Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 14028875

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14028875 solute carrier family 35 (UDP-glucuronic
acid/UDP-N-acetylgalactosamine dual transporter), member D1 [Homo
sapiens]
         (355 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14028875 solute carrier family 35 (UDP-glucuronic acid/UDP-N-...   696   0.0  
gi|223029426 solute carrier family 35, member D2 [Homo sapiens]       375   e-104
gi|56912198 solute carrier family 35, member D3 [Homo sapiens]         89   8e-18
gi|223671915 GDP-fucose transporter 1 isoform a [Homo sapiens]         65   1e-10
gi|223671919 GDP-fucose transporter 1 isoform b [Homo sapiens]         65   1e-10
gi|223671917 GDP-fucose transporter 1 isoform b [Homo sapiens]         65   1e-10
gi|56699411 solute carrier family 35, member E2 [Homo sapiens]         58   1e-08
gi|164607128 solute carrier family 35, member E1 [Homo sapiens]        49   5e-06
gi|27881499 solute carrier family 35, member C2 isoform a [Homo ...    42   8e-04
gi|21314776 solute carrier family 35, member C2 isoform a [Homo ...    42   8e-04
gi|47827222 solute carrier family 35, member E4 [Homo sapiens]         34   0.23 
gi|14249528 solute carrier family 35, member B4 [Homo sapiens]         33   0.30 
gi|8923657 solute carrier family 35, member A5 [Homo sapiens]          33   0.51 
gi|4506527 rhodopsin [Homo sapiens]                                    29   5.6  
gi|53828736 olfactory receptor, family 4, subfamily K, member 15...    29   7.3  
gi|6912668 solute carrier family 35 member 3A [Homo sapiens]           29   7.3  
gi|52317263 olfactory receptor, family 4, subfamily N, member 2 ...    28   9.6  

>gi|14028875 solute carrier family 35 (UDP-glucuronic
           acid/UDP-N-acetylgalactosamine dual transporter), member
           D1 [Homo sapiens]
          Length = 355

 Score =  696 bits (1796), Expect = 0.0
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MAEVHRRQHARVKGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVN 60
           MAEVHRRQHARVKGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVN
Sbjct: 1   MAEVHRRQHARVKGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVN 60

Query: 61  KSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRKTFPLPLLYFGNQ 120
           KSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRKTFPLPLLYFGNQ
Sbjct: 61  KSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRKTFPLPLLYFGNQ 120

Query: 121 ITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSD 180
           ITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSD
Sbjct: 121 ITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSD 180

Query: 181 LAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTGD 240
           LAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTGD
Sbjct: 181 LAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTGD 240

Query: 241 AQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIG 300
           AQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIG
Sbjct: 241 AQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIG 300

Query: 301 MVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSEANNKLDIKGKGAV 355
           MVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSEANNKLDIKGKGAV
Sbjct: 301 MVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSEANNKLDIKGKGAV 355


>gi|223029426 solute carrier family 35, member D2 [Homo sapiens]
          Length = 337

 Score =  375 bits (962), Expect = e-104
 Identities = 179/310 (57%), Positives = 238/310 (76%), Gaps = 1/310 (0%)

Query: 42  KLLAAGFYGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDL 101
           +LL+A FYG  SFLIV+VNK++LT Y FPS + +G+GQM AT+ +L+V K  +++ FPD 
Sbjct: 27  RLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFLGIGQMAATIMILYVSKLNKIIHFPDF 86

Query: 102 DRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWG 161
           D+ +P K FPLPLLY GN I+GL ST KL+LPMFTVLR+F+I  T+  E ++L K +S  
Sbjct: 87  DKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPLTLLLETIILGKQYSLN 146

Query: 162 IKMTVFAMIIGAFVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLY 221
           I ++VFA+I+GAF+AA SDLAF+LEGY F+ +ND+ TAANG Y KQK+D KELGKYG+L+
Sbjct: 147 IILSVFAIILGAFIAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDPKELGKYGVLF 206

