Search of human proteins with 75905815

Search of human proteins with 75905815

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|75905815 glycophorin B precursor [Homo sapiens]
         (91 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|75905815 glycophorin B precursor [Homo sapiens]                    170   2e-43
gi|75813628 glycophorin A precursor [Homo sapiens]                    116   4e-27
gi|149408157 glycophorin E precursor [Homo sapiens]                    91   2e-19
gi|149408155 glycophorin E precursor [Homo sapiens]                    91   2e-19
gi|5902142 DNA polymerase sigma [Homo sapiens]                         29   0.94 
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform...    28   1.6  
gi|215272334 sodium channel, voltage-gated, type IV, beta isofor...    28   1.6  
gi|189181742 atlastin GTPase 1 isoform b [Homo sapiens]                28   1.6  
gi|74024917 atlastin GTPase 1 isoform b [Homo sapiens]                 28   1.6  
gi|19923445 atlastin GTPase 1 isoform a [Homo sapiens]                 28   1.6  
gi|4506241 platelet-activating factor receptor [Homo sapiens]          27   3.6  
gi|52317269 olfactory receptor, family 51, subfamily F, member 2...    27   3.6  
gi|4885311 lysophosphatidic acid receptor 4 [Homo sapiens]             26   6.1  
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     26   7.9  

>gi|75905815 glycophorin B precursor [Homo sapiens]
          Length = 91

 Score =  170 bits (431), Expect = 2e-43
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 60
          MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
Sbjct: 1  MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 60

Query: 61 VVIILIILCVMAGIIGTILLISYSIRRLIKA 91
          VVIILIILCVMAGIIGTILLISYSIRRLIKA
Sbjct: 61 VVIILIILCVMAGIIGTILLISYSIRRLIKA 91


>gi|75813628 glycophorin A precursor [Homo sapiens]
          Length = 150

 Score =  116 bits (290), Expect = 4e-27
 Identities = 75/122 (61%), Positives = 77/122 (63%), Gaps = 35/122 (28%)

Query: 1   MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTN--------------- 45
           MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTN               
Sbjct: 1   MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60

Query: 46  -----------------GETGQLVHRFTVPAPVVIILIILCVMAGIIGTILLISYSIRRL 88
                            GE  QL H F+ P    I LII  VMAG+IGTILLISY IRRL
Sbjct: 61  EVSEISVRTVYPPEEETGERVQLAHHFSEPE---ITLIIFGVMAGVIGTILLISYGIRRL 117

Query: 89  IK 90
           IK
Sbjct: 118 IK 119


>gi|149408157 glycophorin E precursor [Homo sapiens]
          Length = 78

 Score = 90.9 bits (224), Expect = 2e-19
 Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 8/86 (9%)

Query: 1  MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 60
          MYGKIIFVLLLS IVSISA STT VAMHTSTSSSVTKSYISSQTNG T  L++ + +   
Sbjct: 1  MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR- 57

Query: 61 VVIILIILCVMAGIIGTILLISYSIR 86
               +I  VM  ++G I+LISY IR
Sbjct: 58 -----VIFEVMLVVVGMIILISYCIR 78


>gi|149408155 glycophorin E precursor [Homo sapiens]
          Length = 78

 Score = 90.9 bits (224), Expect = 2e-19
 Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 8/86 (9%)

Query: 1  MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 60
          MYGKIIFVLLLS IVSISA STT VAMHTSTSSSVTKSYISSQTNG T  L++ + +   
Sbjct: 1  MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR- 57

Query: 61 VVIILIILCVMAGIIGTILLISYSIR 86
               +I  VM  ++G I+LISY IR
Sbjct: 58 -----VIFEVMLVVVGMIILISYCIR 78


>gi|5902142 DNA polymerase sigma [Homo sapiens]
          Length = 542

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 23  TEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAPVVIILIILCVMAGIIGTILL 80
           T + M +      T   +   TN +T     RFT+P P + +  + C  AG+ GT  L
Sbjct: 399 TALPMPSGKPQPTTSRTLIMTTNNQT-----RFTIPPPTLGVAPVPCRQAGVEGTASL 451


