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Search of human proteins with 8394499
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8394499 ubiquitin associated protein 1 [Homo sapiens]
(502 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8394499 ubiquitin associated protein 1 [Homo sapiens] 1000 0.0
gi|239756309 PREDICTED: similar to rCG58239 [Homo sapiens] 92 1e-18
gi|239750855 PREDICTED: similar to rCG58239 [Homo sapiens] 92 1e-18
gi|239745218 PREDICTED: hypothetical protein XP_002343390 [Homo ... 92 1e-18
gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo sapi... 40 0.005
gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo sapi... 40 0.005
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 37 0.042
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 37 0.042
gi|169790851 holocytochrome c synthase [Homo sapiens] 37 0.042
gi|169790849 holocytochrome c synthase [Homo sapiens] 37 0.042
gi|239751395 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.16
gi|239745904 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.16
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 34 0.35
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 34 0.35
gi|38679977 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo ... 33 0.60
gi|38679974 acetyl-Coenzyme A carboxylase alpha isoform 4 [Homo ... 33 0.60
gi|38679971 acetyl-Coenzyme A carboxylase alpha isoform 3 [Homo ... 33 0.60
gi|38679967 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo ... 33 0.60
gi|38679960 acetyl-Coenzyme A carboxylase alpha isoform 1 [Homo ... 33 0.60
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 33 0.60
gi|23957692 myocardin isoform 2 [Homo sapiens] 33 0.79
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 33 0.79
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 33 0.79
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 33 0.79
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 33 0.79
gi|115527106 vitelliform macular dystrophy 2-like 3 isoform 2 [H... 33 0.79
gi|115527104 vitelliform macular dystrophy 2-like 3 isoform 1 [H... 33 0.79
gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC... 32 1.0
gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC... 32 1.0
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 32 1.0
>gi|8394499 ubiquitin associated protein 1 [Homo sapiens]
Length = 502
Score = 1000 bits (2585), Expect = 0.0
Identities = 502/502 (100%), Positives = 502/502 (100%)
Query: 1 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK 60
MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
Sbjct: 1 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK 60
Query: 61 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI 120
KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
Sbjct: 61 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI 120
Query: 121 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL 180
LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
Sbjct: 121 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL 180
Query: 181 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL 240
RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
Sbjct: 181 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL 240
Query: 241 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN 300
GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
Sbjct: 241 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN 300
Query: 301 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP 360
SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
Sbjct: 301 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP 360
Query: 361 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI 420
TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