Query: 222 YNALFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNS 281
           YNA FMI+PTL I+  TGD Q+A EF  W + +F+LQF LSC +GF+LMY+TVLC+ YNS
Sbjct: 207 YNACFMIIPTLIISVSTGDLQQATEFNQWKNVVFILQFLLSCFLGFLLMYSTVLCSYYNS 266

Query: 282 ALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQ- 340
           ALTT +VG IKN+ + YIG++ GGDYIF+  NF+GLNI +AG L YS++T + +   K  
Sbjct: 267 ALTTAVVGAIKNVSVAYIGILIGGDYIFSLLNFVGLNICMAGGLRYSFLTLSSQLKPKPV 326

Query: 341 SEANNKLDIK 350
            E N  LD+K
Sbjct: 327 GEENICLDLK 336


>gi|56912198 solute carrier family 35, member D3 [Homo sapiens]
          Length = 416

 Score = 88.6 bits (218), Expect = 8e-18
 Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 5/295 (1%)

Query: 49  YGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRK 108
           +GV S  + ++ K +++ Y+F     V           L + + L ++  P    ++ R 
Sbjct: 18  HGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAVPPFGLSLARS 77

Query: 109 TFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTF-SWGIKMTVF 167
              + +L        L+S + L+LPM+ V +R   L TM    ++LK    S G+   V 
Sbjct: 78  FAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVL 137

Query: 168 AMIIGAFVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFM 227
               GA +A + DL  D  GY   ++  ++ AA    +++     E G     Y  A+  
Sbjct: 138 ITTCGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAV-S 196

Query: 228 ILPTLAIAYFTG-DAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTT 286
             P L I  F   D+  A  F GW D   +  F    ++G  + + T+ CT  NSA+TT+
Sbjct: 197 ATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTTLHCTYINSAVTTS 256

Query: 287 IVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQS 341
            VG +K+I    +GMV   D   T     G+ ++  GS++Y    F E +  KQS
Sbjct: 257 FVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGSIIYCVAKFMETR--KQS 309


>gi|223671915 GDP-fucose transporter 1 isoform a [Homo sapiens]
          Length = 364

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 29/297 (9%)

Query: 44  LAAGFYGVSSFLIVVVNKSVLTN--YRFPSSLCVGLGQMVATVAVLWVGKALRV-----V 96
           L    Y V+S  +V +NK +L +   R  + + V   Q + T  +     AL       V
Sbjct: 43  LVVSLYWVTSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAV 102

Query: 97  KFPDL--DRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLL 154
            FP L  D  V R   PL +++ G         K + +  + V R  + +F +    +LL
Sbjct: 103 DFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLL 162

Query: 155 KKTFSWGIKMTVFAMIIGAFVAASSDLA---FDLEGYAFILINDVLTAANGAYVKQKLDS 211
           K+T S+   +T   +I G ++    + A       G  F ++  +  + N  Y  + L +
Sbjct: 163 KQTTSFYALLTCGIIIGGFWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPA 222

Query: 212 KELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMY 271
            +   + L +YN +   +  L +    G+ Q   +F       F    TL  + GF + Y
Sbjct: 223 VDGSIWRLTFYNNVNACILFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGY 282

Query: 272 ATVLCTQYNSALTTTIVGCIKNILITYIG-----------------MVFGGDYIFTW 311
            T L  ++ S LT  + G  K    T +                  MV GG   +TW
Sbjct: 283 VTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTW 339


>gi|223671919 GDP-fucose transporter 1 isoform b [Homo sapiens]
          Length = 351

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 29/297 (9%)

Query: 44  LAAGFYGVSSFLIVVVNKSVLTN--YRFPSSLCVGLGQMVATVAVLWVGKALRV-----V 96
           L    Y V+S  +V +NK +L +   R  + + V   Q + T  +     AL       V
Sbjct: 30  LVVSLYWVTSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAV 89