>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
           precursor [Homo sapiens]
          Length = 228

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 34  SVTKSYISSQTNGETGQLVHRFTVPAPVV---------IILIILCVMAGIIGTILLISYS 84
           S T  Y     N +   L H  T+   VV         + LIIL V+ G+IG ++LI   
Sbjct: 124 SDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILI-LL 182

Query: 85  IRRLI 89
           I++LI
Sbjct: 183 IKKLI 187


>gi|215272334 sodium channel, voltage-gated, type IV, beta isoform
          3 [Homo sapiens]
          Length = 118

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 34 SVTKSYISSQTNGETGQLVHRFTVPAPVV---------IILIILCVMAGIIGTILLISYS 84
          S T  Y     N +   L H  T+   VV         + LIIL V+ G+IG ++LI   
Sbjct: 14 SDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILI-LL 72

Query: 85 IRRLI 89
          I++LI
Sbjct: 73 IKKLI 77


>gi|189181742 atlastin GTPase 1 isoform b [Homo sapiens]
          Length = 553

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 33  SSVTKSYISSQTNGETGQLVHRFTVPAPVVIILIILCVMAGIIGTI 78
           S + + YI    + ++  + H    PA + +++ I  V+AG+ G I
Sbjct: 423 SEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFI 468


>gi|74024917 atlastin GTPase 1 isoform b [Homo sapiens]
          Length = 553

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 33  SSVTKSYISSQTNGETGQLVHRFTVPAPVVIILIILCVMAGIIGTI 78
           S + + YI    + ++  + H    PA + +++ I  V+AG+ G I
Sbjct: 423 SEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFI 468


>gi|19923445 atlastin GTPase 1 isoform a [Homo sapiens]
          Length = 558

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 33  SSVTKSYISSQTNGETGQLVHRFTVPAPVVIILIILCVMAGIIGTI 78
           S + + YI    + ++  + H    PA + +++ I  V+AG+ G I
Sbjct: 423 SEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFI 468


>gi|4506241 platelet-activating factor receptor [Homo sapiens]
          Length = 342

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 18/76 (23%), Positives = 36/76 (47%)

Query: 5   IIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAPVVII 64
           +I+V ++        L +T     ++ S +VT+ +   +       ++H F V +  ++ 
Sbjct: 140 VIWVAIVGAASYFLILDSTNTVPDSAGSGNVTRCFEHYEKGSVPVLIIHIFIVFSFFLVF 199

Query: 65  LIILCVMAGIIGTILL 80
           LIIL     II T+L+
Sbjct: 200 LIILFCNLVIIRTLLM 215


>gi|52317269 olfactory receptor, family 51, subfamily F, member 2
           [Homo sapiens]
          Length = 342

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 7   FVLLLSEIVSISALSTTEVAMHTSTS--SSVTKSYISSQTNGETGQLVHRFTVPAPVVII 64
           ++L++  ++SI++      A +T TS  S+V+  Y+   +      LVHR+   AP  + 
Sbjct: 232 YILIIRSVLSIASSEERRKAFNTCTSHISAVSIFYLPLISLS----LVHRYGHSAPPFVH 287

Query: 65  LIILCVMAGIIGTILLISYSIR 86
           +I+  V   I   +  I YS++
Sbjct: 288 IIMANVFLLIPPVLNPIIYSVK 309


>gi|4885311 lysophosphatidic acid receptor 4 [Homo sapiens]
          Length = 370

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 6   IFVLLLSEIVSISALSTTEVAMHTST-----SSSVTKSYISSQT 44
           +++L+LS  +S S  STT V   T+T     S  V K+Y+S  T
Sbjct: 162 VWILVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKIT 205


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 11   LSEIVSISALSTTEVAMHTSTSSSVTKS 38
            +++ VS+S LS  EV M+T T  S+T S
Sbjct: 3084 ITQTVSLSHLSQGEVRMNTPTLPSITYS 3111


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.136    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,434,263
Number of Sequences: 37866
Number of extensions: 72987
Number of successful extensions: 400
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 16
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.