Search of human proteins with 7661824

Search of human proteins with 7661824

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7661824 cornichon homolog 4 [Homo sapiens]
         (139 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7661824 cornichon homolog 4 [Homo sapiens]                         288   8e-79
gi|5031639 cornichon-like [Homo sapiens]                               98   2e-21
gi|22749039 cornichon homolog 3 [Homo sapiens]                         84   5e-17
gi|32698938 cornichon homolog 2 [Homo sapiens]                         79   9e-16
gi|15618997 glutathione peroxidase 7 [Homo sapiens]                    29   1.4  
gi|4504957 lysosomal-associated membrane protein 2 isoform A pre...    27   5.4  
gi|47131207 solute carrier family 26, member 1 isoform a [Homo s...    27   5.4  
gi|20336272 solute carrier family 26, member 1 isoform a [Homo s...    27   5.4  
gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]                   27   7.0  
gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]                 27   7.0  
gi|69885149 Fc receptor-like and mucin-like 1 [Homo sapiens]           27   7.0  
gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartat...    26   9.1  
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ...    26   9.1  
gi|126116565 MYC binding protein 2 [Homo sapiens]                      26   9.1  

>gi|7661824 cornichon homolog 4 [Homo sapiens]
          Length = 139

 Score =  288 bits (738), Expect = 8e-79
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MEAVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTV 60
           MEAVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTV
Sbjct: 1   MEAVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTV 60

Query: 61  LLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGF 120
           LLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGF
Sbjct: 61  LLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGF 120

Query: 121 HLLCFFMYLYSMILALIND 139
           HLLCFFMYLYSMILALIND
Sbjct: 121 HLLCFFMYLYSMILALIND 139


>gi|5031639 cornichon-like [Homo sapiens]
          Length = 144

 Score = 98.2 bits (243), Expect = 2e-21
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 1/137 (0%)

Query: 3   AVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLL 62
           A  ++ +LL   ALIF +++ II   +L+ DY N    C+ LN  V+PE + H    V+ 
Sbjct: 7   AFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMF 66

Query: 63  LMSLHWFIFLLNLPVATWNIYRYIMVP-SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFH 121
           L +  W    LN+P+  ++I+RY+  P     G++DPT I N   L    KE   KL F+
Sbjct: 67  LCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFY 126

Query: 122 LLCFFMYLYSMILALIN 138
           LL FF YLY MI  L++
Sbjct: 127 LLAFFYYLYGMIYVLVS 143


>gi|22749039 cornichon homolog 3 [Homo sapiens]
          Length = 160

 Score = 83.6 bits (205), Expect = 5e-17
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 17/153 (11%)

Query: 3   AVVFVFSLLDCCALIFLSVYFIITLSDL---------ECDYINARS-------CCSKLNK 46
           A  ++ SL+ C ALIF +++ II   +L         +C+ ++AR         C  L K
Sbjct: 7   AFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRK 66

Query: 47  WVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGV-FDPTEIHNRG 105
            V+PE   H++  ++ L +  W    LN+P+  ++ +RY   P+ +  + +DP  + N  
Sbjct: 67  LVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNAD 126

Query: 106 QLKSHMKEAMIKLGFHLLCFFMYLYSMILALIN 138
            L    KEA  KL F+LL FF YLY MI  L++
Sbjct: 127 TLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVS 159


>gi|32698938 cornichon homolog 2 [Homo sapiens]
          Length = 160

 Score = 79.3 bits (194), Expect = 9e-16
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 19/154 (12%)

Query: 3   AVVFVFSLLDCCALIFLSVYFIITLSDLECDYINA-----------------RSCCSKLN 45
           A  ++ +L+ C +LIF  ++ II   +L  D+ N                  R CC  L 
Sbjct: 7   AFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCL-LR 65

Query: 46  KWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPS-GNMGVFDPTEIHNR 104
           K V+PE   H +  ++ L +  W    LN+P+  ++++RY   P+ G+  ++D   I N 
Sbjct: 66  KLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNA 125

Query: 105 GQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIN 138
             L    KE+  KL F+LL FF YLYSM+  L++
Sbjct: 126 DILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159