Query: 97  KFPDL--DRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLL 154
            FP L  D  V R   PL +++ G         K + +  + V R  + +F +    +LL
Sbjct: 90  DFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLL 149

Query: 155 KKTFSWGIKMTVFAMIIGAFVAASSDLA---FDLEGYAFILINDVLTAANGAYVKQKLDS 211
           K+T S+   +T   +I G ++    + A       G  F ++  +  + N  Y  + L +
Sbjct: 150 KQTTSFYALLTCGIIIGGFWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPA 209

Query: 212 KELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMY 271
            +   + L +YN +   +  L +    G+ Q   +F       F    TL  + GF + Y
Sbjct: 210 VDGSIWRLTFYNNVNACILFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGY 269

Query: 272 ATVLCTQYNSALTTTIVGCIKNILITYIG-----------------MVFGGDYIFTW 311
            T L  ++ S LT  + G  K    T +                  MV GG   +TW
Sbjct: 270 VTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTW 326


>gi|223671917 GDP-fucose transporter 1 isoform b [Homo sapiens]
          Length = 351

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 29/297 (9%)

Query: 44  LAAGFYGVSSFLIVVVNKSVLTN--YRFPSSLCVGLGQMVATVAVLWVGKALRV-----V 96
           L    Y V+S  +V +NK +L +   R  + + V   Q + T  +     AL       V
Sbjct: 30  LVVSLYWVTSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAV 89

Query: 97  KFPDL--DRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLL 154
            FP L  D  V R   PL +++ G         K + +  + V R  + +F +    +LL
Sbjct: 90  DFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLL 149

Query: 155 KKTFSWGIKMTVFAMIIGAFVAASSDLA---FDLEGYAFILINDVLTAANGAYVKQKLDS 211
           K+T S+   +T   +I G ++    + A       G  F ++  +  + N  Y  + L +
Sbjct: 150 KQTTSFYALLTCGIIIGGFWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPA 209

Query: 212 KELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMY 271
            +   + L +YN +   +  L +    G+ Q   +F       F    TL  + GF + Y
Sbjct: 210 VDGSIWRLTFYNNVNACILFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGY 269

Query: 272 ATVLCTQYNSALTTTIVGCIKNILITYIG-----------------MVFGGDYIFTW 311
            T L  ++ S LT  + G  K    T +                  MV GG   +TW
Sbjct: 270 VTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTW 326


>gi|56699411 solute carrier family 35, member E2 [Homo sapiens]
          Length = 313

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 65/303 (21%), Positives = 133/303 (43%), Gaps = 9/303 (2%)

Query: 44  LAAG--FYGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDL 101
           +AAG  F  + S  IV +NK +   + FP+ + + L   V T   L++ + L +     L
Sbjct: 14  IAAGLLFNLLVSICIVFLNKWIYVYHGFPN-MSLTLVHFVVTWLGLYICQKLDIFAPKSL 72

Query: 102 DRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWG 161
               P +   L L + G  +    S +   +  + + +  +    +  +    +KTFS  
Sbjct: 73  P---PSRLLLLALSFCGFVVFTNLSLQNNTIGTYQLAKAMTTPVIIAIQTFCYQKTFSTR 129

Query: 162 IKMTVFAMIIGAFVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLY 221
           I++T+  + +G  + +  D+ F+  G  F  +  ++T+    +V  K    ++    LLY
Sbjct: 130 IQLTLIPITLGVILNSYYDVKFNFLGMVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLY 189

Query: 222 YNA-LFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYN 280
           Y A +   +  +A+ +F     +   F  W+ +  LL   LS V+ F++  +        
Sbjct: 190 YQAPMSSAMLLVAVPFFEPVFGEGGIFGPWSVSA-LLMVLLSGVIAFMVNLSIYWIIGNT 248