Sbjct: 361 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI 420
Query: 421 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV 480
EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
Sbjct: 421 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV 480
Query: 481 LLLHNNDQDNALEDLMARAGAS 502
LLLHNNDQDNALEDLMARAGAS
Sbjct: 481 LLLHNNDQDNALEDLMARAGAS 502
>gi|239756309 PREDICTED: similar to rCG58239 [Homo sapiens]
Length = 156
Score = 91.7 bits (226), Expect = 1e-18
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 340 MPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETV 399
M SLSV + + P G P N P+ A L LS E+ + V
Sbjct: 1 MSSLSVFQSLSPYTCLPPLGGAPQPLN------PHKSHPDTAADLLSALSQEEQDLIGPV 54
Query: 400 VNMGYSYECVLRAMKKKG-ENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM 458
V +GY + A++K G +++ Q L YL A +L +G++ LV+EA+EM Q SE +
Sbjct: 55 VALGYPLRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAG 114
Query: 459 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 499
EFL+L +F +MGF+ IKEVLL+H N ++ ALE+L+A A
Sbjct: 115 EFLRLWEQFSDMGFQQDRIKEVLLVHGNRREQALEELVACA 155
>gi|239750855 PREDICTED: similar to rCG58239 [Homo sapiens]
Length = 156
Score = 91.7 bits (226), Expect = 1e-18
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 340 MPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETV 399
M SLSV + + P G P N P+ A L LS E+ + V
Sbjct: 1 MSSLSVFQSLSPYTCLPPLGGAPQPLN------PHKSHPDTAADLLSALSQEEQDLIGPV 54
Query: 400 VNMGYSYECVLRAMKKKG-ENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM 458
V +GY + A++K G +++ Q L YL A +L +G++ LV+EA+EM Q SE +
Sbjct: 55 VALGYPLRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAG 114
Query: 459 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 499
EFL+L +F +MGF+ IKEVLL+H N ++ ALE+L+A A
Sbjct: 115 EFLRLWEQFSDMGFQQDRIKEVLLVHGNRREQALEELVACA 155
>gi|239745218 PREDICTED: hypothetical protein XP_002343390 [Homo
sapiens]
Length = 156
Score = 91.7 bits (226), Expect = 1e-18
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 340 MPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETV 399
M SLSV + + P G P N P+ A L LS E+ + V
Sbjct: 1 MSSLSVFQSLSPYTCLPPLGGAPQPLN------PHKSHPDTAADLLSALSQEEQDLIGPV 54
Query: 400 VNMGYSYECVLRAMKKKG-ENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM 458
V +GY + A++K G +++ Q L YL A +L +G++ LV+EA+EM Q SE +
Sbjct: 55 VALGYPLRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAG 114
Query: 459 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 499
EFL+L +F +MGF+ IKEVLL+H N ++ ALE+L+A A
Sbjct: 115 EFLRLWEQFSDMGFQQDRIKEVLLVHGNRREQALEELVACA 155
>gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo
sapiens]
Length = 835
Score = 40.0 bits (92), Expect = 0.005
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 390 PSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEM 449
P CV T+V+MG+S + L+A++ ++E+ +D++F+H D L E A+++
Sbjct: 699 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH-------IDDLDAEAAMDI 751
Query: 450 HQ 451
+
Sbjct: 752 SE 753
>gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo
sapiens]
Length = 858
Score = 40.0 bits (92), Expect = 0.005
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 390 PSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEM 449
P CV T+V+MG+S + L+A++ ++E+ +D++F+H D L E A+++
Sbjct: 722 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH-------IDDLDAEAAMDI 774
Query: 450 HQ 451
+
Sbjct: 775 SE 776
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 37.0 bits (84), Expect = 0.042
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 248 LSSKVS-LPPIPAVSN----IKSLSFPKLDSDDSNQKTAK-LASTFHSTSCLRNGTFQNS 301
LSS ++ PP+ +S+ I S S S S+ T+ + S+F +++ + + + +S
Sbjct: 90 LSSTITPAPPMSVLSHHTLHITSNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSS 149
Query: 302 LKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPT 361
