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Search of human proteins with 7706567
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706567 guanine nucleotide binding protein (G protein),
gamma 13 [Homo sapiens]
(67 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706567 guanine nucleotide binding protein (G protein), gamma... 144 1e-35
gi|4758448 guanine nucleotide binding protein gamma 11 precursor... 44 3e-05
gi|14589849 guanine nucleotide binding protein-gamma transducing... 38 0.002
gi|148922937 guanine nucleotide binding protein (G protein), gam... 38 0.002
gi|148922892 guanine nucleotide binding protein (G protein), gam... 38 0.002
gi|4758450 guanine nucleotide binding protein (G protein), gamma... 38 0.002
gi|32698769 guanine nucleotide binding protein (G protein), gamm... 36 0.006
gi|11386179 guanine nucleotide binding protein (G protein), gamm... 36 0.008
gi|51036603 G-protein gamma-12 subunit [Homo sapiens] 35 0.010
gi|54114974 guanine nucleotide binding protein (G protein), gamm... 35 0.010
gi|15147246 guanine nucleotide binding protein (G protein), gamm... 33 0.049
gi|6912394 guanine nucleotide binding protein (G protein), gamma... 33 0.064
gi|5730102 transient receptor potential cation channel, subfamil... 28 1.2
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 28 1.2
gi|239750840 PREDICTED: hypothetical protein XP_002347578 [Homo ... 28 1.6
gi|239745202 PREDICTED: hypothetical protein XP_002343408 [Homo ... 28 1.6
gi|4885287 guanine nucleotide binding protein (G protein), gamma... 28 1.6
gi|14249342 internexin neuronal intermediate filament protein, a... 27 4.6
gi|56549662 salivary amylase alpha 1B precursor [Homo sapiens] 27 4.6
gi|56549660 salivary amylase alpha 1A precursor [Homo sapiens] 27 4.6
gi|40254482 salivary amylase alpha 1A precursor [Homo sapiens] 27 4.6
gi|56549664 salivary amylase alpha 1C precursor [Homo sapiens] 27 4.6
gi|63055067 guanine nucleotide binding protein (G protein), gamm... 27 4.6
gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens] 26 7.8
>gi|7706567 guanine nucleotide binding protein (G protein), gamma
13 [Homo sapiens]
Length = 67
Score = 144 bits (364), Expect = 1e-35
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MEEWDVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVE 60
MEEWDVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVE
Sbjct: 1 MEEWDVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVE 60
Query: 61 KGKCTIL 67
KGKCTIL
Sbjct: 61 KGKCTIL 67
>gi|4758448 guanine nucleotide binding protein gamma 11 precursor
[Homo sapiens]
Length = 73
Score = 43.9 bits (102), Expect = 3e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 5 DVPQ---MKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEK 61
D+P+ +K EVE L+ ++ QR+ SK E+ +IE+ +DP + NP+ EK
Sbjct: 8 DLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPEDKNPFKEK 67
Query: 62 GKCTI 66
G C I
Sbjct: 68 GSCVI 72
>gi|14589849 guanine nucleotide binding protein-gamma transducing
activity polypeptide 2 [Homo sapiens]
Length = 69
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 9 MKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKGKCTI 66
+K EVE LK ++ R SK E+ +++E DPFL NP+ EKG C I
Sbjct: 11 LKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPFKEKGGCLI 68
>gi|148922937 guanine nucleotide binding protein (G protein),
gamma 4 [Homo sapiens]
Length = 75
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 6 VPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKG-KC 64
+ Q +K VE LK + R S+ +LL + E + +DP + P NP+ EK C
Sbjct: 13 ISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPASENPFREKKFFC 72
