Search of human proteins with 7657369

Search of human proteins with 7657369

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7657369 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
8, 19kDa [Homo sapiens]
         (172 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7657369 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8...   373   e-104
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas...    28   3.0  
gi|148613878 acrosin precursor [Homo sapiens]                          28   3.0  
gi|63055059 SH3 and PX domains 2B [Homo sapiens]                       28   3.9  
gi|239749949 PREDICTED: hypothetical protein [Homo sapiens]            28   5.1  
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap...    28   5.1  
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap...    28   5.1  
gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2...    27   6.7  
gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1...    27   6.7  
gi|221218991 neuroblastoma breakpoint family, member 4 [Homo sap...    27   6.7  
gi|151301154 mucin 6, gastric [Homo sapiens]                           27   6.7  
gi|32698876 COX assembly mitochondrial protein homolog [Homo sap...    27   6.7  
gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens]    27   6.7  
gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens]    27   6.7  
gi|154689847 hypothetical protein LOC9851 [Homo sapiens]               27   8.7  

>gi|7657369 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8,
           19kDa [Homo sapiens]
          Length = 172

 Score =  373 bits (958), Expect = e-104
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MPGIVELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 60
           MPGIVELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG
Sbjct: 1   MPGIVELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 60

Query: 61  KLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDECVLDKLGWVRP 120
           KLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDECVLDKLGWVRP
Sbjct: 61  KLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDECVLDKLGWVRP 120

Query: 121 DLGELSKVTKVKTDRPLPENPYHSRPRPDPSPEIEGDLQPATHGSRFYFWTK 172
           DLGELSKVTKVKTDRPLPENPYHSRPRPDPSPEIEGDLQPATHGSRFYFWTK
Sbjct: 121 DLGELSKVTKVKTDRPLPENPYHSRPRPDPSPEIEGDLQPATHGSRFYFWTK 172


>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
           [Homo sapiens]
          Length = 355

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 135 RPLPENPYHSRPRPDPSP 152
           RPLP  P  ++PRP PSP
Sbjct: 267 RPLPPRPPAAQPRPPPSP 284


>gi|148613878 acrosin precursor [Homo sapiens]
          Length = 421

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 135 RPLPENPYHSRPRPDPSP 152
           RPLP  P  ++PRP PSP
Sbjct: 333 RPLPPRPPAAQPRPPPSP 350


>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
          Length = 911

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 11/42 (26%)

Query: 125 LSKVTKVKTDRP------LPENPY-----HSRPRPDPSPEIE 155
           L  ++K KTD P       P+NP+       RP+P PSP+ E
Sbjct: 612 LRPISKSKTDLPEEKPDATPQNPFLKSRPQVRPKPAPSPKTE 653


>gi|239749949 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 182

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 137 LPENPYHSRPRPDPSPEIEGDLQPATHG 164
           +P+    S PRP PS  IEG  +PA  G
Sbjct: 147 VPQETVPSWPRPVPSVAIEGPARPAVTG 174


>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
           sapiens]
          Length = 1038

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 108 DECVLDKLGWVRPDLGELSKVTKVKTDRPLPENPYHSRPRP-DPSPEIEGDLQP 160
           +E V+  L    P L +L+       D   P++P  + PRP  P+P ++ D +P
Sbjct: 575 EEPVVPALRPCAPSLAQLAMDACSLLDETPPQSPTRALPRPLHPTPVVDWDARP 628


>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
           sapiens]
          Length = 1086

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 108 DECVLDKLGWVRPDLGELSKVTKVKTDRPLPENPYHSRPRP-DPSPEIEGDLQP 160
           +E V+  L    P L +L+       D   P++P  + PRP  P+P ++ D +P
Sbjct: 653 EEPVVPALRPCAPSLAQLAMDACSLLDETPPQSPTRALPRPLHPTPVVDWDARP 706


>gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2
           [Homo sapiens]
          Length = 638

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 6   ELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKP 39
           ELP ++E +V E  ++   L  + HH  + C +P
Sbjct: 421 ELPEVKEQEVPEDSVNEVYLTPSVHHDVSDCHQP 454


>gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1
           [Homo sapiens]
          Length = 667

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 6   ELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKP 39
           ELP ++E +V E  ++   L  + HH  + C +P
Sbjct: 450 ELPEVKEQEVPEDSVNEVYLTPSVHHDVSDCHQP 483


>gi|221218991 neuroblastoma breakpoint family, member 4 [Homo
           sapiens]
          Length = 638

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 6   ELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKP 39
           ELP ++E +V E  ++   L  + HH  + C +P
Sbjct: 421 ELPEVKEQEVPEDSVNEVYLTPSVHHDVSDCHQP 454


>gi|151301154 mucin 6, gastric [Homo sapiens]
          Length = 2439

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 43  FMLCRWEEKDPRRCLEEGKLVNKCALD-----FFRQIKRHCAEPFTEYWTCIDYTGQQLF 97
           +  C +EE  P  C   G  V+ C+L       +R    +C  P T   T   Y  Q   
Sbjct: 620 YQACNYEETFPHICAALGDYVHACSLRGVLLWGWRSSVDNCTIPCTGN-TTFSYNSQACE 678

Query: 98  RHCRKQQAKFDEC 110
           R C     +  EC
Sbjct: 679 RTCLSLSDRATEC 691


>gi|32698876 COX assembly mitochondrial protein homolog [Homo
           sapiens]
          Length = 106

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 75  KRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDECV 111
           K  C+E   ++  C   +G  +   CRK+ +   EC+
Sbjct: 28  KERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECL 64


>gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens]
          Length = 247

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 54  RRCLEEGKLVNKCALDFFRQIKRHCAEPFTEY---WTCIDYTGQQLFRHCRKQQAKFDE 109
           R+ LE  + V  C +D + + +    + +  Y   +  + Y  QQL  H R +Q +F+E
Sbjct: 62  RKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEE 120


>gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens]
          Length = 413

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 54  RRCLEEGKLVNKCALDFFRQIKRHCAEPFTEY---WTCIDYTGQQLFRHCRKQQAKFDE 109
           R+ LE  + V  C +D + + +    + +  Y   +  + Y  QQL  H R +Q +F+E
Sbjct: 228 RKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEE 286


>gi|154689847 hypothetical protein LOC9851 [Homo sapiens]
          Length = 967

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 6   ELPTLEELKVDEVKISSAVLKAAAHHYGA-QCDKPNKEFMLCRWEEKDPRRCLEEGKLVN 64
           EL  L   K+   K S A+ K AA H GA +  +        R E   P RC E G L+ 
Sbjct: 282 ELDKLSPHKIKHTKKSWAMSKLAAAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIR 341

Query: 65  KCAL 68
           + +L
Sbjct: 342 QLSL 345


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,164,303
Number of Sequences: 37866
Number of extensions: 403897
Number of successful extensions: 1504
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1496
Number of HSP's gapped (non-prelim): 15
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.