Guide to the Human Genome
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Name: BCO2 Sequence: fasta or formatted (545aa) NCBI GI: 82617628
Description:

beta-carotene dioxygenase 2 isoform b

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Other entries for this name:
alt prot [579aa] beta-carotene dioxygenase 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         30           3
 C cysteine            2.0         11           2
 D aspartate           4.6         25           1
 E glutamate           6.1         33           2
 F phenylalanine       6.4         35           2
 G glycine             8.4         46           2
 H histidine           2.8         15           1
 I isoleucine          5.1         28           2
 K lysine              6.8         37           2
 L leucine             7.2         39           2
 M methionine          1.8         10           1
 N asparagine          5.7         31           1
 P proline             5.7         31           2
 Q glutamine           3.5         19           1
 R arginine            4.4         24           2
 S serine              5.7         31           1
 T threonine           5.3         29           2
 V valine              7.2         39           2
 W tryptophan          1.5          8           1
 Y tyrosine            4.4         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-carotene dioxygenase 2 isoform b 
BCO2                  1.000   beta-carotene dioxygenase 2 isoform a 
RPE65                 0.362   retinal pigment epithelium-specific protein 65kDa [Ho...
BCMO1                 0.352   beta-carotene 15,15'-monooxygenase 
L1CAM                 0.006   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.006   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.006   L1 cell adhesion molecule isoform 1 precursor 
TNKS                  0.005   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
USP26                 0.004   ubiquitin-specific protease 26 
TTN                   0.004   titin isoform N2-A 
TTN                   0.004   titin isoform novex-2 
TTN                   0.004   titin isoform novex-1 
TTN                   0.004   titin isoform N2-B 
SREBF1                0.004   sterol regulatory element binding transcription fact...
SREBF1                0.004   sterol regulatory element binding transcription fact...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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