Search of human proteins with 81295798

Search of human proteins with 81295798

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81295798 HERV-H LTR-associating 3 isoform 3 [Homo sapiens]
         (76 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|81295798 HERV-H LTR-associating 3 isoform 3 [Homo sapiens]         162   7e-41
gi|72534678 HERV-H LTR-associating 3 isoform 1 [Homo sapiens]         118   1e-27
gi|81295796 HERV-H LTR-associating 3 isoform 2 [Homo sapiens]         115   6e-27
gi|21361827 methyltransferase like 3 [Homo sapiens]                    27   3.5  
gi|190684679 hypothetical protein LOC126074 [Homo sapiens]             27   3.5  
gi|67782311 superkiller viralicidic activity 2-like homolog [Hom...    27   4.6  
gi|34594669 HCCA2 protein [Homo sapiens]                               26   6.1  
gi|154800485 centromere protein N isoform 1 [Homo sapiens]             26   7.9  
gi|154800483 centromere protein N isoform 2 [Homo sapiens]             26   7.9  

>gi|81295798 HERV-H LTR-associating 3 isoform 3 [Homo sapiens]
          Length = 76

 Score =  162 bits (409), Expect = 7e-41
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVLSTERGP 60
          MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVLSTERGP
Sbjct: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVLSTERGP 60

Query: 61 YPDPKRAFLDLLQERI 76
          YPDPKRAFLDLLQERI
Sbjct: 61 YPDPKRAFLDLLQERI 76


>gi|72534678 HERV-H LTR-associating 3 isoform 1 [Homo sapiens]
          Length = 121

 Score =  118 bits (295), Expect = 1e-27
 Identities = 58/76 (76%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV-LSTERG 59
          MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV L   +G
Sbjct: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCLVNGKG 60

Query: 60 PYPDPKRAFLDLLQER 75
              P+ + L  L  +
Sbjct: 61 SLSRPQESILGSLARK 76


>gi|81295796 HERV-H LTR-associating 3 isoform 2 [Homo sapiens]
          Length = 114

 Score =  115 bits (289), Expect = 6e-27
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV 53
          MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV
Sbjct: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV 53


>gi|21361827 methyltransferase like 3 [Homo sapiens]
          Length = 580

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   FGACYKQPLKPSGSEPPAEECRMTPRHAGCDV-TEMQRILSQPTFTEHLLRAV 53
           F +     L  S SEP  E  + + +HA  DV  E++ +L+Q +  E   + V
Sbjct: 190 FASSLVSGLNSSASEPAKEPAKKSRKHAASDVDLEIESLLNQQSTKEQQSKKV 242


>gi|190684679 hypothetical protein LOC126074 [Homo sapiens]
          Length = 229

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 26  PRHAGC--DVTEMQRILSQ-PTFTEHLLRAVLSTERGPYPDPKRAFLDLLQE 74
           PR  G   D   +Q+I  Q P  T  L R + S    P P P    LD L+E
Sbjct: 49  PRGTGTTLDPMRLQKIRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEE 100


>gi|67782311 superkiller viralicidic activity 2-like homolog [Homo
           sapiens]
          Length = 1246

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 12  PSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTF 45
           P   EPP++E    P  A   V +  R++ QP F
Sbjct: 272 PEAPEPPSQEQWAIPVDATSPVGDFYRLIPQPAF 305


>gi|34594669 HCCA2 protein [Homo sapiens]
          Length = 237

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 7  KQPLKPSGSEPPAEECR--MTPRHAGCDVTEMQ 37
          K   KP+G +P AEE +  + P H    +T+ Q
Sbjct: 7  KSKAKPNGKKPAAEERKAYLEPEHTKARITDFQ 39


>gi|154800485 centromere protein N isoform 1 [Homo sapiens]
          Length = 353

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 6   YKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVLSTERGPYPDPK 65
           Y Q  +   S  P +E     R  G D+    RI+ +    +  ++ +     G YP P+
Sbjct: 209 YNQTFETHNSTTPLQE-----RSLGLDINMDSRIIHENIVEKERVQRITQETFGDYPQPQ 263

Query: 66  RAF 68
             F
Sbjct: 264 LEF 266


>gi|154800483 centromere protein N isoform 2 [Homo sapiens]
          Length = 339

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 6   YKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVLSTERGPYPDPK 65
           Y Q  +   S  P +E     R  G D+    RI+ +    +  ++ +     G YP P+
Sbjct: 209 YNQTFETHNSTTPLQE-----RSLGLDINMDSRIIHENIVEKERVQRITQETFGDYPQPQ 263

Query: 66  RAF 68
             F
Sbjct: 264 LEF 266


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,874,185
Number of Sequences: 37866
Number of extensions: 152920
Number of successful extensions: 395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 9
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.