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Search of human proteins with 7706617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706617 glycerophosphodiester phosphodiesterase 1 [Homo
sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706617 glycerophosphodiester phosphodiesterase 1 [Homo sapiens] 687 0.0
gi|21361649 osteoblast differentiation promoting factor protein ... 76 5e-14
gi|32698962 glycerophosphodiester phosphodiesterase domain conta... 59 6e-09
gi|189571657 glycerophosphodiester phosphodiesterase domain cont... 54 1e-07
gi|33457301 glycerophosphodiester phosphodiesterase domain conta... 53 4e-07
gi|25901062 hypothetical protein LOC56261 [Homo sapiens] 44 2e-04
gi|146198640 glycerophosphodiester phosphodiesterase domain cont... 44 2e-04
gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens] 32 0.60
gi|195972795 chemokine (C-C motif) receptor-like 2 isoform 2 [Ho... 32 0.78
gi|68215224 chemokine (C-C motif) receptor-like 2 isoform 1 [Hom... 32 0.78
gi|71743840 class IV alcohol dehydrogenase, mu or sigma subunit ... 30 3.0
gi|21361910 zinc finger, DHHC domain containing 12 [Homo sapiens] 30 3.0
gi|52317223 olfactory receptor, family 2, subfamily T, member 5 ... 30 3.9
gi|52317217 olfactory receptor, family 2, subfamily T, member 29... 30 3.9
gi|229892308 shugoshin-like 2 isoform 2 [Homo sapiens] 29 5.1
gi|229892306 shugoshin-like 2 isoform 1 [Homo sapiens] 29 5.1
gi|229892197 shugoshin-like 2 isoform 3 [Homo sapiens] 29 5.1
gi|33598948 phospholipase C, gamma 1 isoform a [Homo sapiens] 29 5.1
gi|33598946 phospholipase C, gamma 1 isoform b [Homo sapiens] 29 5.1
gi|17105394 ribosomal protein L23a [Homo sapiens] 29 6.6
gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo ... 28 8.7
>gi|7706617 glycerophosphodiester phosphodiesterase 1 [Homo sapiens]
Length = 331
Score = 687 bits (1774), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MWLWEDQGGLLGPFSFLLLVLLLVTRSPVNACLLTGSLFVLLRVFSFEPVPSCRALQVLK 60
MWLWEDQGGLLGPFSFLLLVLLLVTRSPVNACLLTGSLFVLLRVFSFEPVPSCRALQVLK
Sbjct: 1 MWLWEDQGGLLGPFSFLLLVLLLVTRSPVNACLLTGSLFVLLRVFSFEPVPSCRALQVLK 60
Query: 61 PRDRISAIAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTVDRTT 120
PRDRISAIAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTVDRTT
Sbjct: 61 PRDRISAIAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTVDRTT 120
Query: 121 DGTGRLCDLTFEQIRKLNPAANHRLRNDFPDEKIPTLREAVAECLNHNLTIFFDVKGHAH 180
DGTGRLCDLTFEQIRKLNPAANHRLRNDFPDEKIPTLREAVAECLNHNLTIFFDVKGHAH
Sbjct: 121 DGTGRLCDLTFEQIRKLNPAANHRLRNDFPDEKIPTLREAVAECLNHNLTIFFDVKGHAH 180
Query: 181 KATEALKKMYMEFPQLYNNSVVCSFLPEVIYKMRQTDRDVITALTHRPWSLSHTGDGKPR 240
KATEALKKMYMEFPQLYNNSVVCSFLPEVIYKMRQTDRDVITALTHRPWSLSHTGDGKPR
Sbjct: 181 KATEALKKMYMEFPQLYNNSVVCSFLPEVIYKMRQTDRDVITALTHRPWSLSHTGDGKPR 240
Query: 241 YDTFWKHFIFVMMDILLDWSMHNILWYLCGISAFLMQKDFVSPAYLKKWSAKGIQVVGWT 300
YDTFWKHFIFVMMDILLDWSMHNILWYLCGISAFLMQKDFVSPAYLKKWSAKGIQVVGWT
Sbjct: 241 YDTFWKHFIFVMMDILLDWSMHNILWYLCGISAFLMQKDFVSPAYLKKWSAKGIQVVGWT 300
Query: 301 VNTFDEKSYYESHLGSSYITDSMVEDCEPHF 331
VNTFDEKSYYESHLGSSYITDSMVEDCEPHF
Sbjct: 301 VNTFDEKSYYESHLGSSYITDSMVEDCEPHF 331
>gi|21361649 osteoblast differentiation promoting factor protein