Query: 281 SALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQ 340
           S +T  + G  K  +  + G V   D + +    +G+  ++ G L Y++   +E++ S+ 
Sbjct: 249 SPVTYNMFGHFKFCITLFGGYVLFKDPL-SINQALGILCTLFGILAYTHFKLSEQEGSRS 307

Query: 341 SEA 343
             A
Sbjct: 308 KLA 310


>gi|164607128 solute carrier family 35, member E1 [Homo sapiens]
          Length = 410

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 62/313 (19%), Positives = 134/313 (42%), Gaps = 43/313 (13%)

Query: 58  VVNKSVLTNYRFPSS--------LCVGLGQMVATVAVLWVGKALRVVKFPDLD------- 102
           VVNK +L+ + FP +        LC GL  ++         +A RV   P +        
Sbjct: 46  VVNKVILSAFPFPVTVSLCHILALCAGLPPLL---------RAWRVPPAPPVSGPGPSPH 96

Query: 103 ---------RNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVL 153
                    R  PR   PL    +   ++   S  K+ +     ++    ++ +    ++
Sbjct: 97  PSSGPLLPPRFYPRYVLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRII 156

Query: 154 LKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKL-DSK 212
           +K+  S  + +++  +I G  +A  ++L+FD+ G    L   +  +    + K+ L DS+
Sbjct: 157 MKEKQSTKVYLSLIPIISGVLLATVTELSFDMWGLVSALAATLCFSLQNIFSKKVLRDSR 216

Query: 213 --ELGKYGLLYYNALFMILPT---LAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGF 267
              L    +L  +A+F ++PT   + ++ F   +     ++ W  TL LL  +  C    
Sbjct: 217 IHHLRLLNILGCHAVFFMIPTWVLVDLSAFLVSSDLTYVYQ-WPWTLLLLAVSGFCNFAQ 275

Query: 268 ILMYATVLCTQYNSALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVY 327
            ++  ++L     S L+ ++    K I++  + ++   + + T TN +G+  +I G  +Y
Sbjct: 276 NVIAFSIL--NLVSPLSYSVANATKRIMVITVSLIMLRNPV-TSTNVLGMMTAILGVFLY 332

Query: 328 SYITFTEEQLSKQ 340
           +   +   Q +++
Sbjct: 333 NKTKYDANQQARK 345


>gi|27881499 solute carrier family 35, member C2 isoform a [Homo
           sapiens]
          Length = 365

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 20/208 (9%)

Query: 130 LNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLEGYA 189
           + + ++T+ +  ++LF +    +   +     + + V  +  G F+       F++EG+A
Sbjct: 108 VTVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFA 167

Query: 190 FILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYF----------TG 239
            +L    +        +  L   ELG    +  + +F + P + +  F            
Sbjct: 168 LVLGASFIGGIRWTLTQMLLQKAELGLQNPI--DTMFHLQPLMFLGLFPLFAVFEGLHLS 225

Query: 240 DAQKAVEFEGWADTLFLLQFTLSCVMGFILM----YATVLCTQYNSALTTTIVGCIKNIL 295
            ++K   F+   DT  LL+   S  +G IL     ++  L     S+LT +I G  K + 
Sbjct: 226 TSEKIFRFQ---DTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVC 282

Query: 296 ITYIGMVFGGDYIFTWTNFIGLNISIAG 323
              +     GD I +  N++G  + ++G
Sbjct: 283 TLLLAAHLLGDQI-SLLNWLGFALCLSG 309


>gi|21314776 solute carrier family 35, member C2 isoform a [Homo
           sapiens]
          Length = 365

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 20/208 (9%)

Query: 130 LNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLEGYA 189
           + + ++T+ +  ++LF +    +   +     + + V  +  G F+       F++EG+A
Sbjct: 108 VTVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFA 167

Query: 190 FILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYF----------TG 239
            +L    +        +  L   ELG    +  + +F + P + +  F            
Sbjct: 168 LVLGASFIGGIRWTLTQMLLQKAELGLQNPI--DTMFHLQPLMFLGLFPLFAVFEGLHLS 225