>gi|15618997 glutathione peroxidase 7 [Homo sapiens]
          Length = 187

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 79  TWNIYRYIMVPSGN-MGVFDPT 99
           TWN ++Y++ P G  +G +DPT
Sbjct: 141 TWNFWKYLVAPDGKVVGAWDPT 162


>gi|4504957 lysosomal-associated membrane protein 2 isoform A
           precursor [Homo sapiens]
          Length = 410

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 34  YINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFL 72
           Y  A+ C +  + +++P  +G  +  VL+L+ L +FI L
Sbjct: 362 YSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGL 400


>gi|47131207 solute carrier family 26, member 1 isoform a [Homo
           sapiens]
          Length = 701

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 10  LLDCCALIFLSVYFIITLSDLECDY 34
           ++DC  L+FL    + TL DL  DY
Sbjct: 613 VIDCAPLLFLDAAGVSTLQDLRRDY 637


>gi|20336272 solute carrier family 26, member 1 isoform a [Homo
           sapiens]
          Length = 701

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 10  LLDCCALIFLSVYFIITLSDLECDY 34
           ++DC  L+FL    + TL DL  DY
Sbjct: 613 VIDCAPLLFLDAAGVSTLQDLRRDY 637


>gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]
          Length = 467

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 15  ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLN 74
           A I +SV  ++T+  +    +    C   ++ W+I        ++ LLL+    FI+L  
Sbjct: 136 AAIMISVIVVMTILLV---VLYKYRCYKVIHAWLI--------ISSLLLLFFFSFIYLGE 184

Query: 75  LPVATWNI---YRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYS 131
           +   T+N+   Y  + +   N GV     IH +G L+      ++      L F  YL  
Sbjct: 185 V-FKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPE 243

Query: 132 ----MILALIN 138
               +ILA+I+
Sbjct: 244 WTAWLILAVIS 254


>gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]
          Length = 463

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 15  ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLN 74
           A I +SV  ++T+  +    +    C   ++ W+I        ++ LLL+    FI+L  
Sbjct: 132 AAIMISVIVVMTILLV---VLYKYRCYKVIHAWLI--------ISSLLLLFFFSFIYLGE 180

Query: 75  LPVATWNI---YRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYS 131
           +   T+N+   Y  + +   N GV     IH +G L+      ++      L F  YL  
Sbjct: 181 V-FKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPE 239

Query: 132 ----MILALIN 138
               +ILA+I+
Sbjct: 240 WTAWLILAVIS 250


>gi|69885149 Fc receptor-like and mucin-like 1 [Homo sapiens]
          Length = 376

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 90  SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLL 123
           S  +G+ DP   H  G L  HM++  + LG HLL
Sbjct: 324 SSPLGMPDPHLYHQMGLLLKHMQDVRVLLG-HLL 356


>gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartate
           3A [Homo sapiens]
          Length = 1115

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 58  VTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGN 92
           VTV +L   +W+ F L L    WNI  ++++   N
Sbjct: 252 VTVSILTMNNWYNFSLLLCQEDWNITDFLLLTQNN 286


>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
            sapiens]
          Length = 1998

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 10/81 (12%)

Query: 16   LIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNL 75
            LI L++  ++  +D + +Y+   +  S++N   I    G     VL L+SL  + F +  
Sbjct: 1539 LICLNMVTMMVETDDQSEYVT--TILSRINLVFIVLFTGEC---VLKLISLRHYYFTIG- 1592

Query: 76   PVATWNIYRYIMVPSGNMGVF 96
                WNI+ +++V    +G+F
Sbjct: 1593 ----WNIFDFVVVILSIVGMF 1609


>gi|126116565 MYC binding protein 2 [Homo sapiens]
          Length = 4640

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 12   DCCALIFLSVYFIITLSDLECDYINARSCCSKL--NKWVIPEL 52
            D C + F           L+C +I    CC ++  N+W+ P +
Sbjct: 4388 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRI 4430


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.334    0.146    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,854,204
Number of Sequences: 37866
Number of extensions: 193659
Number of successful extensions: 593
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 14
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.