ST ++++ ++ T +S+ ++ S + TSS + +V S T S+ +T +
Sbjct: 150 FTTSTATTSTSISITSTSSISS-SITSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTSTS 208
Query: 362 VT---PPNFSVSQVPNMPSCPQAYSELQMLSPSERQC 395
T + S + + A S ++ L+P ++QC
Sbjct: 209 STFTSTTSTSTTSTSTTSTSTSATSSIRKLTPHQKQC 245
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 37.0 bits (84), Expect = 0.042
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 248 LSSKVS-LPPIPAVSN----IKSLSFPKLDSDDSNQKTAK-LASTFHSTSCLRNGTFQNS 301
LSS ++ PP+ +S+ I S S S S+ T+ + S+F +++ + + + +S
Sbjct: 90 LSSTITPAPPMSVLSHHTLHITSNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSS 149
Query: 302 LKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGPT 361
ST ++++ ++ T +S+ ++ S + TSS + +V S T S+ +T +
Sbjct: 150 FTTSTATTSTSISITSTSSISS-SITSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTSTS 208
Query: 362 VT---PPNFSVSQVPNMPSCPQAYSELQMLSPSERQC 395
T + S + + A S ++ L+P ++QC
Sbjct: 209 STFTSTTSTSTTSTSTTSTSTSATSSIRKLTPHQKQC 245
>gi|169790851 holocytochrome c synthase [Homo sapiens]
Length = 268
Score = 37.0 bits (84), Expect = 0.042
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 355 PPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMK 414
PPN P P F++S V S P+A SE + + PSE+ ++ G+ K
Sbjct: 87 PPNQTPAPDQP-FALSTVREESSIPRADSEKKWVYPSEQMFWNAMLKKGW---------K 136
Query: 415 KKGENIEQ--ILDYLFAHGQLCEKGFDPLLVEEALEMHQC 452
K E+I Q + + + H Q E+ + +L EAL +C
Sbjct: 137 WKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAEC 176
>gi|169790849 holocytochrome c synthase [Homo sapiens]
Length = 268
Score = 37.0 bits (84), Expect = 0.042
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 355 PPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMK 414
PPN P P F++S V S P+A SE + + PSE+ ++ G+ K
Sbjct: 87 PPNQTPAPDQP-FALSTVREESSIPRADSEKKWVYPSEQMFWNAMLKKGW---------K 136
Query: 415 KKGENIEQ--ILDYLFAHGQLCEKGFDPLLVEEALEMHQC 452
K E+I Q + + + H Q E+ + +L EAL +C
Sbjct: 137 WKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAEC 176
>gi|239751395 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 35.0 bits (79), Expect = 0.16
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 299 QNSLKPSTQSSASELNGHHTLGLSALNLDSGT--EMPALTSSQMPSLSVLSVCTEESSP- 355
++S T SS L +T L+ N + T P LT S P+L+ + T S+P
Sbjct: 36 RSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPT 95
Query: 356 --PNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPS 391
P++ PT+TP N N P+ S L+PS
Sbjct: 96 LTPSSPPTLTPSNTPTLTPSNTPTLTP--SNTPTLTPS 131
Score = 29.6 bits (65), Expect = 6.7
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 333 PALTSSQMPSLSVLS--VCTEESSP---PNTGPTVTPPNFSVSQVPNMPSCPQAYSELQM 387
P LT S P+L+ S + T S+P P++ PT+TP N N P+ S
Sbjct: 16 PTLTPSSTPTLTPSSQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTP--SSTPT 73
Query: 388 LSPS 391
L+PS
Sbjct: 74 LTPS 77
Score = 29.3 bits (64), Expect = 8.7
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 333 PALTSSQMPSLSVLS--VCTEESSP---PNTGPTVTPPNFSVSQVPNMPSCPQAYSELQM 387
P LT S P+L+ S + T S+P P++ PT+TP N N P+ S
Sbjct: 222 PILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNTPTLTP--SNTPT 279
Query: 388 LSPS 391
L+PS
Sbjct: 280 LTPS 283
>gi|239745904 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 35.0 bits (79), Expect = 0.16
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 299 QNSLKPSTQSSASELNGHHTLGLSALNLDSGT--EMPALTSSQMPSLSVLSVCTEESSP- 355
++S T SS L +T L+ N + T P LT S P+L+ + T S+P
Sbjct: 36 RSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPT 95
Query: 356 --PNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPS 391
P++ PT+TP N N P+ S L+PS
Sbjct: 96 LTPSSPPTLTPSNTPTLTPSNTPTLTP--SNTPTLTPS 131
Score = 29.6 bits (65), Expect = 6.7
