Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CNIH4 Sequence: fasta or formatted (139aa) NCBI GI: 7661824
Description:

cornichon homolog 4

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          6           1
 C cysteine            4.3          6           2
 D aspartate           3.6          5           1
 E glutamate           3.6          5           1
 F phenylalanine       7.2         10           2
 G glycine             3.6          5           1
 H histidine           3.6          5           1
 I isoleucine         10.1         14           2
 K lysine              3.6          5           1
 L leucine            15.8         22           3
 M methionine          5.8          8           1
 N asparagine          5.0          7           1
 P proline             2.9          4           1
 Q glutamine           0.7          1           1
 R arginine            2.2          3           1
 S serine              6.5          9           1
 T threonine           3.6          5           1
 V valine              7.2         10           2
 W tryptophan          2.2          3           1
 Y tyrosine            4.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cornichon homolog 4 
CNIH                  0.278   cornichon-like 
CNIH3                 0.224   cornichon homolog 3 
CNIH2                 0.205   cornichon homolog 2 
GPX7                  0.015   glutathione peroxidase 7 
LAMP2                 0.008   lysosomal-associated membrane protein 2 isoform A pre...
SLC26A1               0.008   solute carrier family 26, member 1 isoform a 
SLC26A1               0.008   solute carrier family 26, member 1 isoform a 
PSEN1                 0.008   presenilin 1 isoform I-467 
PSEN1                 0.008   presenilin 1 isoform I-463 
FCRLA                 0.008   Fc receptor-like and mucin-like 1 
GRIN3A                0.004   glutamate receptor, ionotropic, N-methyl-D-aspartat...
SCN1A                 0.004   sodium channel, voltage-gated, type I, alpha 
MYCBP2                0.004   MYC binding protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press