Query: 240 DAQKAVEFEGWADTLFLLQFTLSCVMGFILM----YATVLCTQYNSALTTTIVGCIKNIL 295
            ++K   F+   DT  LL+   S  +G IL     ++  L     S+LT +I G  K + 
Sbjct: 226 TSEKIFRFQ---DTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVC 282

Query: 296 ITYIGMVFGGDYIFTWTNFIGLNISIAG 323
              +     GD I +  N++G  + ++G
Sbjct: 283 TLLLAAHLLGDQI-SLLNWLGFALCLSG 309


>gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
          Length = 350

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 46/226 (20%), Positives = 91/226 (40%), Gaps = 18/226 (7%)

Query: 115 LYFGNQIT-GLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGA 173
           L FG  +  G    + + L +  ++   + LFT+    +LL +         +  + +GA
Sbjct: 115 LTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGA 174

Query: 174 FVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNAL--FMILPT 231
             + + +      G  F+L    L           L  + L    LLY  +L  F +L  
Sbjct: 175 ACSLAGEFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAG 234

Query: 232 LAIAYFTGDAQKAVEFEG--WADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVG 289
            A+    G A      +   WA  L      LSC++  +   A+       SALT  ++G
Sbjct: 235 AALVLEAGVAPPPTAGDSRLWACIL------LSCLLSVLYNLASFSLLALTSALTVHVLG 288

Query: 290 ---CIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITF 332
               + N++++   ++FG     +  +++G+ ++++G  +Y    F
Sbjct: 289 NLTVVGNLILS--RLLFGSR--LSALSYVGIALTLSGMFLYHNCEF 330


>gi|14249528 solute carrier family 35, member B4 [Homo sapiens]
          Length = 331

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 59/291 (20%), Positives = 119/291 (40%), Gaps = 58/291 (19%)

Query: 102 DRNVPRKTFPLPLLYFGNQITGLFSTKKLN---------LPMFTVLRRFSILFTMFAEGV 152
           + ++ RK   +P+ Y+   +T  F+   +N         +P+  + R  S++  M    +
Sbjct: 51  EADLGRKPPAIPIRYYAIMVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGII 110

Query: 153 LLKKTFSWGIKMTVFAMI-IGAF---------VAASSDLAFD---------LEGYAFILI 193
           +LKK +S   K T  A++ +G F         V + S L+ +         L G   +  
Sbjct: 111 ILKKRYSI-FKYTSIALVSVGIFICTFMSAKQVTSQSSLSENDGFQAFVWWLLGIGALTF 169

Query: 194 NDVLTAANGAYVKQKLDSKELGKYG--LLYYNALFMILPTLAIAYFTGD---------AQ 242
             +++A  G +  Q+   K  GK+    L+YN     LP     +   D           
Sbjct: 170 ALLMSARMGIF--QETLYKRFGKHSKEALFYN---HALPLPGFVFLASDIYDHAVLFNKS 224

Query: 243 KAVEFEGWADTLFLLQFTL--SCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIG 300
           +  E      TL ++ F L  + +  ++ +    + T   ++LT T+V  ++     ++ 
Sbjct: 225 ELYEIPVIGVTLPIMWFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRK----FVS 280

Query: 301 MVFGGDYI---FTWTNFIGLNISIAGSLVYSYI----TFTEEQLSKQSEAN 344
           ++F   Y    FT  +++G      G+L+Y+ +      T+ +  K S+ N
Sbjct: 281 LIFSILYFQNPFTLWHWLGTLFVFIGTLMYTEVWNNLGTTKSEPQKDSKKN 331


>gi|8923657 solute carrier family 35, member A5 [Homo sapiens]
          Length = 424

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 24/171 (14%)