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 333 PALTSSQMPSLSVLS--VCTEESSP---PNTGPTVTPPNFSVSQVPNMPSCPQAYSELQM 387
P LT S P+L+ S + T S+P P++ PT+TP N N P+ S
Sbjct: 16 PTLTPSSTPTLTPSSQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTP--SSTPT 73
Query: 388 LSPS 391
L+PS
Sbjct: 74 LTPS 77
Score = 29.3 bits (64), Expect = 8.7
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 333 PALTSSQMPSLSVLS--VCTEESSP---PNTGPTVTPPNFSVSQVPNMPSCPQAYSELQM 387
P LT S P+L+ S + T S+P P++ PT+TP N N P+ S
Sbjct: 222 PILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNTPTLTP--SNTPT 279
Query: 388 LSPS 391
L+PS
Sbjct: 280 LTPS 283
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 33.9 bits (76), Expect = 0.35
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 89 KVNSKSGPEGDSKMSFSKTHSTATMPPPINP--ILASLQHNSILTPTRVSSSATKQKVLS 146
K S GP GD+++ +S+ HS PP+ +L + +H+S T + A+ + L+
Sbjct: 270 KKESTLGPAGDTELLWSQPHSDVPCQPPLRTSCLLRTNRHHSAPETTGDKNRASPR--LN 327
Query: 147 PPHIKA---DFNLADF--ECEEDP 165
H++A ++A F EC EDP
Sbjct: 328 CGHMRALVRAHSIAGFSPECPEDP 351
>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
Length = 605
Score = 33.9 bits (76), Expect = 0.35
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 335 LTSSQMPSLSVLSVCTEESSPPNTGPTVTP-----------PNFSVSQVPNMPSCPQAYS 383
L Q PS + T+ SS N PT++ P + P + SC YS
Sbjct: 426 LNDIQHPSKKTTNDITQPSSKVNISPTISSESKLFSPAHKKPKTAQYSSPELKSCNPGYS 485
Query: 384 --ELQM--------LSPSERQCVETVVNMGYSYECVLRAMKKKGEN 419
ELQ+ L+P +C + ++ C+LR ++K GEN
Sbjct: 486 NSELQINMTDGPRTLNPDSPRCSK------HNRLCILRVVRKDGEN 525
>gi|38679977 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo
sapiens]
Length = 2346
Score = 33.1 bits (74), Expect = 0.60
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 396 VETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEK------------GFDPLLV 443
VET G+ +CV ++ ++ +L+Y+F+H Q+ +K G DP L
Sbjct: 997 VETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLT 1056
Query: 444 EEALEM 449
+E L +
Sbjct: 1057 DELLNI 1062
>gi|38679974 acetyl-Coenzyme A carboxylase alpha isoform 4 [Homo
sapiens]
Length = 2268
Score = 33.1 bits (74), Expect = 0.60
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 396 VETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEK------------GFDPLLV 443
VET G+ +CV ++ ++ +L+Y+F+H Q+ +K G DP L
Sbjct: 919 VETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLT 978
Query: 444 EEALEM 449
+E L +
Sbjct: 979 DELLNI 984
>gi|38679971 acetyl-Coenzyme A carboxylase alpha isoform 3 [Homo
sapiens]
Length = 2288
Score = 33.1 bits (74), Expect = 0.60
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 396 VETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEK------------GFDPLLV 443
VET G+ +CV ++ ++ +L+Y+F+H Q+ +K G DP L
Sbjct: 939 VETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLT 998
Query: 444 EEALEM 449
+E L +
Sbjct: 999 DELLNI 1004
>gi|38679967 acetyl-Coenzyme A carboxylase alpha isoform 2 [Homo
sapiens]
Length = 2346
Score = 33.1 bits (74), Expect = 0.60
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 396 VETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEK------------GFDPLLV 443
VET G+ +CV ++ ++ +L+Y+F+H Q+ +K G DP L
Sbjct: 997 VETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLT 1056
Query: 444 EEALEM 449
+E L +
Sbjct: 1057 DELLNI 1062
>gi|38679960 acetyl-Coenzyme A carboxylase alpha isoform 1 [Homo
sapiens]
Length = 2383
Score = 33.1 bits (74), Expect = 0.60
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 396 VETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEK------------GFDPLLV 443
VET G+ +CV ++ ++ +L+Y+F+H Q+ +K G DP L
Sbjct: 1034 VETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLT 1093
Query: 444 EEALEM 449
+E L +
Sbjct: 1094 DELLNI 1099
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 33.1 bits (74), Expect = 0.60
