Guide to the Human Genome
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Name: BCMO1 Sequence: fasta or formatted (547aa) NCBI GI: 74027270
Description:

beta-carotene 15,15'-monooxygenase

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         37           2
 C cysteine            1.6          9           1
 D aspartate           6.4         35           2
 E glutamate           6.2         34           2
 F phenylalanine       4.8         26           1
 G glycine             4.8         26           1
 H histidine           3.1         17           2
 I isoleucine          6.0         33           2
 K lysine              6.4         35           2
 L leucine             8.0         44           2
 M methionine          2.0         11           1
 N asparagine          4.4         24           1
 P proline             5.1         28           1
 Q glutamine           3.1         17           1
 R arginine            4.9         27           2
 S serine              6.0         33           2
 T threonine           6.9         38           2
 V valine              6.6         36           2
 W tryptophan          1.5          8           1
 Y tyrosine            5.3         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-carotene 15,15'-monooxygenase 
BCO2                  0.355   beta-carotene dioxygenase 2 isoform a 
BCO2                  0.355   beta-carotene dioxygenase 2 isoform b 
RPE65                 0.344   retinal pigment epithelium-specific protein 65kDa [Ho...
ARHGEF10              0.007   Rho guanine nucleotide exchange factor 10 
GGA2                  0.006   ADP-ribosylation factor binding protein 2 
TXNDC17               0.006   thioredoxin-like 5 
GBA2                  0.006   bile acid beta-glucosidase 
SREBF1                0.005   sterol regulatory element binding transcription fact...
SREBF1                0.005   sterol regulatory element binding transcription fact...
TFAP2C                0.005   transcription factor AP-2 gamma 
LOC100293304          0.004   PREDICTED: hypothetical protein 
LOC100290661          0.004   PREDICTED: hypothetical protein XP_002347418 
LOC100289058          0.004   PREDICTED: hypothetical protein XP_002343288 
OMP                   0.004   olfactory marker protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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