Query: 65 TIL 67
TIL
Sbjct: 73 TIL 75
>gi|148922892 guanine nucleotide binding protein (G protein),
gamma 4 [Homo sapiens]
Length = 75
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 6 VPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKG-KC 64
+ Q +K VE LK + R S+ +LL + E + +DP + P NP+ EK C
Sbjct: 13 ISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPASENPFREKKFFC 72
Query: 65 TIL 67
TIL
Sbjct: 73 TIL 75
>gi|4758450 guanine nucleotide binding protein (G protein), gamma
4 [Homo sapiens]
Length = 75
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 6 VPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKG-KC 64
+ Q +K VE LK + R S+ +LL + E + +DP + P NP+ EK C
Sbjct: 13 ISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPASENPFREKKFFC 72
Query: 65 TIL 67
TIL
Sbjct: 73 TIL 75
>gi|32698769 guanine nucleotide binding protein (G protein), gamma
7 [Homo sapiens]
Length = 68
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 5 DVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKGKC 64
++ Q +K VE L+ + +R SK +L+ + E DP L NP+ +K C
Sbjct: 6 NIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFKDKKPC 65
Query: 65 TIL 67
IL
Sbjct: 66 IIL 68
>gi|11386179 guanine nucleotide binding protein (G protein), gamma
transducing activity polypeptide 1 [Homo sapiens]
Length = 74
Score = 35.8 bits (81), Expect = 0.008
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 QMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVE-KGKCTI 66
++K EV+ LK ++ +R + SK E+ ++E+ +DP + NP+ E KG C I
Sbjct: 14 KLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPEDKNPFKELKGGCVI 73
>gi|51036603 G-protein gamma-12 subunit [Homo sapiens]
Length = 72
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 5 DVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKGKC 64
++ Q ++ V+ L+ + + +R SK +L+ + E+ DP L NP+ +K C
Sbjct: 10 NIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSENPFKDKKTC 69
Query: 65 TIL 67
IL
Sbjct: 70 IIL 72
>gi|54114974 guanine nucleotide binding protein (G protein), gamma
2 [Homo sapiens]
Length = 71
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 6 VPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEK 61
+ Q +K VE LK + R SK +L+ + E +DP L P NP+ EK
Sbjct: 9 IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREK 64
>gi|15147246 guanine nucleotide binding protein (G protein), gamma
8 [Homo sapiens]
Length = 70
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 6 VPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEK 61
+ + +K VE LK ++ R S+ ELL + E DP + P NP+ +K
Sbjct: 8 IAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENPFRDK 63
>gi|6912394 guanine nucleotide binding protein (G protein), gamma
3 [Homo sapiens]
Length = 75
Score = 32.7 bits (73), Expect = 0.064
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 6 VPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEK 61
+ Q +K VE LK + + R SK +L+ + + +DP + P NP+ EK
Sbjct: 13 IGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPTSENPFREK 68
>gi|5730102 transient receptor potential cation channel, subfamily
C, member 6 [Homo sapiens]
Length = 931
Score = 28.5 bits (62), Expect = 1.2
Identities = 9/46 (19%), Positives = 30/46 (65%)
Query: 1 MEEWDVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDP 46
+ E ++ ++K+++ SL+Y+L ++ ++ + EL++ + + + +P
Sbjct: 879 VNEGELKEIKQDISSLRYELLEEKSQNTEDLAELIRELGEKLSMEP 924
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 3 EWDVPQMKKEVESLKYQLAFQREMASKTIPELLKWIED 40
+W+V Q ++E++SLK QL + K + L + +++
Sbjct: 1290 KWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQN 1327