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 19/155 (12%)
Query: 327 DSGTEMPALTSSQMPSLSVLSVCTEESSPPN-TGPTVTPPNFSVSQVPNMPSCPQAYSEL 385
+S T P +S M E+ SP + PT +P + S S + S + +
Sbjct: 98 ESSTSFPPAPTSGMSHPP--PAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAAS 155
Query: 386 QMLSPSERQCVET-VVNMGYSYECVLRAMKKKGENIEQILDYLFA---------HGQLCE 435
+++ SE + + T +++MGY E V+ A++ N + ++YL HG + E
Sbjct: 156 TLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQE 215
Query: 436 KGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEM 470
EA + E +EFL+ +F+ M
Sbjct: 216 SQVSEQPATEA------AGENPLEFLRDQPQFQNM 244
>gi|23957692 myocardin isoform 2 [Homo sapiens]
Length = 938
Score = 32.7 bits (73), Expect = 0.79
Identities = 75/351 (21%), Positives = 127/351 (36%), Gaps = 53/351 (15%)
Query: 115 PPINPILASLQHNSILTPTRVSSSATKQKVLSPPHI------KADFNLADFECEEDPFDN 168
PPI+P + L L T +S + SP H+ + N E D D+
Sbjct: 456 PPISPASSDLSVAGSLPDTFNDASPSFGLHPSPVHVCTEESLMSSLNGGSVPSELDGLDS 515
Query: 169 LELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDF--K 226
+ K + EK+++ N L Q+ + + LQ ++ E+ L F
Sbjct: 516 EKDKMLVEKQKVINELTWKLQQEQRQVEELRMQ-------LQKQKRNNCSEKKPLPFLAA 568
Query: 227 PLHKPNGFITLPQLGNCE-KMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLAS 285
+ + + P K SS PP + ++ L +S+ +T L+S
Sbjct: 569 SIKQEEAVSSCPFASQVPVKRQSSSSECHPPACEAAQLQPLG--NAHCVESSDQTNVLSS 626
Query: 286 TFHSTSCLRNGTFQNSLK-PSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLS 344
TF S C + ++K P S N H L S+ G + + SSQ
Sbjct: 627 TFLSPQCSPQHSPLGAVKSPQHISLPPSPNNPHFLPSSSGAQGEGHRVSSPISSQ----- 681
Query: 345 VLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGY 404
VCT + + ++ V P FS+ P A SE V
Sbjct: 682 ---VCTAQMAGLHSSDKVGP-KFSIPS-PTFSKSSSAISE---------------VTQPP 721
Query: 405 SYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEE 455
SYE ++ + + ++++LD L G+ + +A E H C ++
Sbjct: 722 SYEDAVKQQMTRSQQMDELLDVLIESGE---------MPADAREDHSCLQK 763
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 32.7 bits (73), Expect = 0.79
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 57 SLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPE--GDSKMSFSKTHSTATMP 114
+LE+K + +E+ +EE R + K+ E NS+ GDS S T ++
Sbjct: 147 ALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSITQESSFGS 206
Query: 115 PPINPILASLQ------HNSILTPTRVSSSATKQKVLSP-----PHIKADFNLADFECEE 163
P N + + + H + L + SSS + LSP HI A+
Sbjct: 207 PTGNQMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTS 266
Query: 164 DPFDNLELKT 173
+PF + + T
Sbjct: 267 NPFKSSKCST 276
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 32.7 bits (73), Expect = 0.79
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 57 SLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPE--GDSKMSFSKTHSTATMP 114
+LE+K + +E+ +EE R + K+ E NS+ GDS S T ++
Sbjct: 147 ALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSITQESSFGS 206
Query: 115 PPINPILASLQ------HNSILTPTRVSSSATKQKVLSP-----PHIKADFNLADFECEE 163
P N + + + H + L + SSS + LSP HI A+
Sbjct: 207 PTGNQMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTS 266
Query: 164 DPFDNLELKT 173
+PF + + T
Sbjct: 267 NPFKSSKCST 276
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 32.7 bits (73), Expect = 0.79
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 57 SLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPE--GDSKMSFSKTHSTATMP 114
+LE+K + +E+ +EE R + K+ E NS+ GDS S T ++
Sbjct: 228 ALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSITQESSFGS 287
Query: 115 PPINPILASLQ------HNSILTPTRVSSSATKQKVLSP-----PHIKADFNLADFECEE 163
P N + + + H + L + SSS + LSP HI A+
Sbjct: 288 PTGNQMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTS 347
Query: 164 DPFDNLELKT 173
+PF + + T
Sbjct: 348 NPFKSSKCST 357
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 32.7 bits (73), Expect = 0.79
