Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: OMP Sequence: fasta or formatted (163aa) NCBI GI: 5453828
Description:

olfactory marker protein

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5          9           1
 C cysteine            0.0          0           0
 D aspartate           7.4         12           1
 E glutamate           7.4         12           1
 F phenylalanine       4.3          7           1
 G glycine             4.9          8           1
 H histidine           0.0          0           0
 I isoleucine          2.5          4           1
 K lysine              5.5          9           1
 L leucine            12.9         21           2
 M methionine          3.1          5           1
 N asparagine          4.3          7           1
 P proline             4.9          8           1
 Q glutamine           9.2         15           3
 R arginine            8.0         13           1
 S serine              3.7          6           1
 T threonine           6.1         10           1
 V valine              6.7         11           2
 W tryptophan          2.5          4           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory marker protein 
ZNF853                0.020   zinc finger protein 853 
LOC642574             0.017   PREDICTED: IQ motif and ankyrin repeat domain-conta...
AGGF1                 0.017   angiogenic factor VG5Q 
BCMO1                 0.013   beta-carotene 15,15'-monooxygenase 
SMARCAD1              0.013   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.013   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.013   SWI/SNF-related, matrix-associated actin-dependent ...
LOC642574             0.010   PREDICTED: IQ motif and ankyrin repeat domain-conta...
KIAA1949              0.010   phostensin 
KIAA1949              0.010   phostensin 
FILIP1                0.010   filamin A interacting protein 1 
MKL1                  0.007   megakaryoblastic leukemia 1 protein 
WWC2                  0.007   WW and C2 domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press