[Homo sapiens]
Length = 539
Score = 75.9 bits (185), Expect = 5e-14
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 25/144 (17%)
Query: 58 VLKPRD---RISAIAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDN 114
+++PRD + + HRG APENTL ++R+ A+ GAT E D+ +SDG+P LMHD
Sbjct: 214 IMEPRDLPPKPGLVGHRGAPMLAPENTLMSLRKTAECGATVFETDVMVSSDGVPFLMHDE 273
Query: 115 TVDRTTDG--------TGRLCDLTFEQIRKLNPAANHRLRNDF--------PDEK----- 153
+ RTT+ T D ++ ++++LN + R F PD+K
Sbjct: 274 HLSRTTNVASVFPTRITAHSSDFSWTELKRLNAGSWFLERRPFWGAKPLAGPDQKEAESQ 333
Query: 154 -IPTLREAVAECLNHNLTIFFDVK 176
+P L E + E NL+I FD++
Sbjct: 334 TVPALEELLEEAAALNLSIMFDLR 357
>gi|32698962 glycerophosphodiester phosphodiesterase domain
containing 1 [Homo sapiens]
Length = 314
Score = 58.9 bits (141), Expect = 6e-09
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 20/253 (7%)
Query: 68 IAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTVDRTTDGTGRLC 127
I+HRGG+ + ENT+AA + A K G +ELD T D V+ HD + R T +
Sbjct: 43 ISHRGGAGENLENTMAAFQHAVKIGTDTLELDCHITKDEQVVVSHDENLKRATGVNVNIS 102
Query: 128 DLTF----EQIRKLNPAANHRLRNDFPDEKIPTLREAVAECLNHNLTIFFDVKGHA--HK 181
DL + + KL+ + + + D +IP L+E N + I V + K
Sbjct: 103 DLKYCELPPYLGKLDVSFQRACQCEGKDNRIPLLKEVFEAFPNTPINIDIKVNNNVLIKK 162
Query: 182 ATEALKKMYMEFPQLYNNSVVCSFLPEVIYKMRQTDRDVITALTHRPWSLSHTGDGKPRY 241
+E +K+ E ++ N+ + E YK +D ++ +L L G +
Sbjct: 163 VSELVKRYNREHLTVWGNANY--EIVEKCYK-ENSDIPILFSLQRVLLILGLFFTGLLPF 219
Query: 242 DTFWKHFIFVMMDILL-----DWSMHNILWYLCGISAFLMQKDFVSPAYLKKWSAKGIQV 296
+ F + M ++ +M +L +S L+ + A +A+GIQV
Sbjct: 220 VPIREQFFEIPMPSIILKLKEPHTMSRSQKFLIWLSDLLLMR----KALFDHLTARGIQV 275
Query: 297 VGWTVNTFDEKSY 309
W +N +E+ Y
Sbjct: 276 YIWVLN--EEQEY 286
>gi|189571657 glycerophosphodiester phosphodiesterase domain
containing 5 [Homo sapiens]
Length = 605
Score = 54.3 bits (129), Expect = 1e-07
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 68 IAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTVDRTTDGTGRLC 127
I HRG APE+TL + R+A + G++ DI + DG+P LMHD T+ RTT+
Sbjct: 231 IGHRGAPMLAPEHTLMSFRKALEQKLYGLQADITISLDGVPFLMHDTTLRRTTNVEEEFP 290
Query: 128 DLTFEQIRKLNPAANHRL 145
+L LN RL
Sbjct: 291 ELARRPASMLNWTTLQRL 308
>gi|33457301 glycerophosphodiester phosphodiesterase domain
containing 4 [Homo sapiens]
Length = 520
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 33 LLTGSLFVLLRVFSFEPVPSCRALQVLKPRDRISAIAHRGGSHDAPENTLAAIRQAAKNG 92
+L G + L ++S P + + L P+ I HRG PENT+ + +A ++G
Sbjct: 172 ILLGLYLMPLGIYS----PCIQEKENLGPKPTI--FGHRGAPMLGPENTMMSFEKAVEHG 225
Query: 93 ATGVELDIEFTSDGIPVLMHDNTVDRTTD 121
A G+E DI + D +P LMHD + RTT+
Sbjct: 226 AHGLETDIHLSYDHVPFLMHDFDLKRTTN 254
>gi|25901062 hypothetical protein LOC56261 [Homo sapiens]
Length = 672
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 60 KPRDRISAIAHRGGSHDAP--------ENTLAAIRQAAKNGATGVELDIEFTSDGIPVLM 111
KPR + + HRG + ENT+A++R AA +GA VE D+ + D +PV+
Sbjct: 314 KPRIPLD-VGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFDVHLSKDFVPVVY 372
Query: 112 HDNT 115
HD T
Sbjct: 373 HDLT 376
>gi|146198640 glycerophosphodiester phosphodiesterase domain
containing 3 [Homo sapiens]
Length = 318
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 61 PRDRISAIAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTVDRTT 120