Query: 38  TVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPS-----SLCVGLGQMVATVAVLWVGKA 92
           T++  LL A F  +SS  I++V  S     ++       ++C  L ++V  V V +    
Sbjct: 16  TMYTFLLGAIFIALSSSRILLVKYSANEENKYDYLPTTVNVCSELVKLVFCVLVSFC--- 72

Query: 93  LRVVKFPDLDRNVPRKTFP---------LP-LLYFGNQITGLFSTKKLNLPMFTVLRRFS 142
             V+K     RN+   ++          +P  LYF + +   +    L   M  +   FS
Sbjct: 73  --VIKKDHQSRNLKYASWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFS 130

Query: 143 ILFTMFAEGVLLKKTFS---WGIKMTVFAMIIGAFVAASSDLAFDLEGYAF 190
           I+ T     ++LK+  +   W   +T+F  I+ A  A +  L  +L G  F
Sbjct: 131 IITTALLFRIVLKRRLNWIQWASLLTLFLSIV-ALTAGTKTLQHNLAGRGF 180


>gi|4506527 rhodopsin [Homo sapiens]
          Length = 348

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 248 EGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIGMVFGGDY 307
           E W  ++      L  V+GF + + T+  T  +  L T +   + N+ +  + MV GG  
Sbjct: 33  EPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGG-- 90

Query: 308 IFTWTNFIGLN 318
            FT T +  L+
Sbjct: 91  -FTSTLYTSLH 100


>gi|53828736 olfactory receptor, family 4, subfamily K, member 15
           [Homo sapiens]
          Length = 348

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 31  MASAETLTVFLKLLA-AGFYGVSSFLIVVVNKSVL---TNYRFPSSLCVGLGQMVA--TV 84
           +A  +T  V L ++A +GF  +SSFL++VV+ +V+      R  +S+      + A  TV
Sbjct: 211 LACIDTYVVSLLIVADSGFLSLSSFLLLVVSYTVILVTVRNRSSASMAKARSTLTAHITV 270

Query: 85  AVLWVGKALRVVKFP 99
             L+ G  + +  +P
Sbjct: 271 VTLFFGPCIFIYVWP 285


>gi|6912668 solute carrier family 35 member 3A [Homo sapiens]
          Length = 325

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 29/218 (13%)

Query: 130 LNLPMFTVLRRFSILFT-MFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLE-- 186
           L+   + V  +  IL T +F+  +L KK   +     V  M   AFV   SD   D +  
Sbjct: 108 LDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKEL 167

Query: 187 --GYAFILINDVLTAA-----NGAY----VKQKLDSKELGKYGLLYYNALFMILPTLAIA 235
             G  F+ +  VLTA       G Y    +K+   S  +    L ++ ++F ++    + 
Sbjct: 168 SAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLM---GVY 224

Query: 236 YFTGD-AQKAVEFEGWADTLFL---LQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCI 291
            + G+   K   F+G+    ++   LQ     V+  ++ YA  +   + ++L+       
Sbjct: 225 IYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSI------ 278

Query: 292 KNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSY 329
             IL T I   +  D++ T   F+G  + I  + +Y Y
Sbjct: 279 --ILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGY 314


>gi|52317263 olfactory receptor, family 4, subfamily N, member 2
           [Homo sapiens]
          Length = 307

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 260 TLSCVMGFILMYATVLCT---QYNSALTTTIVGCIKNILITYIGMVFG-GDYIFT 310
           TL C +G +  YA +LC      + A    +  CI +I++ +   +FG G +I+T
Sbjct: 207 TLLCFLGLLASYAVILCRIRGSSSEAKNKAMSTCITHIIVIF--FMFGPGIFIYT 259


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,801,288
Number of Sequences: 37866
Number of extensions: 401098
Number of successful extensions: 1137
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 18
length of query: 355
length of database: 18,247,518
effective HSP length: 103
effective length of query: 252
effective length of database: 14,347,320
effective search space: 3615524640
effective search space used: 3615524640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press