Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TXNDC17 Sequence: fasta or formatted (123aa) NCBI GI: 14249348
Description:

thioredoxin-like 5

Referenced in:

Glutathione Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          7           1
 C cysteine            4.1          5           1
 D aspartate           4.1          5           1
 E glutamate          10.6         13           2
 F phenylalanine       5.7          7           1
 G glycine             7.3          9           2
 H histidine           2.4          3           1
 I isoleucine          2.4          3           1
 K lysine              8.1         10           1
 L leucine             6.5          8           2
 M methionine          1.6          2           1
 N asparagine          4.1          5           2
 P proline             4.9          6           1
 Q glutamine           4.1          5           1
 R arginine            3.3          4           1
 S serine              5.7          7           1
 T threonine           4.1          5           1
 V valine              9.8         12           2
 W tryptophan          1.6          2           1
 Y tyrosine            4.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thioredoxin-like 5 
BCMO1                 0.030   beta-carotene 15,15'-monooxygenase 
ARG1                  0.013   arginase 1 
TTN                   0.004   titin isoform N2-A 
TTN                   0.004   titin isoform novex-2 
TTN                   0.004   titin isoform novex-1 
TTN                   0.004   titin isoform N2-B 
GLIS3                 0.004   GLIS family zinc finger 3 isoform a 
GLIS3                 0.004   GLIS family zinc finger 3 isoform b 
CHPF2                 0.004   chondroitin polymerizing factor 2 
LCE2D                 0.004   late cornified envelope 2D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press