>gi|239750840 PREDICTED: hypothetical protein XP_002347578 [Homo
sapiens]
Length = 68
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 13 VESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKGKCTIL 67
VE LK + +R S+ EL ++ KD L L +NP+ E C +L
Sbjct: 14 VEQLKLEAGVERINVSQAAAELQQYCMQNACKDALLVGVLAGSNPFWEPRSCALL 68
>gi|239745202 PREDICTED: hypothetical protein XP_002343408 [Homo
sapiens]
Length = 68
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 13 VESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKGKCTIL 67
VE LK + +R S+ EL ++ KD L L +NP+ E C +L
Sbjct: 14 VEQLKLEAGVERINVSQAAAELQQYCMQNACKDALLVGVLAGSNPFWEPRSCALL 68
>gi|4885287 guanine nucleotide binding protein (G protein), gamma
5 [Homo sapiens]
Length = 68
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 6 VPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKGKCT 65
V MKK V+ L+ + R S+ +L ++ DP L NP+ + C+
Sbjct: 7 VAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFRPQKVCS 66
Query: 66 IL 67
L
Sbjct: 67 FL 68
>gi|14249342 internexin neuronal intermediate filament protein,
alpha [Homo sapiens]
Length = 499
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 9 MKKEVESLKYQLAFQREMASKTIPELLKWIE 39
++K+VESL +LAF R++ + + ELL ++
Sbjct: 213 LEKKVESLLDELAFVRQVHDEEVAELLATLQ 243
>gi|56549662 salivary amylase alpha 1B precursor [Homo sapiens]
Length = 511
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 4 WDVPQMKKEVE-SLKYQLAFQREMASKTIPELLK-------WI----EDGIPKDPFLNPD 51
WD K V L + F R M+S P + W+ ++G+ K+ +NPD
Sbjct: 331 WDARLYKMAVGFMLAHPYGFTRVMSSYRWPRYFENGKDVNDWVGPPNDNGVTKEVTINPD 390
Query: 52 LMKNNPWV 59
N WV
Sbjct: 391 TTCGNDWV 398
>gi|56549660 salivary amylase alpha 1A precursor [Homo sapiens]
Length = 511
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 4 WDVPQMKKEVE-SLKYQLAFQREMASKTIPELLK-------WI----EDGIPKDPFLNPD 51
WD K V L + F R M+S P + W+ ++G+ K+ +NPD
Sbjct: 331 WDARLYKMAVGFMLAHPYGFTRVMSSYRWPRYFENGKDVNDWVGPPNDNGVTKEVTINPD 390
Query: 52 LMKNNPWV 59
N WV
Sbjct: 391 TTCGNDWV 398
>gi|40254482 salivary amylase alpha 1A precursor [Homo sapiens]
Length = 511
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 4 WDVPQMKKEVE-SLKYQLAFQREMASKTIPELLK-------WI----EDGIPKDPFLNPD 51
WD K V L + F R M+S P + W+ ++G+ K+ +NPD
Sbjct: 331 WDARLYKMAVGFMLAHPYGFTRVMSSYRWPRYFENGKDVNDWVGPPNDNGVTKEVTINPD 390
Query: 52 LMKNNPWV 59
N WV
Sbjct: 391 TTCGNDWV 398
>gi|56549664 salivary amylase alpha 1C precursor [Homo sapiens]
Length = 511
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 4 WDVPQMKKEVE-SLKYQLAFQREMASKTIPELLK-------WI----EDGIPKDPFLNPD 51
WD K V L + F R M+S P + W+ ++G+ K+ +NPD
Sbjct: 331 WDARLYKMAVGFMLAHPYGFTRVMSSYRWPRYFENGKDVNDWVGPPNDNGVTKEVTINPD 390
Query: 52 LMKNNPWV 59
N WV
Sbjct: 391 TTCGNDWV 398
>gi|63055067 guanine nucleotide binding protein (G protein), gamma
10 [Homo sapiens]
Length = 68
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 9 MKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVEKGKCTIL 67
+++ VE LK + +R S+ EL ++ KD L +NP+ E C +L
Sbjct: 10 LQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFREPRSCALL 68
>gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens]
Length = 4523
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 31 IPE-LLKWIEDGIPKDPFLNPDLMKNNPWVEKGKC 64
IPE LK + + KDP NP+L++ + G C
Sbjct: 3270 IPENCLKVVNEHYLKDPEFNPNLIRTKSFAAAGLC 3304
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,793,425
Number of Sequences: 37866
Number of extensions: 96400
Number of successful extensions: 357
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 24
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.