P RI AHRGGS + ENT+ A+ + + +ELD + T D + V+ HD + R +
Sbjct: 35 PTFRIRLGAHRGGSGELLENTMEAMENSMAQRSDLLELDCQLTRDRVVVVSHDENLCRQS 94
Query: 121 DGTGRLCDLTFEQI 134
+ L FE +
Sbjct: 95 GLNRDVGSLDFEDL 108
>gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens]
Length = 1009
Score = 32.3 bits (72), Expect = 0.60
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 143 HRLRNDFPDEKIPTLREAVAEC---LNHNLTIFFDVKGHAHKATEALKKMYMEFPQLYNN 199
HR+ ++ + REAV LN I+ D G+ + ++ Y+ + NN
Sbjct: 698 HRIEQEYQAGPLELNREAVLRTSTNLNSQQVIYSDNNGY-----QMQRRPYVSY---VNN 749
Query: 200 SVVCSFLPEVIYKMRQTDRDVITALTHRPWSLSHTGDGKPR---YDTFWKHFIFVM-MDI 255
S+ ++ P V + + + L+ R +S G+G+ + W +F + + ++
Sbjct: 750 SIARNYYPMVQSAFMEDGKSRLVLLSERAHGISSQGNGQVEVMLHRRLWNNFDWDLGYNL 809
Query: 256 LLDWS--MHNILWYLCG 270
L+ + +H +LW L G
Sbjct: 810 TLNDTSVVHPVLWLLLG 826
>gi|195972795 chemokine (C-C motif) receptor-like 2 isoform 2 [Homo
sapiens]
Length = 356
Score = 32.0 bits (71), Expect = 0.78
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 200 SVVCSFLPE-VIYKMRQTDRDVITALTHRPWSLSHTGDGKPRYDTFWKHFIFVMMDI 255
+ + + LPE V+YK + D+ A + P+ P +TFWKHF+ + M+I
Sbjct: 170 TAILATLPEFVVYKPQMEDQKYKCAFSRTPFL--------PADETFWKHFLTLKMNI 218
>gi|68215224 chemokine (C-C motif) receptor-like 2 isoform 1 [Homo
sapiens]
Length = 344
Score = 32.0 bits (71), Expect = 0.78
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 200 SVVCSFLPE-VIYKMRQTDRDVITALTHRPWSLSHTGDGKPRYDTFWKHFIFVMMDI 255
+ + + LPE V+YK + D+ A + P+ P +TFWKHF+ + M+I
Sbjct: 158 TAILATLPEFVVYKPQMEDQKYKCAFSRTPFL--------PADETFWKHFLTLKMNI 206
>gi|71743840 class IV alcohol dehydrogenase, mu or sigma subunit
[Homo sapiens]
Length = 386
Score = 30.0 bits (66), Expect = 3.0
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 150 PDEKIPTLREAVAECLNHNLTIFFDVKGHAHKATEALKKMYMEFPQLYNNSVVCSFLPEV 209
P + + E ++E +N+ F+V GH +AL +M Y SVV P
Sbjct: 255 PKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMN----YGTSVVVGVPPSA 310
Query: 210 IYKMRQTDRDVITALTHRPWSLSHTGDGKPRYD 242
+ D + T R W G K R D
Sbjct: 311 ----KMLTYDPMLLFTGRTWKGCVFGGLKSRDD 339
>gi|21361910 zinc finger, DHHC domain containing 12 [Homo sapiens]
Length = 267
Score = 30.0 bits (66), Expect = 3.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 14/46 (30%)
Query: 4 WEDQGGLLGPFSFLLLVLLLVTRSPVNACLLTGSLFVLLRVFSFEP 49
WE+QG LL P +FLLLVL GSL + L V +P
Sbjct: 38 WEEQGELLLPLTFLLLVL--------------GSLLLYLAVSLMDP 69
>gi|52317223 olfactory receptor, family 2, subfamily T, member 5
[Homo sapiens]
Length = 315
Score = 29.6 bits (65), Expect = 3.9
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 191 MEFPQLYNNSVVCSFLPEVIYKMRQTDRDVITALTH-----RPWSLSHTGDGKPRYDTFW 245
+ +P L N+ V C FL + + D ++T +T R W + H F+
Sbjct: 134 LRYPVLMNHRV-CLFLASGCWFLGSVDGFMLTPITMSFPFCRSWEIHH----------FF 182
Query: 246 KHFIFVMMDILLDWSMHNILWYLCGISAFLMQKDFVSPAYL 286
V + D S++ L YLC + L+ +S +YL
Sbjct: 183 CEVPAVTILSCSDTSLYETLMYLCCVLMLLIPVTIISSSYL 223
>gi|52317217 olfactory receptor, family 2, subfamily T, member 29
[Homo sapiens]
Length = 309
Score = 29.6 bits (65), Expect = 3.9
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 191 MEFPQLYNNSVVCSFLPEVIYKMRQTDRDVITALTH-----RPWSLSHTGDGKPRYDTFW 245
