4   LNKSKS---EMTPEEL--QKREEEEFNTGQLSVLTQSVKNNTQVL-INCRHNTKLLGHVK 57
           LN SKS   E  P  L  Q+R+ EEF+T  +    +S+K ++  L I  R    L+ + K
Sbjct: 168 LNISKSVTREDAPHFLKEQQRKSEEFSTSHMKYSGRSIKRHSSGLRIYDREEKFLISNEK 227

Query: 58  AFHRHCNMVLENVKETWTEVPKSGKG 83
                 N +       WT+    GKG
Sbjct: 228 KIFSE-NSLKSEEPILWTKGEILGKG 252


>gi|24429588 zinc finger protein 532 [Homo sapiens]
          Length = 1301

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 19  REEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENV 70
           + +  +   +   + +SV   T V  NC H T+ +G       HCN+V  +V
Sbjct: 806 QHKSPYTCPECGAICRSVHFQTHVTKNCLHYTRRVGFRCV---HCNVVYSDV 854


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,329,596
Number of Sequences: 37866
Number of extensions: 165256
Number of successful extensions: 678
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 14
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.