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 57 SLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPE--GDSKMSFSKTHSTATMP 114
+LE+K + +E+ +EE R + K+ E NS+ GDS S T ++
Sbjct: 228 ALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSITQESSFGS 287
Query: 115 PPINPILASLQ------HNSILTPTRVSSSATKQKVLSP-----PHIKADFNLADFECEE 163
P N + + + H + L + SSS + LSP HI A+
Sbjct: 288 PTGNQMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTS 347
Query: 164 DPFDNLELKT 173
+PF + + T
Sbjct: 348 NPFKSSKCST 357
>gi|115527106 vitelliform macular dystrophy 2-like 3 isoform 2 [Homo
sapiens]
Length = 455
Score = 32.7 bits (73), Expect = 0.79
Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 46 LQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFS 105
L +RE +L+ T + + I+ E I AEA V + G DS S
Sbjct: 256 LSTIRETSQTSTLQSLTPQSSVRTSPIK-MPLVPEVLITAAEAPVPTSGGYHHDSATSIL 314
Query: 106 KTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDP 165
+ T P + SIL+P S T SP + A F CEEDP
Sbjct: 315 SSEFTGVQPSKTEQQQGPM--GSILSP---SEKETPPGGPSPQTVSASAEENIFNCEEDP 369
Query: 166 FD 167
D
Sbjct: 370 GD 371
>gi|115527104 vitelliform macular dystrophy 2-like 3 isoform 1 [Homo
sapiens]
Length = 668
Score = 32.7 bits (73), Expect = 0.79
Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 46 LQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFS 105
L +RE +L+ T + + I+ E I AEA V + G DS S
Sbjct: 469 LSTIRETSQTSTLQSLTPQSSVRTSPIK-MPLVPEVLITAAEAPVPTSGGYHHDSATSIL 527
Query: 106 KTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDP 165
+ T P + SIL+P S T SP + A F CEEDP
Sbjct: 528 SSEFTGVQPSKTEQQQGPM--GSILSP---SEKETPPGGPSPQTVSASAEENIFNCEEDP 582
Query: 166 FD 167
D
Sbjct: 583 GD 584
>gi|90669228 deleted in lung and esophageal cancer 1 isoform
DLEC1-S3 [Homo sapiens]
Length = 1778
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
Query: 16 YLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEA 75
Y D VPF + K G SLP C ++ FS EK++++ E KK+E++
Sbjct: 213 YTDTVPFHSAPK-----------GISLPGCSKLT------FSCEKRSVQKKELNKKLEDS 255
Query: 76 EREAECKIAEAEAKVN 91
R+ K+AE E +++
Sbjct: 256 CRK---KLAEFEDELD 268
>gi|90669194 deleted in lung and esophageal cancer 1 isoform
DLEC1-N1 [Homo sapiens]
Length = 1755
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
Query: 16 YLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEA 75
Y D VPF + K G SLP C ++ FS EK++++ E KK+E++
Sbjct: 213 YTDTVPFHSAPK-----------GISLPGCSKLT------FSCEKRSVQKKELNKKLEDS 255
Query: 76 EREAECKIAEAEAKVN 91
R+ K+AE E +++
Sbjct: 256 CRK---KLAEFEDELD 268
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 32.3 bits (72), Expect = 1.0
Identities = 43/166 (25%), Positives = 63/166 (37%), Gaps = 9/166 (5%)
Query: 228 LHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDD--SNQKTAKLAS 285
L KP F L +L KM S+V P A +N +LS+ S Q TA ++
Sbjct: 1460 LQKPGSFSKLSKLLEVAKMPPESEVMTPKPNAGANGCTLSYQNSGKHSLGSVQSTATQSN 1519
Query: 286 TFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPAL----TSSQMP 341
+ S N F + + N L+ N + +P TS
Sbjct: 1520 VEKADS---NNLFNTGSSGPGKFYSPLPNDQLLKTLTEKNRQWFSLLPRTPCDDTSLTHA 1576
Query: 342 SLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQM 387
+S S+ T +S PP+ P+ TP S + P A S LQ+
Sbjct: 1577 DMSTASLVTPQSQPPSKSPSPTPAPLGSSAQNPVGLNPFALSPLQV 1622
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,125,029
Number of Sequences: 37866
Number of extensions: 934188
Number of successful extensions: 3783
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 3554
Number of HSP's gapped (non-prelim): 302
length of query: 502
length of database: 18,247,518
effective HSP length: 107
effective length of query: 395
effective length of database: 14,195,856
effective search space: 5607363120
effective search space used: 5607363120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.