+ +P L N+ V C FL + + D ++T +T R W + H F+
Sbjct: 128 LRYPVLMNHRV-CLFLASGCWFLGSVDGFMLTPITMSFPFCRSWEIHH----------FF 176
Query: 246 KHFIFVMMDILLDWSMHNILWYLCGISAFLMQKDFVSPAYL 286
V + D S++ L YLC + L+ +S +YL
Sbjct: 177 CEVPAVTILSCSDTSLYETLMYLCCVLMLLIPVTIISSSYL 217
>gi|229892308 shugoshin-like 2 isoform 2 [Homo sapiens]
Length = 1260
Score = 29.3 bits (64), Expect = 5.1
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 99 DIEFTSDGIPVLMHDNTVDRTTDGTGRLCDLTFEQIRKLNPAANHRLRNDFPDEKIPTLR 158
D E S+ + V TVD G LCD + I +L R + + KI LR
Sbjct: 848 DKETISENLQVTNEFQTVDLLIKDNGNLCDYDTQNILELKKYVTDRKSAEQNESKINKLR 907
Query: 159 EAV---AECLNHNLTIFFDVKGHAH 180
V E ++ I+ D AH
Sbjct: 908 NKVNWKTEIISEMNQIYEDNDKDAH 932
>gi|229892306 shugoshin-like 2 isoform 1 [Homo sapiens]
Length = 1265
Score = 29.3 bits (64), Expect = 5.1
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 99 DIEFTSDGIPVLMHDNTVDRTTDGTGRLCDLTFEQIRKLNPAANHRLRNDFPDEKIPTLR 158
D E S+ + V TVD G LCD + I +L R + + KI LR
Sbjct: 848 DKETISENLQVTNEFQTVDLLIKDNGNLCDYDTQNILELKKYVTDRKSAEQNESKINKLR 907
Query: 159 EAV---AECLNHNLTIFFDVKGHAH 180
V E ++ I+ D AH
Sbjct: 908 NKVNWKTEIISEMNQIYEDNDKDAH 932
>gi|229892197 shugoshin-like 2 isoform 3 [Homo sapiens]
Length = 1261
Score = 29.3 bits (64), Expect = 5.1
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 99 DIEFTSDGIPVLMHDNTVDRTTDGTGRLCDLTFEQIRKLNPAANHRLRNDFPDEKIPTLR 158
D E S+ + V TVD G LCD + I +L R + + KI LR
Sbjct: 848 DKETISENLQVTNEFQTVDLLIKDNGNLCDYDTQNILELKKYVTDRKSAEQNESKINKLR 907
Query: 159 EAV---AECLNHNLTIFFDVKGHAH 180
V E ++ I+ D AH
Sbjct: 908 NKVNWKTEIISEMNQIYEDNDKDAH 932
>gi|33598948 phospholipase C, gamma 1 isoform a [Homo sapiens]
Length = 1291
Score = 29.3 bits (64), Expect = 5.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 73 GSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTV 116
G + E++L A + + G +ELD DG+PV+ H +T+
Sbjct: 341 GDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL 384
>gi|33598946 phospholipase C, gamma 1 isoform b [Homo sapiens]
Length = 1290
Score = 29.3 bits (64), Expect = 5.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 73 GSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTV 116
G + E++L A + + G +ELD DG+PV+ H +T+
Sbjct: 341 GDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL 384
>gi|17105394 ribosomal protein L23a [Homo sapiens]
Length = 156
Score = 28.9 bits (63), Expect = 6.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 153 KIPTLREAVAECLNHNLTIFF--DVKGHAHKATEALKKMY 190
K P E+ + + N T+ F DVK + H+ +A+KK+Y
Sbjct: 78 KFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLY 117
>gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo
sapiens]
Length = 152
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 148 DFPDEKIPTLREAVAECLNHNLTIFF--DVKGHAHKATEALKKMY 190
D+ K P E+ + N T+ F DVK H+ +A+KK+Y
Sbjct: 63 DYAIIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLY 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,054,894
Number of Sequences: 37866
Number of extensions: 577678
Number of successful extensions: 1463
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 28
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.